Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1689.1 892 100.0
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1265.4 840 80.8
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1244.6 839 77.9
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1241.9 842 79.5
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1236.5 840 79.3
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1233.8 840 78.0
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1232.6 839 77.1
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1229.5 839 77.2
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1229.2 839 77.0
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1226.1 840 78.2
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1224.2 863 76.4
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1224.2 841 76.5
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1222.2 838 75.5
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1219.5 840 77.9
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1216.1 838 75.9
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1215.3 839 77.5
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1214.5 836 77.2
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1214.5 838 76.0
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1214.1 845 75.5
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1213.4 845 76.6
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1212.6 845 76.2
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1212.6 838 75.9
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1211.8 817 77.2
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1211.8 839 76.9
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1206.0 840 75.7
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1205.7 841 76.5
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1204.9 852 75.4
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1204.9 844 75.4
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1204.5 846 73.4
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1204.1 838 76.0
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1203.7 838 74.6
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1201.8 899 72.7
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1201.8 841 75.9
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1201.4 848 75.5
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1200.7 838 74.6
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1199.9 845 76.1
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1199.1 857 75.1
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1195.6 844 75.9
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1194.9 839 75.9
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1194.5 845 75.6
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1193.3 851 74.5
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1192.9 848 74.1
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1192.9 840 74.5
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1192.6 850 76.7
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1192.6 850 74.9
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1192.2 845 75.5
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1189.1 846 76.7
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1186.0 841 75.6
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1186.0 811 75.3
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1184.1 780 79.2
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1183.7 841 75.5
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1183.7 838 73.6
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1181.4 869 73.3
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1181.0 895 72.5
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1181.0 837 75.1
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1180.6 841 74.9
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1180.2 835 75.7
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1179.5 848 74.2
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1178.7 833 73.2
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1177.5 842 74.2
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1176.8 813 77.1
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1175.2 840 73.6
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1172.1 840 72.1
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1171.8 819 75.3
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1171.4 837 73.6
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1168.3 846 71.9
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1167.1 847 75.2
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1166.0 838 75.3
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1164.4 781 78.4
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1164.1 840 74.2
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1158.7 857 72.3
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1156.7 805 75.4
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1146.7 830 72.5
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1145.2 871 70.7
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1141.7 847 73.4
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1136.3 847 69.9
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1134.0 846 72.5
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1131.7 812 74.6
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1126.7 838 70.2
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1122.8 844 71.1
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1121.3 817 72.9
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1116.7 820 72.6
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1116.3 838 70.6
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1115.5 843 70.1
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1114.4 841 69.8
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1111.7 827 72.1
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1111.7 827 72.1
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1110.9 848 69.2
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1110.9 847 70.0
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1110.9 847 70.0
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1109.4 842 70.9
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1109.4 842 70.9
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1109.0 838 71.5
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1108.2 790 75.1
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1107.4 842 70.8
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1092.8 846 71.0
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1090.5 1022 61.6
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1084.3 945 63.7
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1082.0 836 67.3
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1075.8 839 67.7
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1075.5 839 69.7
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 2.1e-307 1058.9 829 68.9
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 3.0e-301 1038.5 842 70.1
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 3.3e-300 1035.0 844 67.8
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 1.7e-296 1022.7 760 73.3
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 3.8e-296 1021.5 796 68.1
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 2.4e-290 1002.3 894 62.1
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 8.5e-264 914.1 830 57.6
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 1.2e-212 744.2 678 60.8
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 5.8e-188 662.1 376 84.6
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 3.8e-187 659.4 517 70.6
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 5.3e-181 639.0 539 62.0
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 8.5e-171 605.1 460 74.8
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 2.3e-160 570.5 310 87.7
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 1.1e-149 535.0 380 70.5
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 4.1e-149 533.1 905 39.6
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 7.7e-148 528.9 294 87.8
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 2.5e-138 497.3 377 69.8
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 3.1e-120 437.2 309 72.2
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.0e-120 436.8 245 82.9
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 3.3e-114 417.2 838 34.8
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 5.4e-101 373.2 211 83.4
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 7.1e-93 346.3 313 61.7
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 9.9e-87 325.9 894 29.9
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 6.0e-84 316.6 181 84.5
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 1.3e-83 315.5 181 82.9
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 1.3e-83 315.5 181 82.9
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 4.8e-81 307.0 174 85.1
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 9.6e-74 282.7 536 37.7
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 2.4e-72 278.1 537 37.4
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.5e-71 275.4 215 67.9
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 7.6e-71 273.1 215 67.4
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 1.9e-69 268.5 336 53.9
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 1.5e-66 258.8 224 60.3
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 6.9e-64 250.0 329 46.2
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 9.7e-58 229.6 131 87.8
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 9.7e-58 229.6 144 82.6
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 3.1e-56 224.6 168 70.2
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 3.2e-53 214.5 158 71.5
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 3.1e-48 198.0 138 73.2
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 4.5e-47 194.1 314 40.1
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 4.4e-42 177.6 96 90.6
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 7.0e-40 170.2 88 85.2
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 4.7e-36 157.5 99 78.8
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 6.7e-35 153.7 120 63.3
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 3.1e-32 144.8 83 84.3
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 1.0e-30 139.8 77 85.7
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 9.8e-26 123.2 87 64.4
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 1.4e-24 119.4 122 54.9
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 9.1e-24 116.7 182 45.6
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 5.5e-21 107.5 85 60.0
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 5.5e-21 107.5 65 83.1
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.2e-20 106.3 73 74.0
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 4.0e-19 101.3 105 54.3
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 1.7e-17 95.9 68 66.2
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 4.9e-17 94.4 77 61.0
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 1.1e-16 93.2 57 71.9
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 1.8e-16 92.4 56 71.4
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 4.0e-11 74.7 56 66.1
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 3.4e-10 71.6 113 45.1
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 7.5e-10 70.5 119 42.0
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.7e-09 69.3 31 83.9
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 9.2e-08 63.5 38 81.6
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 1.2e-07 63.2 59 59.3
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 1.2e-07 63.2 45 66.7
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 5.0e-06 57.8 150 34.0
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 5.0e-06 57.8 31 64.5


User provided reference genes

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