Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.4e-159 565.5 286 100.0
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.7e-117 426.4 384 64.8
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 1.8e-50 203.8 395 37.2
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 5.3e-50 202.2 398 38.2
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 9.0e-50 201.4 377 38.5
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 1.3e-48 197.6 396 38.1
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 8.5e-48 194.9 394 36.5
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 1.1e-47 194.5 404 36.4
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 9.4e-47 191.4 385 36.9
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 7.4e-44 181.8 398 35.4
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 9.7e-44 181.4 387 34.6
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 1.7e-43 180.6 416 35.1
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 2.2e-43 180.3 420 33.8
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.1e-42 177.9 419 33.7
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 1.1e-42 177.9 441 33.3
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 1.4e-42 177.6 415 34.2
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 1.4e-42 177.6 411 34.1
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 1.8e-42 177.2 443 33.6
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 2.4e-42 176.8 369 36.9
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 4.1e-42 176.0 434 32.9
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 9.1e-42 174.9 439 31.0
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 2.0e-41 173.7 438 31.7
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 5.9e-41 172.2 391 34.3
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 7.7e-41 171.8 441 32.4
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 2.9e-40 169.9 443 32.3
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 5.0e-40 169.1 417 33.6
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 1.1e-39 167.9 421 32.8
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 1.9e-39 167.2 450 30.7
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 3.2e-39 166.4 441 31.1
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 3.2e-39 166.4 441 32.0
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 3.2e-39 166.4 441 31.1
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 5.5e-39 165.6 426 31.5
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 5.5e-39 165.6 441 31.3
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 7.2e-39 165.2 416 32.0
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 7.2e-39 165.2 434 31.6
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 9.4e-39 164.9 438 31.7
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 1.2e-38 164.5 400 33.8
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 1.2e-38 164.5 441 31.1
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 2.7e-38 163.3 429 31.7
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 3.6e-38 162.9 418 32.1
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 3.6e-38 162.9 445 31.9
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 1.0e-37 161.4 415 32.3
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 1.0e-37 161.4 441 31.5
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 1.8e-37 160.6 446 31.4
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 1.8e-37 160.6 446 31.6
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 1.8e-37 160.6 422 32.0
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 2.3e-37 160.2 431 32.5
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 3.0e-37 159.8 310 35.8
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 3.9e-37 159.5 430 31.9
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 5.2e-37 159.1 444 30.6
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 5.2e-37 159.1 446 31.4
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 8.8e-37 158.3 443 30.9
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 8.8e-37 158.3 445 30.6
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 1.1e-36 157.9 429 31.5
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 1.5e-36 157.5 415 31.3
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 2.0e-36 157.1 443 30.7
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 2.6e-36 156.8 426 32.2
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 4.4e-36 156.0 445 30.6
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 4.4e-36 156.0 425 31.5
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 5.7e-36 155.6 416 31.7
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 7.4e-36 155.2 441 30.2
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 9.7e-36 154.8 444 30.6
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 9.7e-36 154.8 412 32.0
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 1.3e-35 154.5 423 31.4
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 1.3e-35 154.5 417 31.4
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 1.7e-35 154.1 452 30.1
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 1.7e-35 154.1 424 32.3
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 2.8e-35 153.3 429 30.8
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 2.8e-35 153.3 446 30.0
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 2.8e-35 153.3 423 32.4
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 3.7e-35 152.9 435 30.8
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 4.8e-35 152.5 417 31.2
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 4.8e-35 152.5 416 31.2
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 1.1e-34 151.4 440 29.5
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 1.4e-34 151.0 444 29.3
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 3.1e-34 149.8 440 29.3
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 3.1e-34 149.8 402 32.1
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 4.1e-34 149.4 402 31.1
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 5.3e-34 149.1 461 29.1
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 5.3e-34 149.1 437 30.9
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 7.0e-34 148.7 444 29.3
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 7.0e-34 148.7 441 29.3
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 7.0e-34 148.7 444 29.3
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 2.6e-33 146.7 440 29.1
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 5.9e-33 145.6 444 28.4
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 7.7e-33 145.2 441 28.1
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 7.7e-33 145.2 449 28.7
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 7.7e-33 145.2 350 32.6
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 1.7e-32 144.1 449 29.4
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 2.2e-32 143.7 440 28.6
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 3.8e-32 142.9 442 28.7
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 3.8e-32 142.9 442 28.7
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 6.5e-32 142.1 429 31.0
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 7.2e-31 138.7 448 27.7
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 7.2e-31 138.7 383 31.3
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 2.1e-30 137.1 111 63.1
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 4.0e-29 132.9 383 30.8
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 2.0e-28 130.6 379 30.6
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 2.6e-28 130.2 345 32.8
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 9.7e-28 128.3 116 55.2
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.3e-27 127.9 108 60.2
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.7e-27 127.5 311 32.8
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 1.7e-27 127.5 126 53.2
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.7e-27 127.5 366 31.1
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 2.2e-27 127.1 412 29.4
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 2.0e-25 120.6 401 29.2
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 8.0e-22 108.6 160 41.2
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 1.8e-21 107.5 135 44.4
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 4.1e-18 96.3 367 25.3
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 1.0e-16 91.7 333 27.6
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 7.2e-15 85.5 173 38.7
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 7.2e-15 85.5 220 33.2
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 3.4e-12 76.6 173 35.3
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 2.4e-10 70.5 172 35.5
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 3.1e-10 70.1 62 58.1
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 2.1e-06 57.4 79 43.0


User provided reference genes

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