Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 1.0e-167 593.6 356 100.0
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 2.0e-86 323.6 368 57.9
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 5.4e-84 315.5 367 54.5
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 2.3e-79 300.1 365 55.1
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 4.0e-79 299.3 365 58.6
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 4.0e-79 299.3 362 62.4
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 4.0e-79 299.3 345 55.4
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 1.5e-78 297.4 367 58.9
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 3.4e-78 296.2 363 58.4
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 1.3e-77 294.3 342 55.8
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 1.7e-77 293.9 359 52.4
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 2.8e-77 293.1 359 52.4
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 2.4e-76 290.0 362 56.1
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 3.5e-75 286.2 357 56.6
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 4.5e-75 285.8 359 55.2
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 1.7e-74 283.9 346 58.7
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 3.8e-74 282.7 357 57.7
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 6.6e-74 282.0 346 58.1
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 1.5e-73 280.8 366 50.5
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 1.5e-73 280.8 361 54.8
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 1.9e-73 280.4 365 57.3
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 4.3e-73 279.3 367 56.7
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 4.3e-73 279.3 353 61.5
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 5.6e-73 278.9 365 57.3
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 7.3e-73 278.5 357 55.5
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 9.5e-73 278.1 364 59.9
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 2.1e-72 276.9 362 61.6
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 8.0e-72 275.0 362 58.8
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 8.0e-72 275.0 365 57.5
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 1.8e-71 273.9 363 51.5
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 2.3e-71 273.5 362 51.9
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 3.0e-71 273.1 363 57.9
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 5.2e-71 272.3 357 58.3
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 6.8e-71 271.9 362 50.6
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 6.8e-71 271.9 365 53.4
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 8.9e-71 271.6 365 54.0
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 8.9e-71 271.6 362 50.0
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 1.2e-70 271.2 366 50.3
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 1.2e-70 271.2 358 55.6
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 1.5e-70 270.8 322 61.8
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 2.0e-70 270.4 363 52.9
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 2.6e-70 270.0 365 54.8
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 5.7e-70 268.9 351 57.0
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 5.7e-70 268.9 355 56.3
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 9.8e-70 268.1 363 50.7
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 9.8e-70 268.1 330 57.6
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.7e-69 267.3 355 56.1
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 1.7e-69 267.3 358 53.4
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 1.7e-69 267.3 352 56.8
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 1.7e-69 267.3 362 57.5
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 2.2e-69 266.9 358 57.0
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 2.2e-69 266.9 366 50.8
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 2.2e-69 266.9 361 55.7
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 4.9e-69 265.8 331 58.9
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 1.4e-68 264.2 364 49.7
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.4e-68 264.2 364 55.2
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 2.4e-68 263.5 355 48.5
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 7.0e-68 261.9 331 56.2
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 1.6e-67 260.8 383 47.8
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 2.0e-67 260.4 361 53.7
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 2.0e-67 260.4 361 53.7
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 2.0e-67 260.4 361 50.7
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 4.6e-67 259.2 368 53.3
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 4.6e-67 259.2 360 51.1
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 7.8e-67 258.5 359 48.2
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 7.8e-67 258.5 359 48.2
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 1.0e-66 258.1 360 54.7
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 1.7e-66 257.3 353 50.7
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 2.3e-66 256.9 360 47.8
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 3.0e-66 256.5 365 55.1
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 6.6e-66 255.4 356 52.5
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 6.6e-66 255.4 362 58.6
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 6.6e-66 255.4 361 56.2
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 8.6e-66 255.0 359 57.1
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 8.6e-66 255.0 362 48.6
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 1.5e-65 254.2 358 52.2
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 7.3e-65 251.9 359 50.1
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 7.3e-65 251.9 359 58.8
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 1.2e-64 251.1 335 53.1
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 1.2e-64 251.1 334 53.3
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 1.2e-64 251.1 367 53.7
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 1.6e-64 250.8 365 53.7
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.6e-64 250.8 355 54.4
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 2.1e-64 250.4 363 54.0
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 2.8e-64 250.0 334 53.6
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 6.2e-64 248.8 364 52.5
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 6.2e-64 248.8 364 53.0
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 8.0e-64 248.4 371 52.8
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 1.0e-63 248.1 361 49.6
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 6.8e-63 245.4 362 50.0
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 3.4e-62 243.0 364 52.5
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 4.4e-62 242.7 355 54.1
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 7.5e-62 241.9 357 53.5
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 2.9e-61 240.0 358 57.8
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 2.9e-61 240.0 396 48.0
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 4.9e-61 239.2 335 58.2
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 2.7e-59 233.4 369 49.6
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 6.0e-59 232.3 358 51.4
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 1.5e-57 227.6 356 48.9
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 1.9e-57 227.3 369 45.8
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 4.3e-57 226.1 347 50.7
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 5.6e-57 225.7 369 49.1
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 7.3e-57 225.3 357 49.0
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 6.2e-56 222.2 358 49.4
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 5.2e-55 219.2 354 44.9
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 8.9e-55 218.4 314 48.4
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 1.6e-51 207.6 262 56.5
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 2.3e-50 203.8 396 41.7
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 1.5e-49 201.1 363 45.5
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 8.6e-42 175.3 212 60.4
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 3.2e-36 156.8 394 39.3
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 4.6e-35 152.9 149 60.4
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 4.3e-33 146.4 284 49.3
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 5.8e-30 136.0 191 49.7
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 4.9e-29 132.9 116 68.1
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 2.1e-27 127.5 229 47.2
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 1.5e-25 121.3 123 60.2
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 2.4e-20 104.0 109 63.3
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 3.7e-16 90.1 222 39.2
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 3.4e-14 83.6 102 54.9


User provided reference genes

Program Settings