Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000361 Vanilla planifolia HOM05D002810 ORTHO05D012408 4.8e-21 103.6 53 100.0
HPP92_000327 Vanilla planifolia HOM05D002810 ORTHO05D012408 4.3e-14 80.5 42 95.2
Nn3g16268 Nelumbo nucifera HOM05D002810 ORTHO05D003983 1.6e-13 78.6 45 84.4
CANSAT11G0290 Cannabis sativa HOM05D002810 ORTHO05D003983 2.1e-13 78.2 45 82.2
Ca_14018_v3 Cicer arietinum L. HOM05D002810 ORTHO05D003983 2.1e-13 78.2 45 82.2
SalBow1G2675 Salvia bowleyana HOM05D002810 ORTHO05D003983 2.1e-13 78.2 45 82.2
Hund10032 Selenicereus undatus HOM05D002810 ORTHO05D003983 2.1e-13 78.2 45 82.2
Medtr3g006730 Medicago truncatula HOM05D002810 ORTHO05D003983 2.8e-13 77.8 45 80.0
Medtr7g406850 Medicago truncatula HOM05D002810 ORTHO05D003983 2.8e-13 77.8 45 80.0
PSO591G0171 Papaver somniferum HOM05D002810 ORTHO05D003983 2.8e-13 77.8 45 82.2
PSO832G1639 Papaver somniferum HOM05D002810 ORTHO05D003983 2.8e-13 77.8 45 82.2
Psat3g206520 Pisum sativum HOM05D002810 ORTHO05D003983 2.8e-13 77.8 45 80.0
TPR.G9721 Trifolium pratense HOM05D002810 ORTHO05D003983 2.8e-13 77.8 45 80.0
unitig_736.g22830 Utricularia gibba HOM05D002810 ORTHO05D003983 3.7e-13 77.4 45 82.2
Actinidia36844 Actinidia chinensis HOM05D002810 ORTHO05D003983 4.8e-13 77.0 45 82.2
CAN.G843.8 Capsicum annuum HOM05D002810 ORTHO05D003983 4.8e-13 77.0 45 82.2
Cfa009452 Carpinus fangiana HOM05D002810 ORTHO05D003983 4.8e-13 77.0 45 82.2
Ciclev10004524m.g Citrus clementina HOM05D002810 ORTHO05D003983 4.8e-13 77.0 45 82.2
Dinv05540 Davidia involucrata HOM05D002810 ORTHO05D003983 4.8e-13 77.0 45 82.2
FvH4_4g22610 Fragaria vesca HOM05D002810 ORTHO05D003983 4.8e-13 77.0 45 82.2
FAN17G0004 Fragaria x ananassa HOM05D002810 ORTHO05D003983 4.8e-13 77.0 45 82.2
Hma1.2p1_0787F.1_g217990 Hydrangea macrophylla HOM05D002810 ORTHO05D003983 4.8e-13 77.0 45 82.2
Manes.08G101000 Manihot esculenta HOM05D002810 ORTHO05D003983 4.8e-13 77.0 45 82.2
Manes.09G188200 Manihot esculenta HOM05D002810 ORTHO05D003983 4.8e-13 77.0 45 82.2
Nn4g22128 Nelumbo nucifera HOM05D002810 ORTHO05D003983 4.8e-13 77.0 45 82.2
Nitab4.5_0000976g0080 Nicotiana tabacum HOM05D002810 ORTHO05D003983 4.8e-13 77.0 45 82.2
Nitab4.5_0011600g0010 Nicotiana tabacum HOM05D002810 ORTHO05D003983 4.8e-13 77.0 45 82.2
Potri.001G067800 Populus trichocarpa HOM05D002810 ORTHO05D003983 4.8e-13 77.0 45 82.2
QL08p055697 Quercus lobata HOM05D002810 ORTHO05D003983 4.8e-13 77.0 45 82.2
Sabra01G0047100 Salix brachista HOM05D002810 ORTHO05D003983 4.8e-13 77.0 45 82.2
