Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.007G005100 Gossypium raimondii HOM05D000688 ORTHO05D016546 3.2e-60 235.0 125 100.0
Gohir.A11G004801 Gossypium hirsutum HOM05D000688 ORTHO05D003888 6.6e-29 131.0 79 88.6
Gorai.007G005200 Gossypium raimondii HOM05D000688 ORTHO05D003888 4.3e-28 128.3 73 93.2
COL.COLO4_05983 Corchorus olitorius HOM05D000688 ORTHO05D003888 2.4e-23 112.5 73 83.6
Ciclev10000078m.g Citrus clementina HOM05D000688 ORTHO05D003888 3.2e-23 112.1 73 82.2
Thecc.10G140700 Theobroma cacao HOM05D000688 ORTHO05D003888 5.4e-23 111.3 73 82.2
Duzib106G0735 Durio zibethinus HOM05D000688 ORTHO05D003888 7.0e-23 110.9 73 82.2
Gohir.A05G399000 Gossypium hirsutum HOM05D000688 ORTHO05D003888 7.0e-23 110.9 73 82.2
Gohir.D04G016900 Gossypium hirsutum HOM05D000688 ORTHO05D003888 7.0e-23 110.9 73 82.2
Gorai.012G019600 Gossypium raimondii HOM05D000688 ORTHO05D003888 7.0e-23 110.9 73 82.2
Prupe.2G044100 Prunus persica HOM05D000688 ORTHO05D003888 4.6e-22 108.2 73 76.7
Atru.chr12.1245 Acer truncatum HOM05D000688 ORTHO05D003888 1.0e-21 107.1 73 76.7
FvH4_7g03930 Fragaria vesca HOM05D000688 ORTHO05D003888 1.7e-21 106.3 79 72.2
FAN01G1250 Fragaria x ananassa HOM05D000688 ORTHO05D003888 1.7e-21 106.3 79 72.2
FAN03G3082 Fragaria x ananassa HOM05D000688 ORTHO05D003888 1.7e-21 106.3 79 72.2
FAN06G4099 Fragaria x ananassa HOM05D000688 ORTHO05D003888 1.7e-21 106.3 79 72.2
RcHm_v2.0_Chr1g0327591 Rosa chinensis HOM05D000688 ORTHO05D003888 1.7e-21 106.3 79 73.4
Potri.015G003000 Populus trichocarpa HOM05D000688 ORTHO05D003888 3.0e-21 105.5 79 73.4
Manes.04G155900 Manihot esculenta HOM05D000688 ORTHO05D003888 5.0e-21 104.8 73 76.7
Sabra15G0001900 Salix brachista HOM05D000688 ORTHO05D003888 5.0e-21 104.8 85 70.6
Atru.chr4.3095 Acer truncatum HOM05D000688 ORTHO05D003888 1.1e-20 103.6 73 74.0
BcaB07g30474 Brassica carinata HOM05D000688 ORTHO05D003888 1.1e-20 103.6 73 74.0
Cpa.g.sc17.36 Carica papaya HOM05D000688 ORTHO05D016546 1.1e-20 103.6 75 74.7
C02p45870 Brassica napus HOM05D000688 ORTHO05D003888 1.5e-20 103.2 73 74.0
BolC2t10650H Brassica oleracea HOM05D000688 ORTHO05D003888 1.5e-20 103.2 73 74.0
BcaC03g16725 Brassica carinata HOM05D000688 ORTHO05D003888 2.5e-20 102.4 73 72.6
BcaC06g34487 Brassica carinata HOM05D000688 ORTHO05D003888 4.3e-20 101.7 73 72.6
A02p28860 Brassica napus HOM05D000688 ORTHO05D003888 4.3e-20 101.7 73 72.6
A06p46750 Brassica napus HOM05D000688 ORTHO05D003888 4.3e-20 101.7 73 72.6
C07p27930 Brassica napus HOM05D000688 ORTHO05D003888 4.3e-20 101.7 73 72.6
BraA06t27547Z Brassica rapa HOM05D000688 ORTHO05D003888 4.3e-20 101.7 73 72.6
AL8G14060 Arabidopsis lyrata HOM05D000688 ORTHO05D003888 5.6e-20 101.3 73 72.6
MSTRG.20498 Avicennia marina HOM05D000688 ORTHO05D003888 5.6e-20 101.3 72 72.2
Carub.0008s0305 Capsella rubella HOM05D000688 ORTHO05D003888 5.6e-20 101.3 73 72.6
