Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009640 Vanilla planifolia HOM05D000104 ORTHO05D022031 3.6e-129 464.9 234 100.0
Nn4g26250 Nelumbo nucifera HOM05D000104 ORTHO05D006391 7.6e-63 244.6 250 60.0
Nn1g02228 Nelumbo nucifera HOM05D000104 ORTHO05D006391 3.2e-61 239.2 247 57.5
VMungo0720G1811 Vigna mungo HOM05D000104 ORTHO05D006391 7.1e-61 238.0 248 60.1
CANSAT78G1321 Cannabis sativa HOM05D000104 ORTHO05D006391 1.0e-59 234.2 254 55.1
Dinv44505 Davidia involucrata HOM05D000104 ORTHO05D006391 1.0e-59 234.2 234 59.4
TAR636G2934 Trochodendron aralioides HOM05D000104 ORTHO05D006391 1.3e-59 233.8 246 56.9
GSVIVG01017921001 Vitis vinifera HOM05D000104 ORTHO05D006391 1.8e-59 233.4 244 55.7
Phvul.007G054000 Phaseolus vulgaris HOM05D000104 ORTHO05D006391 2.3e-59 233.0 252 57.9
arahy.Tifrunner.gnm1.ann1.6R1BCK Arachis hypogaea HOM05D000104 ORTHO05D006391 3.0e-59 232.6 251 57.0
arahy.Tifrunner.gnm1.ann1.CDG6HX Arachis hypogaea HOM05D000104 ORTHO05D006391 3.0e-59 232.6 251 57.0
TWI73G0072 Tripterygium wilfordii HOM05D000104 ORTHO05D006391 3.9e-59 232.3 246 56.9
Glyma.20G143200 Glycine max HOM05D000104 ORTHO05D006391 1.5e-58 230.3 245 59.6
Sed0009592 Sechium edule HOM05D000104 ORTHO05D006391 1.5e-58 230.3 254 56.3
Glyma.10G250500 Glycine max HOM05D000104 ORTHO05D006391 3.3e-58 229.2 251 57.4
Ah.04g154480 Amaranthus hybridus HOM05D000104 ORTHO05D006391 4.3e-58 228.8 248 54.8
CsaV3_6G038290 Cucumis sativus L. HOM05D000104 ORTHO05D006391 5.7e-58 228.4 251 55.8
EL10As3g23347 Beta vulgaris HOM05D000104 ORTHO05D006391 1.3e-57 227.3 265 52.5
Glyma.11G004100 Glycine max HOM05D000104 ORTHO05D006391 1.3e-57 227.3 241 56.8
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 1.6e-57 226.9 229 58.1
MELO3C014493.2 Cucumis melo HOM05D000104 ORTHO05D006391 2.8e-57 226.1 251 54.2
ClCG06G005980 Citrullus lanatus HOM05D000104 ORTHO05D006391 6.3e-57 224.9 253 54.5
arahy.Tifrunner.gnm1.ann1.JYJ007 Arachis hypogaea HOM05D000104 ORTHO05D006391 1.1e-56 224.2 242 57.4
arahy.Tifrunner.gnm1.ann1.I4QQIE Arachis hypogaea HOM05D000104 ORTHO05D006391 1.8e-56 223.4 242 56.6
Lj5g0020197 Lotus japonicus HOM05D000104 ORTHO05D006391 1.8e-56 223.4 249 55.8
Eucgr.B01100 Eucalyptus grandis HOM05D000104 ORTHO05D006391 3.1e-56 222.6 311 46.3
Manes.15G026000 Manihot esculenta HOM05D000104 ORTHO05D006391 3.1e-56 222.6 257 54.9
QL06p003521 Quercus lobata HOM05D000104 ORTHO05D006391 4.1e-56 222.2 260 51.9
Actinidia23492 Actinidia chinensis HOM05D000104 ORTHO05D006391 9.0e-56 221.1 233 57.1
Atru.chr4.2520 Acer truncatum HOM05D000104 ORTHO05D006391 1.2e-55 220.7 249 53.4
Rhsim04G0204200 Rhododendron simsii HOM05D000104 ORTHO05D006391 1.2e-55 220.7 236 55.9
Psat4g211240 Pisum sativum HOM05D000104 ORTHO05D006391 1.5e-55 220.3 248 54.8
CAN.G69.9 Capsicum annuum HOM05D000104 ORTHO05D006391 2.0e-55 219.9 233 57.1
Manes.03G181600 Manihot esculenta HOM05D000104 ORTHO05D006391 2.6e-55 219.5 255 53.7
CiPaw.02G094700 Carya illinoinensis HOM05D000104 ORTHO05D006391 3.4e-55 219.2 247 55.1