TAR371G0759 Trochodendron aralioides HOM05D002810 ORTHO05D003983 4.8e-13 77.0 45 82.2
unitig_899.g14822 Utricularia gibba HOM05D002810 ORTHO05D003983 4.8e-13 77.0 45 80.0
Cc04_g05830 Coffea canephora HOM05D002810 ORTHO05D003983 6.2e-13 76.6 45 80.0
Hund02512 Selenicereus undatus HOM05D002810 ORTHO05D003983 6.2e-13 76.6 45 80.0
Sc22g0003310 Simmondsia chinensis HOM05D002810 ORTHO05D003983 6.2e-13 76.6 45 80.0
Carub.0001s2811 Capsella rubella HOM05D002810 ORTHO05D003983 8.1e-13 76.3 45 82.2
Carub.0003s2844 Capsella rubella HOM05D002810 ORTHO05D003983 8.1e-13 76.3 45 82.2
CAN.G849.7 Capsicum annuum HOM05D002810 ORTHO05D003983 8.1e-13 76.3 45 77.8
CARHR029560 Cardamine hirsuta HOM05D002810 ORTHO05D003983 8.1e-13 76.3 45 82.2
FAN12G2350 Fragaria x ananassa HOM05D002810 ORTHO05D003983 8.1e-13 76.3 45 82.2
Lalb_Chr17g0335731 Lupinus albus HOM05D002810 ORTHO05D003983 8.1e-13 76.3 45 77.8
MBI10_g44968_MAGBIO Magnolia biondii HOM05D002810 ORTHO05D003983 8.1e-13 76.3 45 82.2
MD13G1131000 Malus domestica HOM05D002810 ORTHO05D003983 8.1e-13 76.3 45 80.0
MD16G1141200 Malus domestica HOM05D002810 ORTHO05D003983 8.1e-13 76.3 45 80.0
Nitab4.5_0000691g0260 Nicotiana tabacum HOM05D002810 ORTHO05D003983 8.1e-13 76.3 45 77.8
Nitab4.5_0007955g0020 Nicotiana tabacum HOM05D002810 ORTHO05D003983 8.1e-13 76.3 45 77.8
Peaxi162Scf00842g00331 Petunia axillaris HOM05D002810 ORTHO05D003983 8.1e-13 76.3 45 77.8
Sp1g25770 Schrenkiella parvula HOM05D002810 ORTHO05D003983 8.1e-13 76.3 45 82.2
Sopen11g011720 Solanum pennellii HOM05D002810 ORTHO05D003983 8.1e-13 76.3 45 77.8
PGSC0003DMG400015909 Solanum tuberosum HOM05D002810 ORTHO05D003983 8.1e-13 76.3 45 77.8
THA.LOC104807285 Tarenaya hassleriana HOM05D002810 ORTHO05D003983 8.1e-13 76.3 45 80.0
Aa31LG1G22590 Aethionema arabicum HOM05D002810 ORTHO05D003983 1.1e-12 75.9 45 82.2
AT1G29880 Arabidopsis thaliana HOM05D002810 ORTHO05D003983 1.1e-12 75.9 45 80.0
BcaB03g13853 Brassica carinata HOM05D002810 ORTHO05D003983 1.1e-12 75.9 45 80.0
BcaB07g32572 Brassica carinata HOM05D002810 ORTHO05D003983 1.1e-12 75.9 45 80.0
BcaC05g26999 Brassica carinata HOM05D002810 ORTHO05D003983 1.1e-12 75.9 45 80.0
BcaC06g35470 Brassica carinata HOM05D002810 ORTHO05D003983 1.1e-12 75.9 45 80.0
A07p10180 Brassica napus HOM05D002810 ORTHO05D003983 1.1e-12 75.9 45 80.0
A09p36620 Brassica napus HOM05D002810 ORTHO05D003983 1.1e-12 75.9 45 80.0
C05p28620 Brassica napus HOM05D002810 ORTHO05D003983 1.1e-12 75.9 45 80.0
C07p15700 Brassica napus HOM05D002810 ORTHO05D003983 1.1e-12 75.9 45 80.0