CARHR177390 Cardamine hirsuta HOM05D000688 ORTHO05D003888 5.6e-20 101.3 73 72.6
CARHR110550 Cardamine hirsuta HOM05D000688 ORTHO05D003888 7.3e-20 100.9 73 71.2
THA.LOC104811399 Tarenaya hassleriana HOM05D000688 ORTHO05D003888 7.3e-20 100.9 73 71.2
Cc04_g08890 Coffea canephora HOM05D000688 ORTHO05D003888 9.5e-20 100.5 72 73.6
MD14G1029000 Malus domestica HOM05D000688 ORTHO05D003888 1.2e-19 100.1 73 71.2
PSO478G2833 Papaver somniferum HOM05D000688 ORTHO05D003888 1.2e-19 100.1 73 71.2
AT5G45140 Arabidopsis thaliana HOM05D000688 ORTHO05D003888 1.6e-19 99.8 73 71.2
AUR62013825 Chenopodium quinoa HOM05D000688 ORTHO05D003888 1.6e-19 99.8 73 69.9
Peaxi162Scf01517g00143 Petunia axillaris HOM05D000688 ORTHO05D003888 2.1e-19 99.4 76 69.7
QL05p086844 Quercus lobata HOM05D000688 ORTHO05D003888 2.1e-19 99.4 92 64.1
SGA_v2.0_scaffold375G50252 Striga asiatica HOM05D000688 ORTHO05D003888 2.1e-19 99.4 72 72.2
Haze_02986 Corylus avellana HOM05D000688 ORTHO05D003888 2.8e-19 99.0 79 68.4
Psat4g164800 Pisum sativum HOM05D000688 ORTHO05D003888 2.8e-19 99.0 74 68.9
GSVIVG01036596001 Vitis vinifera HOM05D000688 ORTHO05D003888 2.8e-19 99.0 73 72.6
Thhalv10000748m.g Eutrema salsugineum HOM05D000688 ORTHO05D003888 3.6e-19 98.6 73 71.2
Glyma.07G125300 Glycine max HOM05D000688 ORTHO05D003888 3.6e-19 98.6 73 71.2
Rhsim11G0122400 Rhododendron simsii HOM05D000688 ORTHO05D003888 3.6e-19 98.6 72 73.6
Solyc10g078860.2 Solanum lycopersicum HOM05D000688 ORTHO05D003888 3.6e-19 98.6 73 69.9
Sopen10g029490 Solanum pennellii HOM05D000688 ORTHO05D003888 3.6e-19 98.6 73 69.9
PGSC0003DMG400011444 Solanum tuberosum HOM05D000688 ORTHO05D003888 3.6e-19 98.6 73 69.9
Glyma.01G006500 Glycine max HOM05D000688 ORTHO05D003888 6.2e-19 97.8 73 71.2
vmacro01621 Vaccinium macrocarpon HOM05D000688 ORTHO05D003888 6.2e-19 97.8 72 70.8
CSS0019460 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D003888 8.0e-19 97.4 72 70.8
Lj5g0025980 Lotus japonicus HOM05D000688 ORTHO05D003888 8.0e-19 97.4 80 65.0
Nn2g14058 Nelumbo nucifera HOM05D000688 ORTHO05D003888 8.0e-19 97.4 72 73.6
Ah.01g004280 Amaranthus hybridus HOM05D000688 ORTHO05D003888 1.1e-18 97.1 73 68.5
PGR031G2689 Punica granatum HOM05D000688 ORTHO05D003888 1.1e-18 97.1 73 69.9
Sc14g0004780 Simmondsia chinensis HOM05D000688 ORTHO05D003888 1.1e-18 97.1 73 69.9
CANSAT21G2099 Cannabis sativa HOM05D000688 ORTHO05D003888 1.8e-18 96.3 74 67.6
CiPaw.14G009900 Carya illinoinensis HOM05D000688 ORTHO05D003888 1.8e-18 96.3 73 72.6
DCAR_022371 Daucus carota HOM05D000688 ORTHO05D003888 1.8e-18 96.3 72 72.2
Dinv01617 Davidia involucrata HOM05D000688 ORTHO05D003888 1.8e-18 96.3 72 73.6
Migut.B01181 Erythranthe guttata HOM05D000688 ORTHO05D003888 1.8e-18 96.3 72 68.1
Nitab4.5_0000105g0140 Nicotiana tabacum HOM05D000688 ORTHO05D003888 1.8e-18 96.3 72 66.7
