Gene: Solyc07g052340.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc07g052340.4
  • Transcript Identifier Solyc07g052340.4.1
  • Gene Type Coding gene
  • Location SL4.0ch07 : 60750352-60761306 : positive

Gene Family Information

  • ID HOM05D002024
  • #Genes/#Species 327/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc07g052340.4.1
  • uniprot A0A3Q7HB25
  • gene_id Solyc07g052340

Descriptions

  • Description Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein (AHRD V3.3 *** F4ITQ7_ARATH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071035
IBA
GOA Databasenuclear polyadenylation-dependent rRNA catabolic process
GO:0000467
IBA
IEA
GOA Databaseexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000467
IEA
InterProexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0071051
IBA
GOA Databasepolyadenylation-dependent snoRNA 3'-end processing
GO:0071048
IBA
GOA Databasenuclear retention of unspliced pre-mRNA at the site of transcription
GO:0071044
IBA
GOA Databasehistone mRNA catabolic process
GO:0071040
IBA
GOA Databasenuclear polyadenylation-dependent antisense transcript catabolic process
GO:0071039
IBA
GOA Databasenuclear polyadenylation-dependent CUT catabolic process
GO:0071038
IBA
GOA Databasenuclear polyadenylation-dependent tRNA catabolic process
GO:0071037
IBA
GOA Databasenuclear polyadenylation-dependent snRNA catabolic process
GO:0071036
IBA
GOA Databasenuclear polyadenylation-dependent snoRNA catabolic process
GO:0006139
IEA
GOA Databasenucleobase-containing compound metabolic process
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:0044237
IEA
GOA Databasecellular metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000175
IBA
IEA
GOA Database3'-5'-exoribonuclease activity
GO:0000175
IEA
InterPro3'-5'-exoribonuclease activity
GO:0003727
IBA
GOA Databasesingle-stranded RNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0008408
IEA
GOA Database3'-5' exonuclease activity
GO:0008408
IEA
InterPro3'-5' exonuclease activity
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT2G32415
GO:0005730
IBA
GOA Databasenucleolus
GO:0000176
IBA
GOA Databasenuclear exosome (RNase complex)
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002562 3'-5' exonuclease domain
IPR045092 Exosome complex exonuclease Rrp6-like
IPR036397 Ribonuclease H superfamily
IPR012337 Ribonuclease H-like superfamily
Mapman id Description
16.4.1.2.1 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.exoribonuclease (RRP6L)