Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015877 Vanilla planifolia HOM05D003161 ORTHO05D005173 3.1e-136 488.4 237 100.0
TAR633G1132 Trochodendron aralioides HOM05D003161 ORTHO05D005173 1.4e-51 207.2 259 45.2
Cfa020115 Carpinus fangiana HOM05D003161 ORTHO05D005173 1.8e-51 206.8 257 45.9
Dinv25021 Davidia involucrata HOM05D003161 ORTHO05D005173 1.8e-51 206.8 262 45.0
Thecc.05G180200 Theobroma cacao HOM05D003161 ORTHO05D005173 1.8e-51 206.8 259 45.2
Haze_20072 Corylus avellana HOM05D003161 ORTHO05D005173 8.9e-51 204.5 257 45.1
PGR004G2129 Punica granatum HOM05D003161 ORTHO05D005173 5.7e-50 201.8 273 43.2
CSS0010787 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 2.2e-49 199.9 279 41.2
Sc19g0006250 Simmondsia chinensis HOM05D003161 ORTHO05D005173 2.2e-49 199.9 248 45.2
CANSAT64G2741 Cannabis sativa HOM05D003161 ORTHO05D005173 2.8e-49 199.5 263 43.3
TWI53G1521 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 3.7e-49 199.1 259 43.6
MD12G1051100 Malus domestica HOM05D003161 ORTHO05D005173 1.8e-48 196.8 259 45.2
Gorai.006G145100 Gossypium raimondii HOM05D003161 ORTHO05D005173 3.2e-48 196.1 259 43.6
GSVIVG01033430001 Vitis vinifera HOM05D003161 ORTHO05D005173 3.2e-48 196.1 236 47.0
Gohir.A09G130300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 5.4e-48 195.3 259 44.0
Duzib128G1871 Durio zibethinus HOM05D003161 ORTHO05D005173 7.0e-48 194.9 259 43.2
Gohir.D09G126300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 7.0e-48 194.9 259 43.2
Atru.chr8.1220 Acer truncatum HOM05D003161 ORTHO05D005173 9.2e-48 194.5 259 44.0
FAN14G4107 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.2e-47 194.1 259 44.0
Lj2C361G9 Lonicera japonica HOM05D003161 ORTHO05D005173 2.7e-47 193.0 256 43.8
Prupe.7G085700 Prunus persica HOM05D003161 ORTHO05D005173 2.7e-47 193.0 259 42.5
FvH4_6g21470 Fragaria vesca HOM05D003161 ORTHO05D005173 3.5e-47 192.6 259 44.0
Aqoxy2G02393 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 4.5e-47 192.2 259 42.1
PSO384G1659 Papaver somniferum HOM05D003161 ORTHO05D005173 5.9e-47 191.8 258 43.0
FAN05G2723 Fragaria x ananassa HOM05D003161 ORTHO05D005173 7.8e-47 191.4 259 44.0
Lj5g0006535 Lotus japonicus HOM05D003161 ORTHO05D005173 7.8e-47 191.4 262 42.7
Eucgr.A02507 Eucalyptus grandis HOM05D003161 ORTHO05D005173 1.3e-46 190.7 258 42.6
QL07p025530 Quercus lobata HOM05D003161 ORTHO05D005173 1.3e-46 190.7 259 43.2
RcHm_v2.0_Chr3g0478661 Rosa chinensis HOM05D003161 ORTHO05D005173 1.3e-46 190.7 259 42.5
FAN02G0008 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.7e-46 190.3 259 43.6
FAN09G2861 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.7e-46 190.3 259 44.0
PSO339G0479 Papaver somniferum HOM05D003161 ORTHO05D005173 2.3e-46 189.9 258 43.0
Ciclev10013867m.g Citrus clementina HOM05D003161 ORTHO05D005173 3.9e-46 189.1 262 43.1
Glyma.02G168900 Glycine max HOM05D003161 ORTHO05D005173 8.6e-46 188.0 264 42.0
Oeu046733.1 Olea europaea HOM05D003161 ORTHO05D005173 8.6e-46 188.0 241 42.7