BolC5t31584H Brassica oleracea HOM05D002810 ORTHO05D003983 1.1e-12 75.9 45 80.0
BolC7t42060H Brassica oleracea HOM05D002810 ORTHO05D003983 1.1e-12 75.9 45 80.0
BraA07t28811Z Brassica rapa HOM05D002810 ORTHO05D003983 1.1e-12 75.9 45 80.0
BraA09t39182Z Brassica rapa HOM05D002810 ORTHO05D003983 1.1e-12 75.9 45 80.0
DCAR_025646 Daucus carota HOM05D002810 ORTHO05D003983 1.1e-12 75.9 45 82.2
Thhalv10006931m.g Eutrema salsugineum HOM05D002810 ORTHO05D003983 1.1e-12 75.9 45 80.0
Prupe.1G214600 Prunus persica HOM05D002810 ORTHO05D003983 1.1e-12 75.9 45 80.0
SGA_v2.0_scaffold168G38551 Striga asiatica HOM05D002810 ORTHO05D003983 1.1e-12 75.9 45 80.0
Atru.chr12.1423 Acer truncatum HOM05D002810 ORTHO05D003983 1.4e-12 75.5 45 80.0
Cfa017019 Carpinus fangiana HOM05D002810 ORTHO05D012408 1.4e-12 75.5 45 80.0
Cfa018257 Carpinus fangiana HOM05D002810 ORTHO05D003983 1.4e-12 75.5 45 80.0
Haze_21183 Corylus avellana HOM05D002810 ORTHO05D003983 1.4e-12 75.5 45 80.0
Dinv23230 Davidia involucrata HOM05D002810 ORTHO05D003983 1.4e-12 75.5 45 82.2
ECA233G3858 Erigeron canadensis HOM05D002810 ORTHO05D003983 1.4e-12 75.5 42 83.3
MD13G1145800 Malus domestica HOM05D002810 ORTHO05D003983 1.4e-12 75.5 45 77.8
Rhsim12G0181000 Rhododendron simsii HOM05D002810 ORTHO05D003983 1.4e-12 75.5 45 80.0
Solyc11g039830.2 Solanum lycopersicum HOM05D002810 ORTHO05D003983 1.4e-12 75.5 45 77.8
TWI75G1068 Tripterygium wilfordii HOM05D002810 ORTHO05D003983 1.4e-12 75.5 45 82.2
Ah.11g046940 Amaranthus hybridus HOM05D002810 ORTHO05D003983 1.8e-12 75.1 45 80.0
CSS0035484 Camellia sinensis var. sinensis HOM05D002810 ORTHO05D003983 1.8e-12 75.1 45 80.0
CSS0036034 Camellia sinensis var. sinensis HOM05D002810 ORTHO05D003983 1.8e-12 75.1 45 80.0
ClCG01G020940 Citrullus lanatus HOM05D002810 ORTHO05D003983 1.8e-12 75.1 45 80.0
ClCG11G011160 Citrullus lanatus HOM05D002810 ORTHO05D003983 1.8e-12 75.1 45 80.0
MELO3C003905.2 Cucumis melo HOM05D002810 ORTHO05D003983 1.8e-12 75.1 45 80.0
CsaV3_2G009270 Cucumis sativus L. HOM05D002810 ORTHO05D003983 1.8e-12 75.1 45 80.0
Migut.I00670 Erythranthe guttata HOM05D002810 ORTHO05D003983 1.8e-12 75.1 45 80.0
FAN07G1588 Fragaria x ananassa HOM05D002810 ORTHO05D003983 1.8e-12 75.1 45 80.0
HanXRQChr17g0553691 Helianthus annuus HOM05D002810 ORTHO05D003983 1.8e-12 75.1 42 83.3
Lsat_1_v5_gn_8_125800 Lactuca sativa HOM05D002810 ORTHO05D012408 1.8e-12 75.1 42 83.3
Lsat_1_v5_gn_8_125820 Lactuca sativa HOM05D002810 ORTHO05D003983 1.8e-12 75.1 42 83.3
