Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015878 Vanilla planifolia HOM05D003161 ORTHO05D019240 2.0e-83 312.4 161 100.0
HPP92_027317 Vanilla planifolia HOM05D003161 ORTHO05D005173 8.1e-72 273.9 183 80.3
PSO339G0479 Papaver somniferum HOM05D003161 ORTHO05D005173 6.7e-34 147.9 182 44.0
FAN02G0008 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.5e-33 146.7 154 48.1
PSO384G1659 Papaver somniferum HOM05D003161 ORTHO05D005173 1.9e-33 146.4 179 44.7
Aqoxy2G02393 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 3.7e-32 142.1 182 45.1
DCAR_016871 Daucus carota HOM05D003161 ORTHO05D005173 2.4e-31 139.4 176 43.8
Nitab4.5_0000571g0110 Nicotiana tabacum HOM05D003161 ORTHO05D005173 3.1e-31 139.0 161 46.0
Peaxi162Scf00045g00223 Petunia axillaris HOM05D003161 ORTHO05D005173 6.9e-31 137.9 174 42.5
Manes.09G040300 Manihot esculenta HOM05D003161 ORTHO05D005173 1.5e-30 136.7 190 40.0
FAN05G0820 Fragaria x ananassa HOM05D003161 ORTHO05D005173 2.0e-30 136.3 175 42.9
FAN05G2723 Fragaria x ananassa HOM05D003161 ORTHO05D005173 2.0e-30 136.3 175 42.9
FAN14G4107 Fragaria x ananassa HOM05D003161 ORTHO05D005173 2.0e-30 136.3 175 42.9
arahy.Tifrunner.gnm1.ann1.S31791 Arachis hypogaea HOM05D003161 ORTHO05D005173 2.6e-30 136.0 158 46.8
FAN09G2861 Fragaria x ananassa HOM05D003161 ORTHO05D005173 3.4e-30 135.6 175 42.3
CAN.G479.45 Capsicum annuum HOM05D003161 ORTHO05D005173 4.5e-30 135.2 181 40.9
RcHm_v2.0_Chr3g0478661 Rosa chinensis HOM05D003161 ORTHO05D005173 4.5e-30 135.2 182 41.8
TWI53G1521 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 5.9e-30 134.8 182 41.8
Gorai.006G145100 Gossypium raimondii HOM05D003161 ORTHO05D005173 7.6e-30 134.4 187 40.6
Lj2C361G9 Lonicera japonica HOM05D003161 ORTHO05D005173 7.6e-30 134.4 186 39.8
Aa31sc238G10 Aethionema arabicum HOM05D003161 ORTHO05D005173 1.0e-29 134.0 184 42.4
Duzib128G1871 Durio zibethinus HOM05D003161 ORTHO05D005173 1.0e-29 134.0 186 41.4
Gohir.A09G130300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 1.0e-29 134.0 187 41.7
Atru.chr8.1220 Acer truncatum HOM05D003161 ORTHO05D005173 1.3e-29 133.7 186 38.7
FvH4_6g21470 Fragaria vesca HOM05D003161 ORTHO05D005173 1.7e-29 133.3 182 40.7
Actinidia38605 Actinidia chinensis HOM05D003161 ORTHO05D005173 2.9e-29 132.5 181 40.9
Thhalv10019877m.g Eutrema salsugineum HOM05D003161 ORTHO05D005173 3.8e-29 132.1 184 41.3
Thecc.05G180200 Theobroma cacao HOM05D003161 ORTHO05D005173 3.8e-29 132.1 186 40.9
Gohir.D09G126300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 5.0e-29 131.7 187 40.1
