Gene: Sopen07g025960

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen07g025960
  • Transcript Identifier Sopen07g025960.1
  • Gene Type Coding gene
  • Location Spenn-ch07 : 71765498-71776164 : positive

Gene Family Information

  • ID HOM05D002024
  • #Genes/#Species 327/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen07g025960.1

Descriptions

  • Description Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain | FUNCTIONS IN: 3-5 exonuclease activity, nucleic acid binding | INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | LOCATED IN: intracellular | EXPRESSED IN: shoot apex | CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold , Helicase/RNase D C-terminal, HRDC domain , 3-5 exonuclease | BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain ., 3-5 exonuclease domain
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:0000467
IEA
InterProexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0044237
IEA
InterProcellular metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0008408
IEA
InterPro3'-5' exonuclease activity
GO:0000175
IEA
InterPro3'-5'-exoribonuclease activity
GO:0000166
IEA
InterPronucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT2G32415

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002562 3'-5' exonuclease domain
IPR045092 Exosome complex exonuclease Rrp6-like
IPR036397 Ribonuclease H superfamily
IPR002121 HRDC domain
IPR012337 Ribonuclease H-like superfamily
IPR044876 HRDC domain superfamily
IPR010997 HRDC-like superfamily
Mapman id Description
16.4.1.2.1 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.exoribonuclease (RRP6L)