Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014763 Vanilla planifolia HOM05D007086 ORTHO05D008927 7.0e-29 129.8 60 100.0
Os05g0108500 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 4.1e-13 77.4 40 87.5
Os07g0573600 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 1.6e-12 75.5 40 85.0
Sed0003691 Sechium edule HOM05D007086 ORTHO05D008927 3.5e-12 74.3 40 80.0
Os05g0198700 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 4.6e-12 73.9 40 82.5
Atru.chr9.1458 Acer truncatum HOM05D007086 ORTHO05D008927 6.0e-12 73.6 40 77.5
ClCG00G001010 Citrullus lanatus HOM05D007086 ORTHO05D008927 6.0e-12 73.6 40 82.5
ClCG00G001020 Citrullus lanatus HOM05D000693 ORTHO05D001102 6.0e-12 73.6 40 82.5
MELO3C013994.2 Cucumis melo HOM05D000693 ORTHO05D001102 6.0e-12 73.6 40 82.5
MBI12_g10752_MAGBIO Magnolia biondii HOM05D007086 ORTHO05D008927 6.0e-12 73.6 40 80.0
GSVIVG01019940001 Vitis vinifera HOM05D007086 ORTHO05D008927 1.3e-11 72.4 40 77.5
CsaV3_3G003270 Cucumis sativus L. HOM05D007086 ORTHO05D008927 1.7e-11 72.0 40 80.0
Aqoxy7G00621 Aquilegia oxysepala HOM05D007086 ORTHO05D008927 2.3e-11 71.6 40 80.0
CSS0011774 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 2.3e-11 71.6 40 75.0
CSS0048716 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 2.3e-11 71.6 40 75.0
Potri.001G116000 Populus trichocarpa HOM05D007086 ORTHO05D008927 2.3e-11 71.6 40 75.0
Zm00001eb267070 Zea mays HOM05D007086 ORTHO05D008927 2.3e-11 71.6 38 86.8
TWI77G0094 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 3.0e-11 71.2 40 80.0
Cfa012029 Carpinus fangiana HOM05D007086 ORTHO05D008927 3.9e-11 70.9 40 75.0
MD04G1245800 Malus domestica HOM05D007086 ORTHO05D008927 3.9e-11 70.9 40 75.0
MD12G1192500 Malus domestica HOM05D007086 ORTHO05D008927 3.9e-11 70.9 40 75.0
Thecc.03G263200 Theobroma cacao HOM05D007086 ORTHO05D008927 3.9e-11 70.9 40 75.0
Prupe.5G081100 Prunus persica HOM05D007086 ORTHO05D008927 5.1e-11 70.5 40 75.0
Prupe.5G081200 Prunus persica HOM05D007086 ORTHO05D008927 5.1e-11 70.5 40 75.0
CANSAT21G1174 Cannabis sativa HOM05D007086 ORTHO05D008927 6.6e-11 70.1 38 73.7
Cpa.g.sc29.74 Carica papaya HOM05D007086 ORTHO05D008927 6.6e-11 70.1 40 72.5
Eucgr.E00483 Eucalyptus grandis HOM05D007086 ORTHO05D008927 6.6e-11 70.1 40 70.0
TWI60G0887 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 6.6e-11 70.1 40 80.0
Carub.0001s1205 Capsella rubella HOM05D007086 ORTHO05D008927 1.1e-10 69.3 38 76.3
Thhalv10009271m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 1.1e-10 69.3 40 75.0
FAN08G0246 Fragaria x ananassa HOM05D007086 ORTHO05D008927 1.1e-10 69.3 40 72.5
FAN18G4230 Fragaria x ananassa HOM05D001611 ORTHO05D001464 1.1e-10 69.3 40 72.5
PSO478G4385 Papaver somniferum HOM05D007086 ORTHO05D008927 1.1e-10 69.3 40 75.0
Rhsim02G0194900 Rhododendron simsii HOM05D007086 ORTHO05D008927 1.1e-10 69.3 38 73.7
THA.LOC104809439 Tarenaya hassleriana HOM05D007086 ORTHO05D008927 1.1e-10 69.3 40 75.0