Zm00001eb302830 Zea mays HOM05D003161 ORTHO05D005173 5.0e-29 131.7 182 39.0
Nitab4.5_0001364g0070 Nicotiana tabacum HOM05D003161 ORTHO05D005173 6.5e-29 131.3 174 42.0
Dinv25021 Davidia involucrata HOM05D003161 ORTHO05D005173 1.1e-28 130.6 186 40.9
QL07p025530 Quercus lobata HOM05D003161 ORTHO05D005173 1.4e-28 130.2 184 40.2
Solyc03g051900.4 Solanum lycopersicum HOM05D003161 ORTHO05D005173 1.4e-28 130.2 181 39.8
Sopen03g011350 Solanum pennellii HOM05D003161 ORTHO05D005173 1.4e-28 130.2 181 39.8
BolC1t05277H Brassica oleracea HOM05D003161 ORTHO05D005173 1.9e-28 129.8 184 41.8
COL.COLO4_29434 Corchorus olitorius HOM05D003161 ORTHO05D005173 2.5e-28 129.4 180 40.6
CANSAT64G2741 Cannabis sativa HOM05D003161 ORTHO05D005173 4.2e-28 128.6 182 41.2
CSS0043330 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 5.5e-28 128.3 182 39.0
CSS0010787 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 7.2e-28 127.9 182 39.0
Cfa020115 Carpinus fangiana HOM05D003161 ORTHO05D005173 7.2e-28 127.9 181 40.9
BraA01t04149Z Brassica rapa HOM05D003161 ORTHO05D005173 9.3e-28 127.5 184 41.3
Haze_20072 Corylus avellana HOM05D003161 ORTHO05D005173 1.2e-27 127.1 184 40.2
Rhsim04G0093500 Rhododendron simsii HOM05D003161 ORTHO05D005173 1.2e-27 127.1 182 36.8
PGR004G2129 Punica granatum HOM05D003161 ORTHO05D005173 1.6e-27 126.7 183 42.6
BcaB04g21101 Brassica carinata HOM05D003161 ORTHO05D005173 2.1e-27 126.3 184 42.9
BcaC05g29306 Brassica carinata HOM05D003161 ORTHO05D005173 2.1e-27 126.3 184 40.8
C05p55950 Brassica napus HOM05D003161 ORTHO05D005173 2.1e-27 126.3 184 40.8
BolC5t34262H Brassica oleracea HOM05D003161 ORTHO05D005173 2.1e-27 126.3 184 40.8
Sabra16G0064500 Salix brachista HOM05D003161 ORTHO05D005173 2.1e-27 126.3 189 39.7
Potri.016G062600 Populus trichocarpa HOM05D003161 ORTHO05D005173 2.7e-27 125.9 186 38.7
Sp3g10190 Schrenkiella parvula HOM05D003161 ORTHO05D005173 2.7e-27 125.9 184 40.2
ECA238G1915 Erigeron canadensis HOM05D003161 ORTHO05D005173 3.6e-27 125.6 181 38.7
Aa31LG3G5540 Aethionema arabicum HOM05D003161 ORTHO05D005173 4.6e-27 125.2 184 40.2
A05p37390 Brassica napus HOM05D003161 ORTHO05D005173 4.6e-27 125.2 184 40.2
Hund19218 Selenicereus undatus HOM05D003161 ORTHO05D005173 4.6e-27 125.2 179 39.7
CARHR086520 Cardamine hirsuta HOM05D003161 ORTHO05D005173 1.0e-26 124.0 184 39.7
Ciclev10013867m.g Citrus clementina HOM05D003161 ORTHO05D005173 1.0e-26 124.0 166 42.2
SalBow1G2678 Salvia bowleyana HOM05D003161 ORTHO05D005173 1.0e-26 124.0 176 40.9
Cpa.g.sc85.20 Carica papaya HOM05D003161 ORTHO05D005173 1.3e-26 123.6 177 41.8