Nitab4.5_0004643g0010 Nicotiana tabacum HOM05D000688 ORTHO05D003888 1.8e-18 96.3 72 66.7
Peaxi162Scf00003g04511 Petunia axillaris HOM05D000688 ORTHO05D003888 1.8e-18 96.3 72 69.4
QL05p087351 Quercus lobata HOM05D000688 ORTHO05D003888 1.8e-18 96.3 79 68.4
SalBow4G1891 Salvia bowleyana HOM05D000688 ORTHO05D003888 3.1e-18 95.5 76 67.1
PSO339G4862 Papaver somniferum HOM05D000688 ORTHO05D003888 4.0e-18 95.1 72 70.8
PSO384G1949 Papaver somniferum HOM05D000688 ORTHO05D003888 4.0e-18 95.1 72 70.8
TPR.G29748 Trifolium pratense HOM05D000688 ORTHO05D003888 4.0e-18 95.1 74 64.9
Aa31LG9G7980 Aethionema arabicum HOM05D000688 ORTHO05D003888 5.2e-18 94.7 74 66.2
Medtr8g023445 Medicago truncatula HOM05D000688 ORTHO05D003888 5.2e-18 94.7 74 63.5
Solyc10g078880.2 Solanum lycopersicum HOM05D000688 ORTHO05D003888 6.8e-18 94.4 72 68.1
Sopen10g029500 Solanum pennellii HOM05D000688 ORTHO05D003888 6.8e-18 94.4 72 68.1
PGSC0003DMG400011445 Solanum tuberosum HOM05D000688 ORTHO05D003888 6.8e-18 94.4 72 68.1
CAN.G960.4 Capsicum annuum HOM05D000688 ORTHO05D003888 8.9e-18 94.0 72 68.1
EL10Ac1g01996 Beta vulgaris HOM05D000688 ORTHO05D003888 1.5e-17 93.2 73 65.8
Lsat_1_v5_gn_7_12221 Lactuca sativa HOM05D000688 ORTHO05D003888 1.5e-17 93.2 72 69.4
Sed0017010 Sechium edule HOM05D000688 ORTHO05D003888 1.5e-17 93.2 74 70.3
Eucgr.A00794 Eucalyptus grandis HOM05D000688 ORTHO05D003888 2.0e-17 92.8 73 68.5
SalBow5G4138 Salvia bowleyana HOM05D000688 ORTHO05D003888 2.0e-17 92.8 72 68.1
Ca_23464_v3 Cicer arietinum L. HOM05D000688 ORTHO05D003888 2.6e-17 92.4 74 62.2
Lalb_Chr01g0000861 Lupinus albus HOM05D000688 ORTHO05D003888 2.6e-17 92.4 70 71.4
Os03g0403100 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D003888 2.6e-17 92.4 72 70.8
TPR.G26445 Trifolium pratense HOM05D000688 ORTHO05D003888 2.6e-17 92.4 74 62.2
FvH4_5g31720 Fragaria vesca HOM05D000688 ORTHO05D003888 3.4e-17 92.0 75 66.7
FAN18G2226 Fragaria x ananassa HOM05D000688 ORTHO05D003888 3.4e-17 92.0 75 66.7
ECA236G1694 Erigeron canadensis HOM05D000688 ORTHO05D003888 4.4e-17 91.7 72 65.3
HanXRQChr04g0119821 Helianthus annuus HOM05D000688 ORTHO05D003888 4.4e-17 91.7 72 65.3
RcHm_v2.0_Chr7g0227611 Rosa chinensis HOM05D000688 ORTHO05D003888 4.4e-17 91.7 75 65.3
Phvul.004G175000 Phaseolus vulgaris HOM05D000688 ORTHO05D003888 5.8e-17 91.3 73 65.8
Migut.B01180 Erythranthe guttata HOM05D000688 ORTHO05D003888 7.5e-17 90.9 72 65.3
TAR371G0646 Trochodendron aralioides HOM05D000688 ORTHO05D003888 7.5e-17 90.9 72 68.1
TAR376G0407 Trochodendron aralioides HOM05D000688 ORTHO05D003888 7.5e-17 90.9 72 69.4
FAN13G2193 Fragaria x ananassa HOM05D000688 ORTHO05D003888 9.8e-17 90.5 76 65.8
MBI01_g22371_MAGBIO Magnolia biondii HOM05D000688 ORTHO05D003888 9.8e-17 90.5 72 68.1
FAN08G2264 Fragaria x ananassa HOM05D000688 ORTHO05D003888 1.3e-16 90.1 75 65.3
Zm00001eb269100 Zea mays HOM05D000688 ORTHO05D003888 1.3e-16 90.1 72 69.4
