Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 6.4e-41 170.2 82 100.0
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 6.4e-41 170.2 82 100.0
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 5.8e-18 94.0 84 54.8
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 3.8e-17 91.3 85 56.5
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 3.8e-17 91.3 85 56.5
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 1.4e-16 89.4 76 61.8
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 3.2e-16 88.2 68 67.6
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 5.5e-16 87.4 77 57.1
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 5.5e-16 87.4 78 60.3
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 7.1e-16 87.0 80 55.0
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 1.6e-15 85.9 85 50.6
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 4.6e-15 84.3 86 51.2
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 6.0e-15 84.0 76 59.2
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 6.0e-15 84.0 85 49.4
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 6.0e-15 84.0 52 75.0
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 7.9e-15 83.6 66 62.1
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 7.9e-15 83.6 47 78.7
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 1.0e-14 83.2 80 51.2
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 1.3e-14 82.8 86 51.2
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 1.3e-14 82.8 85 49.4
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 1.3e-14 82.8 85 49.4
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.3e-14 82.8 81 53.1
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 1.3e-14 82.8 43 86.0
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 1.8e-14 82.4 71 59.2
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 2.3e-14 82.0 80 51.2
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 2.3e-14 82.0 76 57.9
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 3.0e-14 81.6 74 55.4
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 3.9e-14 81.3 78 56.4
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 3.9e-14 81.3 84 51.2
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 3.9e-14 81.3 81 50.6
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 5.1e-14 80.9 44 81.8
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 5.1e-14 80.9 84 48.8
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 5.1e-14 80.9 75 60.0
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 5.1e-14 80.9 57 64.9
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 5.1e-14 80.9 85 49.4
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 5.1e-14 80.9 43 83.7
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 5.1e-14 80.9 74 58.1
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 6.7e-14 80.5 74 55.4
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 6.7e-14 80.5 78 55.1
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 6.7e-14 80.5 81 54.3
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 6.7e-14 80.5 43 83.7
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 6.7e-14 80.5 43 83.7
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 6.7e-14 80.5 57 66.7
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 6.7e-14 80.5 75 54.7
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 8.7e-14 80.1 74 55.4
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 8.7e-14 80.1 75 60.0
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 8.7e-14 80.1 74 56.8
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 8.7e-14 80.1 43 81.4
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 8.7e-14 80.1 81 54.3
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 1.1e-13 79.7 76 53.9
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 1.1e-13 79.7 80 51.2
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 1.1e-13 79.7 44 81.8
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 1.1e-13 79.7 74 55.4
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 1.5e-13 79.3 78 48.7
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 1.5e-13 79.3 43 81.4
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 1.9e-13 79.0 73 53.4
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 1.9e-13 79.0 78 52.6
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 1.9e-13 79.0 73 58.9
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 1.9e-13 79.0 81 51.9
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 2.5e-13 78.6 42 81.0
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 2.5e-13 78.6 44 79.5
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 2.5e-13 78.6 77 53.2
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 2.5e-13 78.6 54 66.7
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 3.3e-13 78.2 78 53.8
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 3.3e-13 78.2 54 66.7
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 4.3e-13 77.8 75 58.7
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 4.3e-13 77.8 82 48.8
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 4.3e-13 77.8 80 52.5
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 4.3e-13 77.8 85 50.6
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 5.7e-13 77.4 81 50.6
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 5.7e-13 77.4 78 48.7
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 7.4e-13 77.0 43 76.7
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 9.6e-13 76.6 78 48.7
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 9.6e-13 76.6 73 56.2
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 9.6e-13 76.6 79 50.6
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 9.6e-13 76.6 53 69.8
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 9.6e-13 76.6 80 45.0
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 9.6e-13 76.6 75 53.3
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 1.6e-12 75.9 44 79.5
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 1.6e-12 75.9 43 76.7
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 1.6e-12 75.9 43 74.4
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 1.6e-12 75.9 43 81.4
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.6e-12 75.9 54 64.8
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 2.1e-12 75.5 51 68.6
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 4.8e-12 74.3 83 49.4
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 4.8e-12 74.3 42 76.2
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 1.1e-11 73.2 74 54.1
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 1.1e-11 73.2 43 74.4
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 1.4e-11 72.8 43 76.7
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 1.4e-11 72.8 81 50.6
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 1.4e-11 72.8 75 52.0
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 1.4e-11 72.8 75 52.0
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 1.4e-11 72.8 81 50.6
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 2.4e-11 72.0 43 76.7
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 2.4e-11 72.0 43 76.7
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 3.1e-11 71.6 43 76.7
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 4.0e-11 71.2 74 47.3
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 5.3e-11 70.9 43 74.4
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 5.3e-11 70.9 43 74.4
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 9.0e-11 70.1 43 67.4
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 1.5e-10 69.3 43 69.8
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 4.5e-10 67.8 43 74.4
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 5.8e-10 67.4 44 72.7
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 5.0e-09 64.3 74 48.6
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 7.1e-08 60.5 40 77.5


User provided reference genes

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