Ciclev10024015m.g Citrus clementina HOM05D007086 ORTHO05D008927 1.5e-10 68.9 40 72.5
Sabra01G0089100 Salix brachista HOM05D007086 ORTHO05D008927 1.5e-10 68.9 40 72.5
BolC5t29822H Brassica oleracea HOM05D007086 ORTHO05D008927 1.9e-10 68.6 40 70.0
BraA06t24109Z Brassica rapa HOM05D007086 ORTHO05D008927 1.9e-10 68.6 40 70.0
Sp1g11000 Schrenkiella parvula HOM05D007086 ORTHO05D008927 1.9e-10 68.6 40 72.5
Actinidia05249 Actinidia chinensis HOM05D001611 ORTHO05D001464 2.5e-10 68.2 40 72.5
CDE11G0364 Ceratophyllum demersum HOM05D007086 ORTHO05D008927 2.5e-10 68.2 38 73.7
Sc01g0009150 Simmondsia chinensis HOM05D007086 ORTHO05D008927 2.5e-10 68.2 38 73.7
AL1G23730 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 3.3e-10 67.8 38 73.7
AT1G12400 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 3.3e-10 67.8 38 73.7
A08p32850 Brassica napus HOM05D001611 ORTHO05D001464 3.3e-10 67.8 40 72.5
Aa31LG1G2230 Aethionema arabicum HOM05D007086 ORTHO05D008927 4.3e-10 67.4 40 72.5
Duzib084G0284 Durio zibethinus HOM05D007086 ORTHO05D008927 4.3e-10 67.4 40 75.0
Manes.02G032611 Manihot esculenta HOM05D007086 ORTHO05D008927 4.3e-10 67.4 38 68.4
QL12p015352 Quercus lobata HOM05D007086 ORTHO05D008927 4.3e-10 67.4 38 73.7
RcHm_v2.0_Chr7g0201071 Rosa chinensis HOM05D007086 ORTHO05D008927 4.3e-10 67.4 40 72.5
Gohir.A12G221900 Gossypium hirsutum HOM05D007086 ORTHO05D008927 5.6e-10 67.0 40 75.0
Gohir.D12G224400 Gossypium hirsutum HOM05D007086 ORTHO05D008927 5.6e-10 67.0 40 75.0
Gorai.008G240500 Gossypium raimondii HOM05D007086 ORTHO05D008927 5.6e-10 67.0 40 75.0
Hma1.2p1_0367F.1_g137100 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 5.6e-10 67.0 40 72.5
Hma1.2p1_3825F.1_g337656 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 5.6e-10 67.0 40 72.5
Nn1g01223 Nelumbo nucifera HOM05D007086 ORTHO05D008927 5.6e-10 67.0 40 72.5
Rhsim07G0100800 Rhododendron simsii HOM05D007086 ORTHO05D008927 5.6e-10 67.0 40 72.5
AagrBONN_evm.TU.Sc2ySwM_362.2353 Anthoceros agrestis HOM05D002603 ORTHO05D008927 7.3e-10 66.6 38 73.7
CiPaw.11G146300 Carya illinoinensis HOM05D007086 ORTHO05D008927 7.3e-10 66.6 40 70.0
CARHR012690 Cardamine hirsuta HOM05D007086 ORTHO05D008927 9.5e-10 66.2 39 69.2
PSO782G0332 Papaver somniferum HOM05D007086 ORTHO05D008927 9.5e-10 66.2 38 76.3
Glyma.08G047000 Glycine max HOM05D007086 ORTHO05D008927 1.2e-09 65.9 38 71.1
Glyma.05G239900 Glycine max HOM05D007086 ORTHO05D008927 1.6e-09 65.5 38 71.1
C08p15410 Brassica napus HOM05D001611 ORTHO05D001464 2.1e-09 65.1 40 70.0
BolC8t49170H Brassica oleracea HOM05D007086 ORTHO05D008927 2.1e-09 65.1 40 70.0
BraA08t35207Z Brassica rapa HOM05D001611 ORTHO05D001464 2.1e-09 65.1 40 70.0
BcaB03g13189 Brassica carinata HOM05D007086 ORTHO05D008927 2.8e-09 64.7 40 70.0
Medtr5g055890 Medicago truncatula HOM05D007086 ORTHO05D008927 2.8e-09 64.7 40 67.5
Lj4g0021147 Lotus japonicus HOM05D007086 ORTHO05D008927 3.6e-09 64.3 38 68.4
TPR.G38364 Trifolium pratense HOM05D007086 ORTHO05D008927 3.6e-09 64.3 40 70.0