Lalb_Chr04g0257341 Lupinus albus HOM05D002810 ORTHO05D012408 1.8e-12 75.1 40 85.0
RcHm_v2.0_Chr1g0361881 Rosa chinensis HOM05D002810 ORTHO05D003983 1.8e-12 75.1 45 80.0
RcHm_v2.0_Chr4g0428851 Rosa chinensis HOM05D002810 ORTHO05D003983 1.8e-12 75.1 45 80.0
Sed0005865 Sechium edule HOM05D002810 ORTHO05D003983 1.8e-12 75.1 45 80.0
Sed0007290 Sechium edule HOM05D002810 ORTHO05D003983 1.8e-12 75.1 45 80.0
Solyc03g118170.3 Solanum lycopersicum HOM05D002810 ORTHO05D003983 1.8e-12 75.1 45 80.0
Sopen03g037090 Solanum pennellii HOM05D002810 ORTHO05D003983 1.8e-12 75.1 45 80.0
PGSC0003DMG400014239 Solanum tuberosum HOM05D002810 ORTHO05D003983 1.8e-12 75.1 45 80.0
TWI18G0448 Tripterygium wilfordii HOM05D002810 ORTHO05D003983 1.8e-12 75.1 45 80.0
Cpa.g.sc13.180 Carica papaya HOM05D002810 ORTHO05D012408 2.4e-12 74.7 44 81.8
Haze_12505 Corylus avellana HOM05D002810 ORTHO05D003983 2.4e-12 74.7 45 80.0
DCAR_013876 Daucus carota HOM05D002810 ORTHO05D003983 2.4e-12 74.7 40 87.5
Glyma.08G363700 Glycine max HOM05D002810 ORTHO05D003983 2.4e-12 74.7 45 77.8
Hma1.2p1_0452F.1_g155970 Hydrangea macrophylla HOM05D002810 ORTHO05D003983 2.4e-12 74.7 45 77.8
Lj1g0018511 Lotus japonicus HOM05D002810 ORTHO05D003983 2.4e-12 74.7 45 80.0
Medtr3g006740 Medicago truncatula HOM05D002810 ORTHO05D003983 2.4e-12 74.7 42 83.3
Phvul.008G004200 Phaseolus vulgaris HOM05D002810 ORTHO05D003983 2.4e-12 74.7 45 77.8
Potri.003G162300 Populus trichocarpa HOM05D002810 ORTHO05D003983 2.4e-12 74.7 45 80.0
Sabra03G0118000 Salix brachista HOM05D002810 ORTHO05D003983 2.4e-12 74.7 45 80.0
SHI04113 Sapria himalayana HOM05D002810 ORTHO05D003983 2.4e-12 74.7 45 80.0
GSVIVG01008654001 Vitis vinifera HOM05D002810 ORTHO05D003983 2.4e-12 74.7 45 80.0
ATR0706G267 Amborella trichopoda HOM05D002810 ORTHO05D003983 3.1e-12 74.3 45 75.6
ATR0807G207 Amborella trichopoda HOM05D002810 ORTHO05D003983 3.1e-12 74.3 45 75.6
Aqoxy1G00627 Aquilegia oxysepala HOM05D002810 ORTHO05D003983 3.1e-12 74.3 45 80.0
arahy.Tifrunner.gnm1.ann1.Z3WE7L Arachis hypogaea HOM05D002810 ORTHO05D003983 3.1e-12 74.3 45 77.8
Cc11_g14990 Coffea canephora HOM05D002810 ORTHO05D003983 3.1e-12 74.3 45 77.8
COL.COLO4_37263 Corchorus olitorius HOM05D002810 ORTHO05D003983 3.1e-12 74.3 45 80.0
Duzib068G0223 Durio zibethinus HOM05D002810 ORTHO05D003983 3.1e-12 74.3 45 80.0
Lj9A487T49 Lonicera japonica HOM05D002810 ORTHO05D003983 3.1e-12 74.3 45 80.0
Oeu043187.1 Olea europaea HOM05D002810 ORTHO05D003983 3.1e-12 74.3 40 85.0
Oeu043188.1 Olea europaea HOM05D002810 ORTHO05D012408 3.1e-12 74.3 40 85.0