Potri.016G062600 Populus trichocarpa HOM05D003161 ORTHO05D005173 8.6e-46 188.0 259 44.0
CiPaw.08G134900 Carya illinoinensis HOM05D003161 ORTHO05D005173 1.1e-45 187.6 259 42.9
FAN05G0820 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.5e-45 187.2 259 43.2
Ah.15g091410 Amaranthus hybridus HOM05D003161 ORTHO05D005173 1.9e-45 186.8 256 40.6
ECA238G1915 Erigeron canadensis HOM05D003161 ORTHO05D005173 4.3e-45 185.7 238 45.4
Glyma.09G104000 Glycine max HOM05D003161 ORTHO05D005173 1.6e-44 183.7 253 41.9
Lsat_1_v5_gn_2_58000 Lactuca sativa HOM05D003161 ORTHO05D005173 1.6e-44 183.7 250 42.8
Rhsim04G0093500 Rhododendron simsii HOM05D003161 ORTHO05D005173 2.1e-44 183.3 266 41.7
HanXRQChr14g0457761 Helianthus annuus HOM05D003161 ORTHO05D005173 2.8e-44 183.0 241 44.8
CDE02G2929 Ceratophyllum demersum HOM05D003161 ORTHO05D005173 3.6e-44 182.6 250 44.0
DCAR_016871 Daucus carota HOM05D003161 ORTHO05D005173 3.6e-44 182.6 256 41.4
Actinidia38605 Actinidia chinensis HOM05D003161 ORTHO05D005173 6.1e-44 181.8 260 41.9
Phvul.007G270000 Phaseolus vulgaris HOM05D003161 ORTHO05D005173 6.1e-44 181.8 268 42.5
Sopen03g011350 Solanum pennellii HOM05D003161 ORTHO05D005173 6.1e-44 181.8 258 41.5
Solyc03g051900.4 Solanum lycopersicum HOM05D003161 ORTHO05D005173 8.0e-44 181.4 258 41.1
vmacro09128 Vaccinium macrocarpon HOM05D003161 ORTHO05D005173 1.0e-43 181.0 260 42.7
VMungo0720G1738 Vigna mungo HOM05D003161 ORTHO05D005173 1.4e-43 180.6 258 40.7
Lalb_Chr21g0316111 Lupinus albus HOM05D003161 ORTHO05D005173 1.8e-43 180.3 268 40.7
C05p55950 Brassica napus HOM05D003161 ORTHO05D005173 2.3e-43 179.9 262 40.5
BolC5t34262H Brassica oleracea HOM05D003161 ORTHO05D005173 2.3e-43 179.9 262 40.5
Sed0016761 Sechium edule HOM05D003161 ORTHO05D005173 2.3e-43 179.9 261 41.0
Hund19220 Selenicereus undatus HOM05D003161 ORTHO05D005173 2.3e-43 179.9 250 39.2
ATR0737G016 Amborella trichopoda HOM05D003161 ORTHO05D005173 3.1e-43 179.5 268 40.3
Hund19218 Selenicereus undatus HOM05D003161 ORTHO05D005173 3.1e-43 179.5 251 39.0
PGSC0003DMG400008644 Solanum tuberosum HOM05D003161 ORTHO05D005173 3.1e-43 179.5 258 41.1
MSTRG.26730 Avicennia marina HOM05D003161 ORTHO05D005173 4.0e-43 179.1 254 39.4
TPR.G14502 Trifolium pratense HOM05D003161 ORTHO05D005173 8.9e-43 177.9 253 41.1
Migut.K00013 Erythranthe guttata HOM05D003161 ORTHO05D005173 1.2e-42 177.6 264 39.4
Nitab4.5_0001364g0070 Nicotiana tabacum HOM05D003161 ORTHO05D005173 1.2e-42 177.6 247 42.1
THA.LOC104826779 Tarenaya hassleriana HOM05D003161 ORTHO05D005173 2.0e-42 176.8 262 39.3
Manes.09G040300 Manihot esculenta HOM05D003161 ORTHO05D005173 2.6e-42 176.4 259 41.3
Peaxi162Scf00045g00223 Petunia axillaris HOM05D003161 ORTHO05D005173 2.6e-42 176.4 270 40.4
Ca_25942_v3 Cicer arietinum L. HOM05D003161 ORTHO05D005173 3.4e-42 176.0 236 43.2
BcaC09g48184 Brassica carinata HOM05D003161 ORTHO05D005173 4.4e-42 175.6 260 41.5
BraA01t04149Z Brassica rapa HOM05D003161 ORTHO05D005173 5.8e-42 175.3 271 39.9