Ca_10932_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006391 4.5e-55 218.8 252 55.6
CiPaw.01G162800 Carya illinoinensis HOM05D000104 ORTHO05D006391 5.9e-55 218.4 256 52.7
Dinv38416 Davidia involucrata HOM05D000104 ORTHO05D006391 5.9e-55 218.4 233 54.9
Hund12165 Selenicereus undatus HOM05D000104 ORTHO05D006391 5.9e-55 218.4 232 53.9
ATR0626G379 Amborella trichopoda HOM05D000104 ORTHO05D006391 7.6e-55 218.0 248 52.4
Nitab4.5_0000144g0090 Nicotiana tabacum HOM05D000104 ORTHO05D006391 7.6e-55 218.0 231 55.4
Lalb_Chr02g0144671 Lupinus albus HOM05D000104 ORTHO05D006391 1.0e-54 217.6 248 53.6
TPR.G37980 Trifolium pratense HOM05D000104 ORTHO05D006391 1.0e-54 217.6 247 53.8
Nitab4.5_0000180g0040 Nicotiana tabacum HOM05D000104 ORTHO05D006391 1.3e-54 217.2 236 55.1
Psat6g209840 Pisum sativum HOM05D000104 ORTHO05D006391 1.3e-54 217.2 251 54.2
Ca_24384_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006391 1.7e-54 216.9 253 53.0
Lj3A741T68 Lonicera japonica HOM05D000104 ORTHO05D006391 2.2e-54 216.5 224 55.4
Solyc01g079690.4 Solanum lycopersicum HOM05D000104 ORTHO05D006391 2.2e-54 216.5 233 56.7
Sopen01g031470 Solanum pennellii HOM05D000104 ORTHO05D006391 2.2e-54 216.5 233 56.7
Lj6C597G4 Lonicera japonica HOM05D000104 ORTHO05D006391 2.9e-54 216.1 232 56.5
THA.LOC104818783 Tarenaya hassleriana HOM05D000104 ORTHO05D006391 3.8e-54 215.7 256 53.1
Oeu042797.1 Olea europaea HOM05D000104 ORTHO05D006391 1.9e-53 213.4 235 54.9
Sabra10G0052000 Salix brachista HOM05D000104 ORTHO05D006391 1.9e-53 213.4 256 50.8
Actinidia40166 Actinidia chinensis HOM05D000104 ORTHO05D006391 2.5e-53 213.0 254 52.0
Sabra08G0114000 Salix brachista HOM05D000104 ORTHO05D006391 3.2e-53 212.6 258 50.8
CDE04G0057 Ceratophyllum demersum HOM05D000104 ORTHO05D006391 5.5e-53 211.8 248 53.2
Oeu034364.1 Olea europaea HOM05D000104 ORTHO05D006391 5.5e-53 211.8 239 54.8
AT3G06010 Arabidopsis thaliana HOM05D000104 ORTHO05D006391 7.2e-53 211.5 246 50.4
Potri.008G149900 Populus trichocarpa HOM05D000104 ORTHO05D006391 9.3e-53 211.1 258 50.4
Medtr1g105050 Medicago truncatula HOM05D000104 ORTHO05D006391 1.2e-52 210.7 252 54.0
PSO170G0309 Papaver somniferum HOM05D000104 ORTHO05D006391 1.2e-52 210.7 236 54.7
Prupe.1G154600 Prunus persica HOM05D000104 ORTHO05D006391 1.2e-52 210.7 249 53.8
Lj1g0024868 Lotus japonicus HOM05D000104 ORTHO05D006391 1.6e-52 210.3 244 54.1
Cfa015609 Carpinus fangiana HOM05D000104 ORTHO05D006391 2.1e-52 209.9 250 54.8
Medtr5g005840 Medicago truncatula HOM05D000104 ORTHO05D006391 2.1e-52 209.9 251 53.4
PSO302G0005 Papaver somniferum HOM05D000104 ORTHO05D006391 2.7e-52 209.5 236 54.2
MD13G1186900 Malus domestica HOM05D000104 ORTHO05D006391 3.6e-52 209.1 250 51.6
MSTRG.10001 Avicennia marina HOM05D000104 ORTHO05D006391 4.6e-52 208.8 240 52.5
Cpa.g.sc1278.1 Carica papaya HOM05D000104 ORTHO05D006391 7.9e-52 208.0 252 51.6
DCAR_002397 Daucus carota HOM05D000104 ORTHO05D006391 1.8e-51 206.8 197 57.9
