Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014132 Vanilla planifolia HOM05D002024 ORTHO05D007288 2.1e-163 578.9 288 100.0
Zm00001eb322610 Zea mays HOM05D002024 ORTHO05D007288 4.6e-78 295.4 206 69.9
THA.LOC104826151 Tarenaya hassleriana HOM05D002024 ORTHO05D007288 7.9e-78 294.7 210 66.7
Sc06g0009580 Simmondsia chinensis HOM05D002024 ORTHO05D007288 6.7e-77 291.6 292 53.4
TAR627G0588 Trochodendron aralioides HOM05D002024 ORTHO05D007288 8.7e-77 291.2 214 67.8
Dinv05430 Davidia involucrata HOM05D002024 ORTHO05D007288 1.5e-76 290.4 226 65.0
Os07g0513100 Oryza sativa ssp. japonica HOM05D002024 ORTHO05D007288 1.9e-76 290.0 203 69.5
RcHm_v2.0_Chr2g0159251 Rosa chinensis HOM05D002024 ORTHO05D007288 1.9e-76 290.0 241 58.5
COL.COLO4_27729 Corchorus olitorius HOM05D002024 ORTHO05D007288 4.3e-76 288.9 222 62.6
Sp4g14790 Schrenkiella parvula HOM05D002024 ORTHO05D007288 4.3e-76 288.9 241 58.5
PGR042G3011 Punica granatum HOM05D002024 ORTHO05D007288 5.7e-76 288.5 257 56.0
Thecc.02G316100 Theobroma cacao HOM05D002024 ORTHO05D007288 5.7e-76 288.5 203 68.5
GSVIVG01030425001 Vitis vinifera HOM05D002024 ORTHO05D007288 5.7e-76 288.5 289 54.3
Haze_12862 Corylus avellana HOM05D002024 ORTHO05D007288 7.4e-76 288.1 274 56.9
Nn1g03510 Nelumbo nucifera HOM05D002024 ORTHO05D007288 9.7e-76 287.7 265 57.7
FAN14G2536 Fragaria x ananassa HOM05D002024 ORTHO05D007288 1.3e-75 287.3 275 54.5
BraA05t20260Z Brassica rapa HOM05D002024 ORTHO05D007288 1.6e-75 287.0 287 50.5
CiPaw.04G116100 Carya illinoinensis HOM05D002024 ORTHO05D007288 1.6e-75 287.0 234 62.8
Hund06720 Selenicereus undatus HOM05D002024 ORTHO05D007288 2.2e-75 286.6 262 53.8
HanXRQChr16g0504911 Helianthus annuus HOM05D002024 ORTHO05D007288 2.8e-75 286.2 282 55.3
ATR0794G134 Amborella trichopoda HOM05D002024 ORTHO05D007288 3.7e-75 285.8 186 73.1
BcaC02g11322 Brassica carinata HOM05D002024 ORTHO05D007288 3.7e-75 285.8 237 58.2
C04p17230 Brassica napus HOM05D002024 ORTHO05D007288 3.7e-75 285.8 237 58.2
BolC4t23275H Brassica oleracea HOM05D002024 ORTHO05D007288 3.7e-75 285.8 237 58.2
MBI18_g03588_MAGBIO Magnolia biondii HOM05D002024 ORTHO05D007288 3.7e-75 285.8 219 64.4
FAN05G4210 Fragaria x ananassa HOM05D002024 ORTHO05D007288 4.8e-75 285.4 276 54.3
Gohir.A04G144700 Gossypium hirsutum HOM05D002024 ORTHO05D007288 4.8e-75 285.4 203 68.5
Gohir.D04G189200 Gossypium hirsutum HOM05D002024 ORTHO05D007288 4.8e-75 285.4 203 68.5
Gorai.012G184500 Gossypium raimondii HOM05D002024 ORTHO05D007288 4.8e-75 285.4 203 68.5
SalBow7G2680 Salvia bowleyana HOM05D002024 ORTHO05D007288 4.8e-75 285.4 202 69.3
AT2G32415 Arabidopsis thaliana HOM05D002024 ORTHO05D007288 6.3e-75 285.0 244 57.0
Thhalv10016228m.g Eutrema salsugineum HOM05D002024 ORTHO05D007288 1.1e-74 284.3 226 60.2
Ca_30385_v3 Cicer arietinum L. HOM05D002024 ORTHO05D007288 1.4e-74 283.9 204 67.6
CDE05G2902 Ceratophyllum demersum HOM05D002024 ORTHO05D007288 2.4e-74 283.1 224 62.1
Duzib248G0941 Durio zibethinus HOM05D002024 ORTHO05D007288 2.4e-74 283.1 215 65.6
VMungo1127G2134 Vigna mungo HOM05D002024 ORTHO05D007288 2.4e-74 283.1 256 56.6
FvH4_6g43150 Fragaria vesca HOM05D002024 ORTHO05D007288 3.1e-74 282.7 276 54.3