EL10Ac7g17105 Beta vulgaris HOM05D007086 ORTHO05D008927 6.2e-09 63.5 38 68.4
CAN.G630.56 Capsicum annuum HOM05D007086 ORTHO05D008927 6.2e-09 63.5 40 70.0
Solyc08g079610.3 Solanum lycopersicum HOM05D007086 ORTHO05D008927 6.2e-09 63.5 40 70.0
Sopen08g027960 Solanum pennellii HOM05D007086 ORTHO05D008927 6.2e-09 63.5 40 70.0
PGSC0003DMG400003953 Solanum tuberosum HOM05D007086 ORTHO05D008927 6.2e-09 63.5 40 70.0
PGSC0003DMG400019087 Solanum tuberosum HOM05D007086 ORTHO05D008927 6.2e-09 63.5 40 70.0
FAN12G2970 Fragaria x ananassa HOM05D007086 ORTHO05D008927 8.1e-09 63.2 40 67.5
FAN12G3233 Fragaria x ananassa HOM05D007086 ORTHO05D008927 8.1e-09 63.2 40 67.5
Dinv00491 Davidia involucrata HOM05D007086 ORTHO05D008927 1.1e-08 62.8 32 87.5
Nitab4.5_0005241g0010 Nicotiana tabacum HOM05D007086 ORTHO05D008927 1.1e-08 62.8 40 70.0
Phvul.009G128900 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 1.1e-08 62.8 40 67.5
Pp3c1_34050 Physcomitrium patens HOM05D007086 ORTHO05D008927 1.1e-08 62.8 38 68.4
Cc08_g13390 Coffea canephora HOM05D007086 ORTHO05D008927 1.4e-08 62.4 40 67.5
Lalb_Chr05g0222151 Lupinus albus HOM05D007086 ORTHO05D008927 1.8e-08 62.0 38 65.8
Phvul.002G322200 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 1.8e-08 62.0 38 68.4
PGR031G3010 Punica granatum HOM05D007086 ORTHO05D008927 1.8e-08 62.0 40 62.5
Lj4g0007995 Lotus japonicus HOM05D007086 ORTHO05D008927 2.3e-08 61.6 38 65.8
Potri.009G138800 Populus trichocarpa HOM05D007086 ORTHO05D008927 3.1e-08 61.2 38 63.2
SGA_v2.0_scaffold37G14847 Striga asiatica HOM05D007086 ORTHO05D008927 3.1e-08 61.2 39 66.7
SalBow6G6939 Salvia bowleyana HOM05D007086 ORTHO05D008927 4.0e-08 60.8 39 64.1
arahy.Tifrunner.gnm1.ann1.T092PF Arachis hypogaea HOM05D007086 ORTHO05D008927 5.2e-08 60.5 38 65.8
Nitab4.5_0000633g0050 Nicotiana tabacum HOM05D007086 ORTHO05D008927 6.8e-08 60.1 40 67.5
Nitab4.5_0007130g0020 Nicotiana tabacum HOM05D007086 ORTHO05D008927 6.8e-08 60.1 40 67.5
HanXRQChr02g0046221 Helianthus annuus HOM05D007086 ORTHO05D008927 8.9e-08 59.7 40 65.0
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 8.9e-08 59.7 35 68.6
Mapoly0088s0021 Marchantia polymorpha HOM05D007086 ORTHO05D008927 1.5e-07 58.9 38 60.5
Peaxi162Scf00051g00316 Petunia axillaris HOM05D007086 ORTHO05D008927 1.5e-07 58.9 40 65.0
Peaxi162Scf00078g00627 Petunia axillaris HOM05D007086 ORTHO05D008927 1.5e-07 58.9 40 65.0
Lsat_1_v5_gn_6_9641 Lactuca sativa HOM05D007086 ORTHO05D008927 4.4e-07 57.4 40 62.5
arahy.Tifrunner.gnm1.ann1.NIEM70 Arachis hypogaea HOM05D007086 ORTHO05D008927 7.6e-07 56.6 35 65.7
Migut.A00849 Erythranthe guttata HOM05D007086 ORTHO05D008927 1.3e-06 55.8 40 57.5
Migut.I00707 Erythranthe guttata HOM05D007086 ORTHO05D008927 1.3e-06 55.8 40 57.5
Lalb_Chr18g0049811 Lupinus albus HOM05D007086 ORTHO05D008927 1.3e-06 55.8 37 62.2
SEGI_31798 Sequoiadendron giganteum HOM05D007086 ORTHO05D008927 1.3e-06 55.8 40 60.0


User provided reference genes

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