Thhalv10019947m.g Eutrema salsugineum HOM05D000104 ORTHO05D006391 1.8e-51 206.8 247 51.0
Peaxi162Scf00437g00634 Petunia axillaris HOM05D000104 ORTHO05D006391 1.8e-51 206.8 236 55.1
CARHR080510 Cardamine hirsuta HOM05D000104 ORTHO05D006391 2.3e-51 206.5 244 51.2
AL3G16830 Arabidopsis lyrata HOM05D000104 ORTHO05D006391 3.0e-51 206.1 250 50.4
Lsat_1_v5_gn_7_66780 Lactuca sativa HOM05D000104 ORTHO05D006391 3.0e-51 206.1 216 53.2
DCAR_027167 Daucus carota HOM05D000104 ORTHO05D006391 3.9e-51 205.7 243 51.0
Sp3g04950 Schrenkiella parvula HOM05D000104 ORTHO05D006391 3.9e-51 205.7 244 51.6
Aqoxy1G03114 Aquilegia oxysepala HOM05D000104 ORTHO05D006391 5.1e-51 205.3 248 54.0
BraA01t04455Z Brassica rapa HOM05D000104 ORTHO05D006391 8.7e-51 204.5 244 50.8
Carub.0003s0543 Capsella rubella HOM05D000104 ORTHO05D006391 1.1e-50 204.1 254 48.8
AUR62038161 Chenopodium quinoa HOM05D000104 ORTHO05D006391 1.9e-50 203.4 163 60.7
HanXRQChr09g0247251 Helianthus annuus HOM05D000104 ORTHO05D006391 3.3e-50 202.6 219 55.7
PGR142G0455 Punica granatum HOM05D000104 ORTHO05D006391 3.3e-50 202.6 302 44.4
vmacro15323 Vaccinium macrocarpon HOM05D000104 ORTHO05D006391 3.3e-50 202.6 237 50.2
Duzib212G0338 Durio zibethinus HOM05D000104 ORTHO05D006391 4.3e-50 202.2 247 51.0
AUR62038085 Chenopodium quinoa HOM05D000104 ORTHO05D006391 7.4e-50 201.4 163 60.7
MD16G1187800 Malus domestica HOM05D000104 ORTHO05D006391 2.8e-49 199.5 253 51.4
Potri.010G091200 Populus trichocarpa HOM05D000104 ORTHO05D006391 2.8e-49 199.5 257 47.1
Duzib151G0379 Durio zibethinus HOM05D000104 ORTHO05D006391 4.8e-49 198.7 253 52.6
Thecc.04G226600 Theobroma cacao HOM05D000104 ORTHO05D006391 8.2e-49 198.0 259 50.2
PSO566G0247 Papaver somniferum HOM05D000104 ORTHO05D006391 1.4e-48 197.2 235 54.9
Rhsim02G0022300 Rhododendron simsii HOM05D000104 ORTHO05D006391 1.8e-48 196.8 238 49.6
Gohir.A10G118000 Gossypium hirsutum HOM05D000104 ORTHO05D006391 2.4e-48 196.4 247 50.2
Pp3c27_3890 Physcomitrium patens HOM05D000104 ORTHO05D006391 3.1e-48 196.1 181 59.7
COL.COLO4_06204 Corchorus olitorius HOM05D000104 ORTHO05D006391 1.2e-47 194.1 250 51.2
Cc03_g03400 Coffea canephora HOM05D000104 ORTHO05D006391 1.5e-47 193.7 234 50.9
Gohir.D10G148800 Gossypium hirsutum HOM05D000104 ORTHO05D006391 1.5e-47 193.7 247 50.2
Gorai.011G166100 Gossypium raimondii HOM05D000104 ORTHO05D006391 1.5e-47 193.7 247 50.2
Aa31LG5G16490 Aethionema arabicum HOM05D000104 ORTHO05D006391 2.0e-47 193.4 153 64.7
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 2.0e-47 193.4 228 51.3
Carub.0006s1764 Capsella rubella HOM05D000104 ORTHO05D006391 4.5e-47 192.2 151 64.2
Migut.G00313 Erythranthe guttata HOM05D000104 ORTHO05D006391 4.5e-47 192.2 249 51.4
MSTRG.4011 Avicennia marina HOM05D000104 ORTHO05D006391 5.9e-47 191.8 232 53.4
BcaC09g47872 Brassica carinata HOM05D000104 ORTHO05D006391 7.7e-47 191.4 244 47.1
BolC1t05642H Brassica oleracea HOM05D000104 ORTHO05D006391 7.7e-47 191.4 244 47.1
CARHR193660 Cardamine hirsuta HOM05D000104 ORTHO05D006391 1.7e-46 190.3 137 70.1
