Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 1.4e-112 409.8 244 100.0
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 1.7e-65 253.4 195 82.1
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 1.7e-65 253.4 195 82.1
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 3.8e-65 252.3 195 81.5
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 1.1e-64 250.8 195 80.5
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 1.9e-64 250.0 201 82.6
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 2.5e-64 249.6 194 83.5
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 3.2e-64 249.2 196 82.1
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 4.2e-64 248.8 196 82.7
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 5.5e-64 248.4 195 79.5
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 7.2e-64 248.1 195 83.6
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 7.2e-64 248.1 195 83.1
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 9.4e-64 247.7 194 83.0
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 1.6e-63 246.9 195 84.6
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 1.6e-63 246.9 195 84.6
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 1.6e-63 246.9 195 84.6
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 1.6e-63 246.9 195 79.5
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 3.6e-63 245.7 195 82.6
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 6.1e-63 245.0 195 80.0
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 6.1e-63 245.0 202 78.7
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 6.1e-63 245.0 195 79.5
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 8.0e-63 244.6 195 84.6
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 1.0e-62 244.2 195 83.6
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 1.0e-62 244.2 196 80.1
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 1.0e-62 244.2 197 77.2
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.0e-62 244.2 196 79.6
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 1.4e-62 243.8 195 79.0
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 1.8e-62 243.4 195 84.6
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 2.3e-62 243.0 195 82.1
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 2.3e-62 243.0 195 82.1
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 2.3e-62 243.0 196 80.6
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 5.2e-62 241.9 195 80.5
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 5.2e-62 241.9 195 80.5
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 5.2e-62 241.9 195 78.5
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 6.7e-62 241.5 203 81.3
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 1.5e-61 240.4 194 77.3
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 1.5e-61 240.4 195 77.9
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 2.0e-61 240.0 194 80.4
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 2.6e-61 239.6 196 80.6
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 2.6e-61 239.6 195 77.4
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 3.3e-61 239.2 194 81.4
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 1.3e-60 237.3 197 79.2
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 1.3e-60 237.3 195 76.4
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 1.3e-60 237.3 195 82.1
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 1.7e-60 236.9 195 76.9
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 2.2e-60 236.5 195 76.9
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 6.3e-60 235.0 195 82.1
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.1e-59 234.2 196 80.1
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.1e-59 234.2 196 80.1
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.4e-59 233.8 195 83.1
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 1.8e-59 233.4 196 78.1
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.8e-59 233.4 196 82.7
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 1.8e-59 233.4 187 82.4
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 1.8e-59 233.4 200 72.0
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 2.4e-59 233.0 196 78.6
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 2.4e-59 233.0 196 83.2
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 2.4e-59 233.0 199 76.4
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 2.4e-59 233.0 195 76.9
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 2.4e-59 233.0 195 75.9
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 2.4e-59 233.0 195 77.4
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 4.1e-59 232.3 194 79.4
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 7.0e-59 231.5 195 82.6
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 7.0e-59 231.5 195 82.6
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 7.0e-59 231.5 196 81.6
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 9.1e-59 231.1 195 78.5
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 9.1e-59 231.1 196 80.6
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 9.1e-59 231.1 201 78.1
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 1.2e-58 230.7 196 71.9
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 3.5e-58 229.2 194 79.4
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 4.5e-58 228.8 193 82.4
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 4.5e-58 228.8 203 72.4
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 4.5e-58 228.8 203 72.4
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 7.7e-58 228.0 208 73.6
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 7.7e-58 228.0 196 73.5
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 7.7e-58 228.0 203 72.4
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 1.0e-57 227.6 194 78.4
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 1.3e-57 227.3 196 75.0
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 1.7e-57 226.9 197 78.2
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.2e-57 226.5 208 73.1
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.9e-57 226.1 208 73.1
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 2.9e-57 226.1 195 75.4
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 6.5e-57 224.9 201 79.1
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 1.5e-56 223.8 195 74.9
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 3.2e-56 222.6 238 64.3
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 5.5e-56 221.9 194 70.6
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 5.5e-56 221.9 194 72.2
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 1.6e-55 220.3 194 75.3
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 1.6e-55 220.3 194 74.2
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 2.1e-55 219.9 194 70.6
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 2.7e-55 219.5 147 82.3
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 4.7e-55 218.8 189 76.2
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 6.1e-55 218.4 194 74.2
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 1.4e-54 217.2 194 74.7
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 1.4e-54 217.2 195 73.8
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 1.2e-53 214.2 194 73.7
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 3.3e-53 212.6 195 73.3
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.3e-52 210.7 200 73.0
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.7e-52 210.3 160 86.9
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 2.2e-52 209.9 206 68.4
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 2.4e-51 206.5 197 68.0
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 4.1e-51 205.7 151 72.2
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 5.3e-51 205.3 164 81.1
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 2.7e-50 203.0 194 67.5
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 3.8e-49 199.1 195 68.2
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.1e-48 197.6 196 72.4
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 2.1e-47 193.4 205 54.1
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 2.1e-47 193.4 294 55.1
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.7e-47 193.0 147 67.3
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 2.6e-45 186.4 266 53.0
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 5.7e-45 185.3 143 66.4
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.4e-43 180.6 186 68.8
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 4.1e-43 179.1 129 71.3
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 2.3e-41 173.3 195 64.6
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 1.2e-39 167.5 202 55.9
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 2.8e-39 166.4 109 77.1
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 4.7e-39 165.6 226 52.7
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 4.7e-39 165.6 215 63.7
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 2.3e-38 163.3 195 52.3
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 8.9e-38 161.4 211 52.1
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 5.7e-37 158.7 159 71.1
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 1.7e-33 147.1 129 62.0
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.1e-32 144.4 141 63.1
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 9.5e-32 141.4 103 72.8
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.4e-30 137.5 204 60.3
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.9e-28 129.8 123 74.8
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.9e-27 127.1 118 64.4
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 7.8e-26 121.7 276 48.6
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 1.2e-21 107.8 226 48.7
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.9e-20 103.2 144 44.4
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 1.1e-14 84.7 210 38.6
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 2.6e-13 80.1 202 35.6
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 5.8e-13 79.0 98 68.4
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 2.4e-11 73.6 87 73.6


User provided reference genes

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