AUR62041563 Chenopodium quinoa HOM05D003161 ORTHO05D005173 1.3e-26 123.6 185 42.7
Prupe.7G085700 Prunus persica HOM05D003161 ORTHO05D005173 1.3e-26 123.6 181 40.9
ATR0737G016 Amborella trichopoda HOM05D003161 ORTHO05D005173 1.8e-26 123.2 182 41.2
Ca_25942_v3 Cicer arietinum L. HOM05D003161 ORTHO05D005173 1.8e-26 123.2 182 39.0
MD12G1051100 Malus domestica HOM05D003161 ORTHO05D005173 1.8e-26 123.2 186 41.4
Ah.15g091410 Amaranthus hybridus HOM05D003161 ORTHO05D005173 2.3e-26 122.9 185 40.0
AL3G23570 Arabidopsis lyrata HOM05D003161 ORTHO05D005173 2.3e-26 122.9 179 40.2
MSTRG.26730 Avicennia marina HOM05D003161 ORTHO05D005173 2.3e-26 122.9 186 39.8
Carub.0003s1130 Capsella rubella HOM05D003161 ORTHO05D005173 3.0e-26 122.5 184 39.7
ClCG04G001230 Citrullus lanatus HOM05D003161 ORTHO05D005173 3.0e-26 122.5 184 40.8
BcaC09g48184 Brassica carinata HOM05D003161 ORTHO05D005173 3.9e-26 122.1 193 39.9
AUR62026957 Chenopodium quinoa HOM05D003161 ORTHO05D005173 3.9e-26 122.1 187 41.7
AT3G11964 Arabidopsis thaliana HOM05D003161 ORTHO05D005173 5.1e-26 121.7 179 40.8
TAR633G1132 Trochodendron aralioides HOM05D003161 ORTHO05D005173 5.1e-26 121.7 181 40.9
CsaV3_4G031200 Cucumis sativus L. HOM05D003161 ORTHO05D005173 6.7e-26 121.3 189 40.2
Eucgr.A02507 Eucalyptus grandis HOM05D003161 ORTHO05D005173 6.7e-26 121.3 182 39.0
Lj5g0006535 Lotus japonicus HOM05D003161 ORTHO05D005173 1.5e-25 120.2 178 39.3
BraA05t22538Z Brassica rapa HOM05D003161 ORTHO05D005173 2.5e-25 119.4 184 39.1
Hund19220 Selenicereus undatus HOM05D003161 ORTHO05D005173 2.5e-25 119.4 184 38.0
Migut.K00013 Erythranthe guttata HOM05D003161 ORTHO05D005173 3.3e-25 119.0 181 37.0
Lalb_Chr21g0316111 Lupinus albus HOM05D003161 ORTHO05D005173 3.3e-25 119.0 182 38.5
MELO3C008994.2 Cucumis melo HOM05D003161 ORTHO05D005173 4.3e-25 118.6 190 38.4
SGA_v2.0_scaffold274G46506 Striga asiatica HOM05D003161 ORTHO05D005173 4.3e-25 118.6 181 39.8
CiPaw.08G134900 Carya illinoinensis HOM05D003161 ORTHO05D005173 7.4e-25 117.9 184 40.2
Medtr1g054710 Medicago truncatula HOM05D003161 ORTHO05D005173 7.4e-25 117.9 184 37.5
Oeu046733.1 Olea europaea HOM05D003161 ORTHO05D005173 7.4e-25 117.9 172 39.0
Sc19g0006250 Simmondsia chinensis HOM05D003161 ORTHO05D005173 1.3e-24 117.1 185 38.4
arahy.Tifrunner.gnm1.ann1.PL5CUR Arachis hypogaea HOM05D003161 ORTHO05D005173 2.8e-24 115.9 202 37.1
THA.LOC104826779 Tarenaya hassleriana HOM05D003161 ORTHO05D005173 2.8e-24 115.9 193 36.8
vmacro09128 Vaccinium macrocarpon HOM05D003161 ORTHO05D005173 3.7e-24 115.5 204 34.3