Sp6g25110 Schrenkiella parvula HOM05D000104 ORTHO05D006391 1.7e-46 190.3 138 68.8
Aqoxy2G03333 Aquilegia oxysepala HOM05D000104 ORTHO05D006391 2.2e-46 189.9 236 49.6
RcHm_v2.0_Chr4g0417121 Rosa chinensis HOM05D000104 ORTHO05D006391 5.0e-46 188.7 153 68.6
SEGI_40932 Sequoiadendron giganteum HOM05D000104 ORTHO05D006391 1.1e-45 187.6 269 44.6
FAN17G1856 Fragaria x ananassa HOM05D000104 ORTHO05D006391 1.9e-45 186.8 238 50.0
FvH4_4g14970 Fragaria vesca HOM05D000104 ORTHO05D006391 2.5e-45 186.4 192 57.3
AT5G19310 Arabidopsis thaliana HOM05D000104 ORTHO05D006391 7.2e-45 184.9 225 48.9
HanXRQChr09g0247211 Helianthus annuus HOM05D000104 ORTHO05D006391 1.2e-44 184.1 138 68.8
AL6G30790 Arabidopsis lyrata HOM05D000104 ORTHO05D006391 1.6e-44 183.7 135 69.6
SGA_v2.0_scaffold39G15292 Striga asiatica HOM05D000104 ORTHO05D006391 2.7e-44 183.0 155 65.8
CBR_g29561 Chara braunii HOM05D000104 ORTHO05D006391 4.6e-44 182.2 202 54.5
Os05g0144300 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006391 4.6e-44 182.2 245 50.6
Haze_00933 Corylus avellana HOM05D000104 ORTHO05D006391 1.8e-43 180.3 315 43.2
Mapoly0030s0101 Marchantia polymorpha HOM05D000104 ORTHO05D006391 2.3e-43 179.9 154 61.7
SHI00411 Sapria himalayana HOM05D000104 ORTHO05D006391 2.3e-43 179.9 215 50.2
Thhalv10015665m.g Eutrema salsugineum HOM05D000104 ORTHO05D006391 2.0e-42 176.8 140 63.6
AagrBONN_evm.TU.Sc2ySwM_117.613 Anthoceros agrestis HOM05D000104 ORTHO05D006391 3.3e-42 176.0 151 61.6
FAN07G1560 Fragaria x ananassa HOM05D000104 ORTHO05D006391 3.3e-42 176.0 258 46.9
Zm00001eb108690 Zea mays HOM05D000104 ORTHO05D006391 4.4e-42 175.6 246 49.2
FAN12G2172 Fragaria x ananassa HOM05D006587 ORTHO05D006391 9.7e-42 174.5 209 52.2
FAN22G2243 Fragaria x ananassa HOM05D000104 ORTHO05D006391 1.7e-41 173.7 258 46.1
SMO141G0237 Selaginella moellendorffii HOM05D000104 ORTHO05D006391 1.7e-41 173.7 139 64.7
unitig_749.g14068 Utricularia gibba HOM05D000104 ORTHO05D006391 1.1e-40 171.0 142 65.5
SalBow2G2646 Salvia bowleyana HOM05D000104 ORTHO05D006391 4.8e-25 119.0 112 61.6
TPR.G5483 Trifolium pratense HOM05D000104 ORTHO05D006391 2.1e-20 103.6 265 37.7
PRCOL_00001825 Prasinoderma coloniale HOM05D000104 ORTHO05D006391 1.0e-19 101.3 173 41.0
C05p61250 Brassica napus HOM05D000104 ORTHO05D022031 8.8e-19 98.2 82 59.8
Pp3c20_4650 Physcomitrium patens HOM05D000104 ORTHO05D022031 8.8e-19 98.2 92 59.8
RcHm_v2.0_Chr4g0417031 Rosa chinensis HOM05D000104 ORTHO05D022031 6.3e-17 92.0 209 36.8
VMungo1383G3534 Vigna mungo HOM05D000104 ORTHO05D031591 1.8e-16 90.5 91 59.3
MCO11G011 Micromonas commoda HOM05D000104 ORTHO05D006391 3.2e-13 79.7 95 46.3
Pp3c5_4210 Physcomitrium patens HOM05D000104 ORTHO05D022031 2.1e-12 77.0 45 84.4
Cfa023384 Carpinus fangiana HOM05D000104 ORTHO05D006391 1.0e-11 74.7 161 35.4
Medtr7g078090 Medicago truncatula HOM05D000104 ORTHO05D004024 1.7e-06 57.4 85 41.2


User provided reference genes

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