QL08p033036 Quercus lobata HOM05D002024 ORTHO05D007288 4.1e-74 282.3 260 57.3
Rhsim06G0162700 Rhododendron simsii HOM05D002024 ORTHO05D007288 5.3e-74 282.0 262 56.1
AL4G27810 Arabidopsis lyrata HOM05D002024 ORTHO05D007288 6.9e-74 281.6 244 55.7
ClCG02G001940 Citrullus lanatus HOM05D002024 ORTHO05D007288 6.9e-74 281.6 219 62.1
PSO675G1279 Papaver somniferum HOM05D002024 ORTHO05D007288 6.9e-74 281.6 229 62.9
TWI36G0154 Tripterygium wilfordii HOM05D002024 ORTHO05D007288 6.9e-74 281.6 193 70.5
CARHR126240 Cardamine hirsuta HOM05D002024 ORTHO05D007288 9.0e-74 281.2 212 62.3
Cpa.g.sc87.78 Carica papaya HOM05D002024 ORTHO05D007288 1.2e-73 280.8 193 68.4
BcaB06g28594 Brassica carinata HOM05D002024 ORTHO05D007288 1.5e-73 280.4 239 56.5
Sed0008958 Sechium edule HOM05D002024 ORTHO05D007288 1.5e-73 280.4 234 60.3
CSS0021724 Camellia sinensis var. sinensis HOM05D002024 ORTHO05D007288 2.0e-73 280.0 203 67.5
Aqoxy1G02138 Aquilegia oxysepala HOM05D002024 ORTHO05D007288 3.4e-73 279.3 214 62.6
A05p13190 Brassica napus HOM05D002024 ORTHO05D007288 3.4e-73 279.3 237 58.6
Carub.0004s1377 Capsella rubella HOM05D002024 ORTHO05D007288 3.4e-73 279.3 234 58.1
Medtr4g048230 Medicago truncatula HOM05D002024 ORTHO05D007288 3.4e-73 279.3 206 65.0
Potri.002G229000 Populus trichocarpa HOM05D002024 ORTHO05D007288 3.4e-73 279.3 239 61.1
Sed0017029 Sechium edule HOM05D002024 ORTHO05D007288 4.5e-73 278.9 191 69.1
Lsat_1_v5_gn_7_92221 Lactuca sativa HOM05D002024 ORTHO05D007288 5.9e-73 278.5 250 58.0
PSO541G4901 Papaver somniferum HOM05D002024 ORTHO05D007288 5.9e-73 278.5 229 62.9
Actinidia09716 Actinidia chinensis HOM05D002024 ORTHO05D007288 7.7e-73 278.1 186 71.5
Actinidia27264 Actinidia chinensis HOM05D002024 ORTHO05D007288 7.7e-73 278.1 186 71.5
Aa31LG5G4860 Aethionema arabicum HOM05D002024 ORTHO05D007288 1.0e-72 277.7 194 68.0
CsaV3_7G003570 Cucumis sativus L. HOM05D002024 ORTHO05D007288 1.0e-72 277.7 216 62.5
Migut.M00437 Erythranthe guttata HOM05D002024 ORTHO05D007288 1.0e-72 277.7 221 63.3
Glyma.06G305900 Glycine max HOM05D002024 ORTHO05D007288 1.0e-72 277.7 221 61.5
Lj8A125T72 Lonicera japonica HOM05D002024 ORTHO05D007288 1.0e-72 277.7 269 52.4
vmacro12202 Vaccinium macrocarpon HOM05D002024 ORTHO05D007288 1.0e-72 277.7 214 64.5
Oeu019888.4 Olea europaea HOM05D002024 ORTHO05D007288 1.3e-72 277.3 249 57.8
arahy.Tifrunner.gnm1.ann1.3TL5KL Arachis hypogaea HOM05D002024 ORTHO05D007288 2.2e-72 276.6 191 67.5
FAN09G4217 Fragaria x ananassa HOM05D002024 ORTHO05D007288 2.2e-72 276.6 279 53.4
BcaC02g07923 Brassica carinata HOM05D002024 ORTHO05D007288 2.9e-72 276.2 187 67.9
C04p61920 Brassica napus HOM05D002024 ORTHO05D007288 2.9e-72 276.2 187 67.9
arahy.Tifrunner.gnm1.ann1.FW4LSX Arachis hypogaea HOM05D002024 ORTHO05D007288 3.8e-72 275.8 191 68.6
CANSAT64G1657 Cannabis sativa HOM05D002024 ORTHO05D007288 5.0e-72 275.4 237 59.9
MELO3C018818.2 Cucumis melo HOM05D002024 ORTHO05D007288 5.0e-72 275.4 192 67.7
MD09G1109200 Malus domestica HOM05D002024 ORTHO05D007288 5.0e-72 275.4 196 65.3
Manes.12G066500 Manihot esculenta HOM05D002024 ORTHO05D007288 5.0e-72 275.4 186 70.4
BolC4t27671H Brassica oleracea HOM05D002024 ORTHO05D007288 6.5e-72 275.0 187 67.4