Nitab4.5_0000571g0110 Nicotiana tabacum HOM05D003161 ORTHO05D005173 5.8e-42 175.3 258 39.9
A05p37390 Brassica napus HOM05D003161 ORTHO05D005173 9.8e-42 174.5 269 39.4
Psat6g109960 Pisum sativum HOM05D003161 ORTHO05D005173 9.8e-42 174.5 261 40.2
BolC1t05277H Brassica oleracea HOM05D003161 ORTHO05D005173 1.7e-41 173.7 260 41.2
Medtr1g054710 Medicago truncatula HOM05D003161 ORTHO05D005173 2.9e-41 172.9 247 40.9
CsaV3_4G031200 Cucumis sativus L. HOM05D003161 ORTHO05D005173 3.7e-41 172.6 260 38.1
SGA_v2.0_scaffold274G46506 Striga asiatica HOM05D003161 ORTHO05D005173 3.7e-41 172.6 257 40.5
Zm00001eb302830 Zea mays HOM05D003161 ORTHO05D005173 3.7e-41 172.6 257 39.7
AUR62041563 Chenopodium quinoa HOM05D003161 ORTHO05D005173 4.9e-41 172.2 256 38.3
BraA05t22538Z Brassica rapa HOM05D003161 ORTHO05D005173 8.3e-41 171.4 269 39.0
CAN.G317.9 Capsicum annuum HOM05D003161 ORTHO05D005173 8.3e-41 171.4 260 39.2
COL.COLO4_29434 Corchorus olitorius HOM05D003161 ORTHO05D005173 8.3e-41 171.4 213 45.1
CSS0043330 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 1.4e-40 170.6 280 37.5
AUR62026957 Chenopodium quinoa HOM05D003161 ORTHO05D005173 1.4e-40 170.6 256 37.9
CARHR086520 Cardamine hirsuta HOM05D003161 ORTHO05D005173 1.9e-40 170.2 259 40.2
Cc06_g23250 Coffea canephora HOM05D003161 ORTHO05D005173 4.1e-40 169.1 248 41.1
Os07g0203300 Oryza sativa ssp. japonica HOM05D003161 ORTHO05D005173 4.1e-40 169.1 258 38.8
Carub.0003s1130 Capsella rubella HOM05D003161 ORTHO05D005173 9.2e-40 167.9 259 38.6
MELO3C008994.2 Cucumis melo HOM05D003161 ORTHO05D005173 9.2e-40 167.9 260 37.3
HPP92_027318 Vanilla planifolia HOM05D003161 ORTHO05D005173 9.2e-40 167.9 140 70.7
arahy.Tifrunner.gnm1.ann1.PL5CUR Arachis hypogaea HOM05D003161 ORTHO05D005173 1.2e-39 167.5 258 37.2
arahy.Tifrunner.gnm1.ann1.S31791 Arachis hypogaea HOM05D003161 ORTHO05D005173 4.6e-39 165.6 258 36.8
Cpa.g.sc85.20 Carica papaya HOM05D003161 ORTHO05D005173 1.3e-38 164.1 261 40.6
BcaC05g29306 Brassica carinata HOM05D003161 ORTHO05D005173 2.3e-38 163.3 250 38.8
EL10Ac7g16694 Beta vulgaris HOM05D003161 ORTHO05D005173 3.9e-38 162.5 269 34.9
Hund18982 Selenicereus undatus HOM05D003161 ORTHO05D005173 8.6e-38 161.4 185 43.2
Sabra16G0064600 Salix brachista HOM05D003161 ORTHO05D005173 8.0e-36 154.8 325 35.4
Aa31sc238G10 Aethionema arabicum HOM05D003161 ORTHO05D005173 4.4e-34 149.1 262 37.0
ClCG04G001230 Citrullus lanatus HOM05D003161 ORTHO05D005173 7.5e-34 148.3 302 33.4
Sp3g10190 Schrenkiella parvula HOM05D003161 ORTHO05D005173 1.7e-33 147.1 262 35.9
AT3G11964 Arabidopsis thaliana HOM05D003161 ORTHO05D005173 3.2e-32 142.9 263 34.6
AL3G23570 Arabidopsis lyrata HOM05D003161 ORTHO05D005173 9.2e-32 141.4 263 35.0
SEGI_01045 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 1.2e-31 141.0 249 36.1
MD14G1049800 Malus domestica HOM05D003161 ORTHO05D005173 2.1e-31 140.2 177 45.2
Thhalv10019877m.g Eutrema salsugineum HOM05D003161 ORTHO05D005173 3.5e-31 139.4 262 35.5