MELO3C024455.2 Cucumis melo HOM05D000688 ORTHO05D003888 2.9e-16 89.0 74 70.3
CsaV3_7G035430 Cucumis sativus L. HOM05D000688 ORTHO05D003888 2.9e-16 89.0 74 70.3
HPP92_018385 Vanilla planifolia HOM05D000688 ORTHO05D003888 2.9e-16 89.0 80 57.5
VMungo0464G0248 Vigna mungo HOM05D000688 ORTHO05D003888 2.9e-16 89.0 73 65.8
Aqoxy4G01311 Aquilegia oxysepala HOM05D000688 ORTHO05D003888 3.7e-16 88.6 76 61.8
Aqoxy6G00568 Aquilegia oxysepala HOM05D000688 ORTHO05D003888 3.7e-16 88.6 76 61.8
Lj3g0004991 Lotus japonicus HOM05D000688 ORTHO05D003888 8.3e-16 87.4 73 60.3
BcaNung00311 Brassica carinata HOM05D000688 ORTHO05D003888 1.1e-15 87.0 62 74.2
Aqoxy3G02794 Aquilegia oxysepala HOM05D000688 ORTHO05D003888 1.4e-15 86.7 76 60.5
TWI63G1180 Tripterygium wilfordii HOM05D000688 ORTHO05D003888 1.4e-15 86.7 75 66.7
DCAR_012513 Daucus carota HOM05D000688 ORTHO05D003888 4.1e-15 85.1 53 81.1
Oeu006782.2 Olea europaea HOM05D000688 ORTHO05D003888 7.0e-15 84.3 53 77.4
SGA_v2.0_scaffold195G40824 Striga asiatica HOM05D000688 ORTHO05D003888 1.2e-14 83.6 72 61.1
HanXRQChr06g0183351 Helianthus annuus HOM05D000688 ORTHO05D003888 1.0e-13 80.5 74 60.8
Eucgr.E00987 Eucalyptus grandis HOM05D000688 ORTHO05D016546 3.9e-13 78.6 82 53.7
SMO171G0074 Selaginella moellendorffii HOM05D000688 ORTHO05D003888 6.6e-13 77.8 76 55.3
SEGI_07418 Sequoiadendron giganteum HOM05D000688 ORTHO05D016546 1.1e-12 77.0 73 54.8
AagrBONN_evm.TU.Sc2ySwM_344.1343 Anthoceros agrestis HOM05D000688 ORTHO05D003888 9.5e-12 73.9 73 52.1
CAN.G960.25 Capsicum annuum HOM05D000688 ORTHO05D003888 9.5e-12 73.9 53 71.7
Nitab4.5_0000196g0090 Nicotiana tabacum HOM05D000688 ORTHO05D016546 9.5e-12 73.9 53 67.9
Pp3c18_11070 Physcomitrium patens HOM05D000688 ORTHO05D003888 9.5e-12 73.9 76 53.9
Mapoly0097s0027 Marchantia polymorpha HOM05D000688 ORTHO05D003888 1.8e-10 69.7 73 49.3
MCO04G463 Micromonas commoda HOM05D000688 ORTHO05D003888 2.3e-10 69.3 71 54.9
Cfa019815 Carpinus fangiana HOM05D000688 ORTHO05D016546 4.0e-10 68.6 58 63.8
AUR62036901 Chenopodium quinoa HOM05D000688 ORTHO05D003888 1.5e-09 66.6 40 80.0
TPR.G16383 Trifolium pratense HOM05D000688 ORTHO05D003888 2.0e-09 66.2 71 52.1
Lj3A924G39 Lonicera japonica HOM05D000688 ORTHO05D016546 4.9e-08 61.6 45 66.7
arahy.Tifrunner.gnm1.ann1.RHTP8A Arachis hypogaea HOM05D000688 ORTHO05D003888 8.3e-08 60.8 53 58.5
arahy.Tifrunner.gnm1.ann1.W6893Z Arachis hypogaea HOM05D000688 ORTHO05D003888 8.3e-08 60.8 53 58.5
CBR_g48573 Chara braunii HOM05D000688 ORTHO05D003888 1.4e-07 60.1 73 47.9
Hma1.2p1_1342F.1_g276980 Hydrangea macrophylla HOM05D000688 ORTHO05D016546 1.4e-07 60.1 40 77.5
Medtr1g022135 Medicago truncatula HOM05D000688 ORTHO05D003888 4.1e-07 58.5 37 73.0
unitig_22.g5333 Utricularia gibba HOM05D000688 ORTHO05D003888 5.4e-07 58.2 39 64.1


User provided reference genes

Program Settings