Eucgr.A01124 Eucalyptus grandis HOM05D002024 ORTHO05D007288 6.5e-72 275.0 253 57.3
Lalb_Chr19g0135891 Lupinus albus HOM05D002024 ORTHO05D007288 6.5e-72 275.0 192 67.7
BraA04t18006Z Brassica rapa HOM05D002024 ORTHO05D007288 8.5e-72 274.6 242 55.4
Psat7g157200 Pisum sativum HOM05D002024 ORTHO05D007288 8.5e-72 274.6 204 65.2
AUR62025026 Chenopodium quinoa HOM05D002024 ORTHO05D007288 1.1e-71 274.2 275 51.3
Dinv39713 Davidia involucrata HOM05D002024 ORTHO05D007288 1.1e-71 274.2 268 54.1
A04p24930 Brassica napus HOM05D002024 ORTHO05D007288 1.4e-71 273.9 241 54.8
TPR.G4605 Trifolium pratense HOM05D002024 ORTHO05D007288 1.4e-71 273.9 204 65.2
Ca_12394_v3 Cicer arietinum L. HOM05D002024 ORTHO05D007288 1.9e-71 273.5 204 66.7
Lj3g0021786 Lotus japonicus HOM05D002024 ORTHO05D007288 2.5e-71 273.1 222 61.7
Nitab4.5_0002137g0070 Nicotiana tabacum HOM05D002024 ORTHO05D007288 2.5e-71 273.1 245 56.7
Phvul.011G103500 Phaseolus vulgaris HOM05D002024 ORTHO05D007288 3.2e-71 272.7 253 55.7
unitig_899.g15271 Utricularia gibba HOM05D002024 ORTHO05D007288 3.2e-71 272.7 191 68.1
Sabra02G0175000 Salix brachista HOM05D002024 ORTHO05D007288 5.5e-71 271.9 197 67.5
Ciclev10014176m.g Citrus clementina HOM05D002024 ORTHO05D007288 1.6e-70 270.4 238 60.9
Cc05_g04580 Coffea canephora HOM05D002024 ORTHO05D007288 1.8e-69 266.9 248 55.6
CAN.G1740.3 Capsicum annuum HOM05D002024 ORTHO05D007288 6.7e-69 265.0 185 66.5
Sopen07g025960 Solanum pennellii HOM05D002024 ORTHO05D007288 1.1e-68 264.2 185 67.6
Solyc07g052340.4 Solanum lycopersicum HOM05D002024 ORTHO05D007288 1.5e-68 263.8 200 63.0
EL10Ac9g20670 Beta vulgaris HOM05D002024 ORTHO05D007288 2.6e-68 263.1 224 58.5
Nitab4.5_0004417g0080 Nicotiana tabacum HOM05D002024 ORTHO05D007288 3.7e-67 259.2 237 56.5
FAN02G4513 Fragaria x ananassa HOM05D002024 ORTHO05D007288 1.1e-66 257.7 276 51.1
Peaxi162Scf00007g00832 Petunia axillaris HOM05D002024 ORTHO05D007288 4.1e-66 255.8 177 67.2
Pp3c18_1700 Physcomitrium patens HOM05D002024 ORTHO05D007288 1.2e-62 244.2 184 62.0
Hma1.2p1_0249F.1_g102286 Hydrangea macrophylla HOM05D002024 ORTHO05D007288 8.8e-61 238.0 149 75.2
Mapoly0006s0210 Marchantia polymorpha HOM05D002024 ORTHO05D007288 3.3e-60 236.1 184 59.8
DCAR_019765 Daucus carota HOM05D002024 ORTHO05D007288 7.4e-60 235.0 173 63.6
SEGI_37667 Sequoiadendron giganteum HOM05D002024 ORTHO05D007288 1.6e-57 227.3 147 70.7
Prupe.3G217000 Prunus persica HOM05D002024 ORTHO05D007288 5.5e-55 218.8 227 51.1
CBR_g39322 Chara braunii HOM05D002024 ORTHO05D007288 2.7e-54 216.5 209 54.5
ECA236G2373 Erigeron canadensis HOM05D002024 ORTHO05D007288 4.2e-47 192.6 193 53.4
ECA238G0106 Erigeron canadensis HOM05D000014 ORTHO05D007288 8.3e-43 178.3 186 46.2
Cre03.g145767 Chlamydomonas reinhardtii HOM05D002024 ORTHO05D007288 1.2e-22 111.3 91 54.9
Atru.chr6.3187 Acer truncatum HOM05D002024 ORTHO05D007288 3.2e-18 96.7 112 45.5
Cre10.g451300 Chlamydomonas reinhardtii HOM05D002024 ORTHO05D007288 3.9e-16 89.7 134 35.8
Glyma.12G098733 Glycine max HOM05D002024 ORTHO05D007288 7.5e-12 75.5 147 35.4


User provided reference genes

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