Sed0016761 Sechium edule HOM05D003161 ORTHO05D005173 4.8e-24 115.2 190 40.0
Glyma.09G104000 Glycine max HOM05D003161 ORTHO05D005173 8.2e-24 114.4 185 34.6
Glyma.02G168900 Glycine max HOM05D003161 ORTHO05D005173 1.1e-23 114.0 185 35.1
HanXRQChr14g0457761 Helianthus annuus HOM05D003161 ORTHO05D005173 1.4e-23 113.6 179 40.2
Psat6g109960 Pisum sativum HOM05D003161 ORTHO05D005173 1.8e-23 113.2 182 37.9
Phvul.007G270000 Phaseolus vulgaris HOM05D003161 ORTHO05D005173 2.4e-23 112.8 185 39.5
CDE02G2929 Ceratophyllum demersum HOM05D003161 ORTHO05D005173 3.1e-23 112.5 180 38.9
CAN.G317.9 Capsicum annuum HOM05D003161 ORTHO05D005173 1.0e-21 107.5 128 44.5
VMungo0720G1738 Vigna mungo HOM05D003161 ORTHO05D005173 2.9e-21 105.9 187 38.0
CiPaw.08G134600 Carya illinoinensis HOM05D003161 ORTHO05D005173 8.5e-21 104.4 164 37.8
GSVIVG01033430001 Vitis vinifera HOM05D003161 ORTHO05D005173 3.2e-20 102.4 156 39.7
EL10Ac7g16694 Beta vulgaris HOM05D003161 ORTHO05D005173 1.6e-19 100.1 182 37.9
Lsat_1_v5_gn_2_58000 Lactuca sativa HOM05D003161 ORTHO05D005173 7.9e-19 97.8 166 35.5
Cc06_g23250 Coffea canephora HOM05D003161 ORTHO05D005173 3.0e-18 95.9 166 38.0
MD14G1050200 Malus domestica HOM05D003161 ORTHO05D005173 4.4e-17 92.0 181 34.3
Mapoly0019s0051 Marchantia polymorpha HOM05D003161 ORTHO05D005173 2.2e-16 89.7 170 33.5
Gorai.007G198500 Gossypium raimondii HOM05D003161 ORTHO05D019240 2.8e-16 89.4 79 54.4
TPR.G14502 Trifolium pratense HOM05D003161 ORTHO05D005173 2.8e-16 89.4 105 45.7
unitig_744.g24086 Utricularia gibba HOM05D003161 ORTHO05D005173 2.8e-16 89.4 165 35.8
Gohir.D08G094800 Gossypium hirsutum HOM05D003161 ORTHO05D019240 6.3e-16 88.2 114 41.2
Gohir.D06G091175 Gossypium hirsutum HOM05D003161 ORTHO05D019240 2.2e-13 79.7 92 47.8
Gorai.011G237200 Gossypium raimondii HOM05D003161 ORTHO05D019240 1.1e-12 77.4 89 47.2
SEGI_01045 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 7.2e-12 74.7 155 33.5
CAN.G2759.1 Capsicum annuum HOM05D003161 ORTHO05D005173 3.6e-11 72.4 174 30.5
Pp3c4_30330 Physcomitrium patens HOM05D003161 ORTHO05D005173 2.3e-10 69.7 187 28.9
SHI30029 Sapria himalayana HOM05D003161 ORTHO05D005173 5.2e-10 68.6 184 30.4
Gohir.D12G128000 Gossypium hirsutum HOM05D003161 ORTHO05D036035 1.4e-07 60.5 67 47.8
SMO137G0021 Selaginella moellendorffii HOM05D003161 ORTHO05D005173 9.1e-07 57.8 155 28.4
Gohir.D01G126601 Gossypium hirsutum HOM05D003161 ORTHO05D036035 2.6e-06 56.2 67 44.8
Gorai.012G168200 Gossypium raimondii HOM05D003161 ORTHO05D036035 2.6e-06 56.2 67 44.8


User provided reference genes

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