Oeu054157.1 Olea europaea HOM05D002810 ORTHO05D003983 3.1e-12 74.3 45 77.8
Peaxi162Scf00314g00629 Petunia axillaris HOM05D002810 ORTHO05D003983 3.1e-12 74.3 45 77.8
Rhsim08G0198100 Rhododendron simsii HOM05D002810 ORTHO05D003983 3.1e-12 74.3 45 77.8
vmacro19189 Vaccinium macrocarpon HOM05D002810 ORTHO05D003983 3.1e-12 74.3 45 77.8
Actinidia18296 Actinidia chinensis HOM05D002810 ORTHO05D003983 4.0e-12 73.9 45 77.8
Actinidia25515 Actinidia chinensis HOM05D002810 ORTHO05D003983 4.0e-12 73.9 45 77.8
AL1G43730 Arabidopsis lyrata HOM05D002810 ORTHO05D003983 4.0e-12 73.9 45 77.8
CSS0026992 Camellia sinensis var. sinensis HOM05D002810 ORTHO05D003983 4.0e-12 73.9 45 77.8
SGA_v2.0_scaffold37G14676 Striga asiatica HOM05D002810 ORTHO05D003983 4.0e-12 73.9 45 75.6
vmacro16759 Vaccinium macrocarpon HOM05D002810 ORTHO05D003983 4.0e-12 73.9 45 77.8
AL5G22970 Arabidopsis lyrata HOM05D002810 ORTHO05D003983 5.3e-12 73.6 45 77.8
COL.COLO4_24379 Corchorus olitorius HOM05D002810 ORTHO05D003983 5.3e-12 73.6 45 82.2
Migut.D01180 Erythranthe guttata HOM05D002810 ORTHO05D003983 5.3e-12 73.6 45 75.6
SEGI_39194 Sequoiadendron giganteum HOM05D002810 ORTHO05D003983 5.3e-12 73.6 45 77.8
TPR.G25541 Trifolium pratense HOM05D002810 ORTHO05D012408 5.3e-12 73.6 45 75.6
Ah.02g114570 Amaranthus hybridus HOM05D002810 ORTHO05D003983 6.9e-12 73.2 45 75.6
Duzib248G0947 Durio zibethinus HOM05D002810 ORTHO05D003983 6.9e-12 73.2 45 80.0
Gohir.A04G101600 Gossypium hirsutum HOM05D002810 ORTHO05D003983 6.9e-12 73.2 45 80.0
Gohir.D04G140800 Gossypium hirsutum HOM05D002810 ORTHO05D003983 6.9e-12 73.2 45 80.0
Gorai.012G125800 Gossypium raimondii HOM05D002810 ORTHO05D003983 6.9e-12 73.2 45 80.0
Thecc.02G191900 Theobroma cacao HOM05D002810 ORTHO05D003983 6.9e-12 73.2 45 80.0
Thecc.03G141100 Theobroma cacao HOM05D002810 ORTHO05D003983 6.9e-12 73.2 45 77.8
VMungo1383G1395 Vigna mungo HOM05D002810 ORTHO05D003983 6.9e-12 73.2 45 75.6
GSVIVG01001092001 Vitis vinifera HOM05D002810 ORTHO05D003983 6.9e-12 73.2 45 75.6
MSTRG.9374 Avicennia marina HOM05D002810 ORTHO05D003983 1.2e-11 72.4 45 75.6
EL10Ac5g11280 Beta vulgaris HOM05D002810 ORTHO05D003983 1.2e-11 72.4 45 75.6
FvH4_4g22450 Fragaria vesca HOM05D002810 ORTHO05D012408 1.2e-11 72.4 40 85.0
AUR62032217 Chenopodium quinoa HOM05D002810 ORTHO05D003983 1.5e-11 72.0 45 75.6
AUR62043309 Chenopodium quinoa HOM05D002810 ORTHO05D003983 1.5e-11 72.0 45 75.6
AUR62044211 Chenopodium quinoa HOM05D002810 ORTHO05D003983 1.5e-11 72.0 45 75.6
SGA_v2.0_scaffold5G02803 Striga asiatica HOM05D002810 ORTHO05D003983 1.5e-11 72.0 45 75.6
