Gene: PGR042G3011

General Information

Structural Information

  • Species Punica granatum
  • Gene Identifier PGR042G3011
  • Transcript Identifier PGR042G3011.03
  • Gene Type Coding gene
  • Location NC_045130.1 : 36880848-36886376 : negative

Gene Family Information

  • ID HOM05D002024
  • #Genes/#Species 327/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pid XP_031391186.1
  • name LOC116203561
  • name XM_031535326.1
  • id gene-LOC116203561
  • uniprot A0A6P8DCG7

Descriptions

  • product protein RRP6-like 3, transcript variant X3
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006139
IEA
GOA Databasenucleobase-containing compound metabolic process
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:0000467
IEA
GOA Databaseexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000467
IEA
InterProexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0044237
IEA
GOA Databasecellular metabolic process
GO:0044237
IEA
InterProcellular metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0008408
IEA
GOA Database3'-5' exonuclease activity
GO:0008408
IEA
InterPro3'-5' exonuclease activity
GO:0000175
IEA
GOA Database3'-5'-exoribonuclease activity
GO:0000175
IEA
InterPro3'-5'-exoribonuclease activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0000166
IEA
InterPronucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT2G32415

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012337 Ribonuclease H-like superfamily
IPR002562 3'-5' exonuclease domain
IPR045092 Exosome complex exonuclease Rrp6-like
IPR036397 Ribonuclease H superfamily
IPR044876 HRDC domain superfamily
IPR010997 HRDC-like superfamily
IPR002121 HRDC domain
Mapman id Description
16.4.1.2.1 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.exoribonuclease (RRP6L)