BcaB04g21101 Brassica carinata HOM05D003161 ORTHO05D005173 7.8e-31 138.3 262 35.1
CAN.G479.45 Capsicum annuum HOM05D003161 ORTHO05D005173 3.6e-28 129.4 159 44.0
Aa31LG3G5540 Aethionema arabicum HOM05D003161 ORTHO05D005173 3.1e-27 126.3 225 37.3
Ah.15g091660 Amaranthus hybridus HOM05D003161 ORTHO05D005173 3.1e-27 126.3 157 43.9
Mapoly0019s0051 Marchantia polymorpha HOM05D003161 ORTHO05D005173 4.0e-27 125.9 275 30.5
Lsat_1_v5_gn_5_134021 Lactuca sativa HOM05D003161 ORTHO05D005173 2.0e-26 123.6 122 51.6
SHI30029 Sapria himalayana HOM05D003161 ORTHO05D005173 2.0e-26 123.6 263 33.5
HPP92_027317 Vanilla planifolia HOM05D003161 ORTHO05D005173 3.4e-26 122.9 98 65.3
SalBow1G2678 Salvia bowleyana HOM05D003161 ORTHO05D005173 1.3e-25 120.9 221 37.1
AagrBONN_evm.TU.Sc2ySwM_340.243 Anthoceros agrestis HOM05D003161 ORTHO05D005173 1.1e-24 117.9 251 31.9
SMO137G0021 Selaginella moellendorffii HOM05D003161 ORTHO05D005173 3.6e-20 102.8 239 27.6
Pp3c4_30330 Physcomitrium patens HOM05D003161 ORTHO05D005173 1.3e-17 94.4 244 25.0
HanXRQChr13g0419181 Helianthus annuus HOM05D003161 ORTHO05D009435 1.6e-15 87.4 151 38.4
CAN.G1433.27 Capsicum annuum HOM05D003161 ORTHO05D005173 1.0e-14 84.7 137 37.2
CAN.G2759.1 Capsicum annuum HOM05D003161 ORTHO05D005173 1.9e-13 80.5 82 50.0
CSS0040264 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 1.4e-11 74.3 90 44.4
SMO083G0010 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 1.4e-11 74.3 198 26.8
SMO083G0001 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 6.9e-11 72.0 136 30.9
SMO111G0153 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 6.9e-11 72.0 145 29.7
MD14G1050000 Malus domestica HOM05D003161 ORTHO05D005173 1.2e-10 71.2 103 38.8
SMO111G0064 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 9.9e-10 68.2 155 28.4
SMO111G0027 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 8.4e-09 65.1 222 25.2
Cfa023914 Carpinus fangiana HOM05D003161 ORTHO05D005173 1.9e-08 63.9 229 22.7
SMO200G0255 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 7.1e-08 62.0 108 31.5
SMO111G0100 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 9.3e-08 61.6 77 41.6
HanXRQChr13g0388021 Helianthus annuus HOM05D003161 ORTHO05D005173 2.7e-07 60.1 82 41.5
SMO111G0203 Selaginella moellendorffii HOM05D001088 ORTHO05D013615 2.7e-07 60.1 151 27.2
Medtr3g069250 Medicago truncatula HOM05D003161 ORTHO05D013615 3.5e-07 59.7 100 36.0
unitig_744.g24086 Utricularia gibba HOM05D003161 ORTHO05D005173 3.5e-07 59.7 217 26.3
SMO140G0066 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 6.0e-07 58.9 108 36.1
PRCOL_00005658 Prasinoderma coloniale HOM05D003161 ORTHO05D005173 1.3e-06 57.8 273 20.1
SMO111G0113 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 3.0e-06 56.6 132 28.8
SMO140G0090 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 3.0e-06 56.6 126 29.4
Aqoxy2G00460 Aquilegia oxysepala HOM05D005887 ORTHO05D007694 8.7e-06 55.1 43 51.2


User provided reference genes

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