Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 0.0e+00 1905.6 964 100.0
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 1159.1 966 64.0
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1142.5 965 63.1
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 1139.0 1018 60.7
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 1138.6 1005 60.3
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 1134.4 1018 60.6
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 1117.8 983 61.0
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 1116.3 1005 60.0
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 1114.0 950 62.2
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 1110.5 1003 59.8
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 1109.7 978 60.7
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1109.4 984 61.2
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 1106.7 957 62.1
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 1104.0 1006 59.0
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1102.8 943 62.6
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1101.3 908 64.1
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 1100.1 971 60.4
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 1099.7 1015 59.5
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 1092.4 911 61.7
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 1089.3 1000 59.3
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 1089.3 1004 59.1
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1087.8 976 60.1
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 1087.4 1005 59.4
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 1087.0 1017 58.0
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 1083.9 1019 58.6
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 1083.2 1004 58.5
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 1081.2 985 59.0
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 1080.9 942 61.7
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1079.7 991 59.9
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 1078.9 1016 57.5
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1077.8 992 59.2
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 6.6e-312 1073.9 1006 59.0
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 3.3e-311 1071.6 1001 58.4
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 4.6e-311 1071.2 967 60.0
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 7.9e-311 1070.5 996 58.1
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 7.9e-311 1070.5 1008 58.4
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.3e-310 1069.7 1012 58.9
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 3.8e-310 1068.1 1019 57.7
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 5.0e-310 1067.8 961 59.6
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 8.5e-310 1067.0 1018 57.7
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 1.5e-309 1066.2 1020 57.1
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 3.2e-309 1065.1 961 58.4
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 3.2e-309 1065.1 1004 57.5
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 3.2e-309 1065.1 999 58.1
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 6.1e-308 1060.8 1006 56.7
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 6.1e-308 1060.8 990 59.1
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 1.0e-307 1060.1 1011 57.3
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 4.0e-307 1058.1 1013 57.3
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 5.2e-307 1057.7 949 60.3
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 8.8e-307 1057.0 1042 56.2
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 1.1e-306 1056.6 948 60.1
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 1.5e-306 1056.2 1002 58.3
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 2.0e-306 1055.8 1002 58.1
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 7.5e-306 1053.9 1002 58.2
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 1.3e-305 1053.1 1005 57.7
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 1.7e-305 1052.7 1002 57.9
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 4.8e-305 1051.2 908 61.1
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 8.2e-305 1050.4 930 60.5
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 1.8e-304 1049.3 934 61.2
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 2.4e-304 1048.9 994 58.4
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 3.1e-304 1048.5 1001 57.4
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 5.3e-304 1047.7 999 55.8
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 5.3e-304 1047.7 999 55.8
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 9.1e-304 1047.0 943 60.3
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 3.5e-303 1045.0 966 58.2
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 3.5e-303 1045.0 1001 57.7
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 1.7e-302 1042.7 1064 55.5
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 2.2e-302 1042.3 956 57.1
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 2.9e-302 1042.0 980 58.6
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 5.0e-302 1041.2 1011 56.2
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 6.5e-302 1040.8 959 57.2
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 1.1e-301 1040.0 972 57.6
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 1.9e-301 1039.3 931 60.0
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 5.5e-301 1037.7 1002 54.8
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 7.2e-301 1037.3 958 57.1
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 9.4e-301 1036.9 958 57.3
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 2.7e-300 1035.4 958 57.2
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 2.7e-300 1035.4 935 59.8
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 2.3e-299 1032.3 965 56.1
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 5.2e-299 1031.2 998 55.4
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 5.2e-299 1031.2 998 55.4
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 1.2e-298 1030.0 964 56.2
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 1.2e-298 1030.0 963 56.3
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 3.4e-298 1028.5 983 57.5
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 1.7e-297 1026.2 1043 54.7
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 2.2e-297 1025.8 947 58.8
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 2.2e-294 1015.8 948 57.7
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 1.9e-293 1012.7 944 57.9
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 4.0e-291 1005.0 1002 56.4
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 9.2e-288 993.8 883 59.9
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 6.6e-286 987.6 1002 54.4
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 4.7e-284 981.5 1069 52.5
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 6.8e-283 977.6 930 57.8
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 1.5e-282 976.5 777 65.5
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 3.3e-277 958.7 873 57.8
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 6.8e-267 924.5 1031 50.7
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 1.7e-257 893.3 997 49.9
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 3.0e-254 882.5 963 51.3
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 4.5e-242 842.0 980 49.1
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 4.9e-241 838.6 963 49.7
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 1.1e-197 694.5 578 61.8
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 1.2e-186 657.9 938 42.1
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 1.8e-158 564.3 434 66.1
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 2.8e-151 540.4 401 68.8
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 3.2e-147 526.9 323 84.8
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 1.9e-144 517.7 476 55.7
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 4.1e-139 500.0 556 51.1
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 4.0e-134 483.4 365 66.0
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 5.3e-126 456.4 494 49.4
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 2.3e-121 441.0 463 55.5
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.5e-117 428.3 384 64.8
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 3.8e-116 423.7 490 51.4
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 8.2e-111 406.0 496 49.8
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 5.3e-110 403.3 557 43.6
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.8e-94 351.7 283 62.5
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.5e-93 348.6 500 43.2
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.1e-91 342.4 336 53.9
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 1.9e-83 315.1 298 55.0
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 9.7e-72 276.2 376 46.0
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 2.8e-71 274.6 211 68.2
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 1.7e-68 265.4 272 54.0
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 1.6e-50 205.7 871 24.3
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 1.9e-46 192.2 418 30.9
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 5.0e-44 184.1 101 94.1
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 7.8e-37 160.2 120 64.2
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 1.7e-31 142.5 158 50.0
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 3.2e-30 138.3 162 49.4
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 7.8e-29 133.7 228 41.2
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 8.4e-23 113.6 70 80.0
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 2.1e-21 109.0 79 67.1
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 7.3e-19 100.5 99 50.5
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 9.6e-19 100.1 107 48.6
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 4.7e-18 97.8 101 48.5
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 8.1e-18 97.1 146 41.8
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 2.0e-16 92.4 80 61.2
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 1.4e-14 86.3 107 47.7
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 4.2e-14 84.7 107 46.7
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 9.3e-14 83.6 59 64.4
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 2.1e-13 82.4 90 46.7
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 3.1e-09 68.6 53 58.5
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.5e-08 66.2 63 58.7


User provided reference genes

Program Settings