ECA233G1476 Erigeron canadensis HOM05D002810 ORTHO05D003983 2.0e-11 71.6 40 82.5
COL.COLO4_19490 Corchorus olitorius HOM05D002810 ORTHO05D003983 2.6e-11 71.2 45 80.0
TAR374G0126 Trochodendron aralioides HOM05D002810 ORTHO05D012408 4.5e-11 70.5 39 84.6
Eucgr.G01975 Eucalyptus grandis HOM05D002810 ORTHO05D003983 5.8e-11 70.1 45 73.3
Os08g0538000 Oryza sativa ssp. japonica HOM05D002810 ORTHO05D003983 5.8e-11 70.1 38 86.8
Zm00001eb037050 Zea mays HOM05D002810 ORTHO05D003983 7.6e-11 69.7 38 86.8
PSO675G4694 Papaver somniferum HOM05D002810 ORTHO05D003983 9.9e-11 69.3 40 80.0
Zm00001eb198180 Zea mays HOM05D002810 ORTHO05D003983 9.9e-11 69.3 38 84.2
Os04g0398300 Oryza sativa ssp. japonica HOM05D002810 ORTHO05D012408 1.3e-10 68.9 40 77.5
Carub.0007s0119 Capsella rubella HOM05D002810 ORTHO05D003983 1.7e-10 68.6 45 68.9
Zm00001eb084770 Zea mays HOM05D002810 ORTHO05D003983 2.2e-10 68.2 40 77.5
SMO196G0036 Selaginella moellendorffii HOM05D002810 ORTHO05D003983 4.9e-10 67.0 47 74.5
AL7G10960 Arabidopsis lyrata HOM05D002810 ORTHO05D003983 6.4e-10 66.6 41 73.2
Pp3c6_4010 Physcomitrium patens HOM05D002810 ORTHO05D003983 6.4e-10 66.6 45 68.9
PGR119G2030 Punica granatum HOM05D002810 ORTHO05D003983 6.4e-10 66.6 40 75.0
SMO356G0375 Selaginella moellendorffii HOM05D002810 ORTHO05D003983 6.4e-10 66.6 45 71.1
AL1G43710 Arabidopsis lyrata HOM05D002810 ORTHO05D003983 8.4e-10 66.2 40 75.0
Aqoxy5G03106 Aquilegia oxysepala HOM05D002810 ORTHO05D012408 2.4e-09 64.7 44 68.2
arahy.Tifrunner.gnm1.ann1.Y7TDZM Arachis hypogaea HOM05D002810 ORTHO05D003983 2.4e-09 64.7 39 79.5
Mapoly0003s0044 Marchantia polymorpha HOM05D002810 ORTHO05D003983 3.2e-09 64.3 49 67.3
BcaB03g12184 Brassica carinata HOM05D002810 ORTHO05D012408 9.3e-09 62.8 37 75.7
CBR_g24092 Chara braunii HOM05D002810 ORTHO05D003983 4.6e-08 60.5 49 63.3
Duzib132G0251 Durio zibethinus HOM05D002810 ORTHO05D186195 7.9e-08 59.7 39 74.4
Zm00001eb126210 Zea mays HOM05D002810 ORTHO05D012408 5.1e-07 57.0 38 73.7
Cre05.g233800 Chlamydomonas reinhardtii HOM05D002810 ORTHO05D003983 6.7e-07 56.6 45 62.2
Ciclev10005363m.g Citrus clementina HOM05D002810 ORTHO05D003983 1.5e-06 55.5 35 77.1
Haze_26207 Corylus avellana HOM05D002810 ORTHO05D003983 3.3e-06 54.3 42 66.7
PRCOL_00003040 Prasinoderma coloniale HOM05D002810 ORTHO05D003983 5.6e-06 53.5 42 64.3
CBR_g49404 Chara braunii HOM05D002810 ORTHO05D003983 7.4e-06 53.1 47 61.7


User provided reference genes

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