Gene: Solyc10g078860.2
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc10g078860.2
- Transcript Identifier Solyc10g078860.2.1
- Gene Type Coding gene
- Location SL4.0ch10 : 59645389-59650826 : negative
Gene Family Information
- ID HOM05D000688
- #Genes/#Species 832/100
- Phylogenetic origin
- ID ORTHO05D003888
- #Genes/#Species 200/99
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Solyc10g078860.2.1
- uniprot A0A3Q7JET0
- gene_id Solyc10g078860
Descriptions
- Description DNA-directed RNA polymerase subunit beta (AHRD V3.3 *** A0A2G3BHQ3_CAPCH)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | GOA Database | transcription, DNA-templated | |
| GO:0006351 | IEA | InterPro | transcription, DNA-templated | |
| GO:0009561 | ISO | PLAZA Integrative Orthology | megagametogenesis | AT5G45140 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003899 | IBA IEA | GOA Database | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0032549 | IEA | GOA Database | ribonucleoside binding | |
| GO:0032549 | IEA | InterPro | ribonucleoside binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0016779 | IEA | GOA Database | nucleotidyltransferase activity | |
| GO:0016740 | IEA | GOA Database | transferase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005666 | IBA | GOA Database | RNA polymerase III complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007645 | RNA polymerase Rpb2, domain 3 |
| IPR007642 | RNA polymerase Rpb2, domain 2 |
| IPR014724 | RNA polymerase Rpb2, OB-fold |
| IPR007641 | RNA polymerase Rpb2, domain 7 |
| IPR015712 | DNA-directed RNA polymerase, subunit 2 |
| IPR007646 | RNA polymerase Rpb2, domain 4 |
| IPR007647 | RNA polymerase Rpb2, domain 5 |
| IPR007120 | DNA-directed RNA polymerase, subunit 2, hybrid-binding domain |
| IPR037033 | DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily |
| IPR007644 | RNA polymerase, beta subunit, protrusion |
| IPR037034 | RNA polymerase Rpb2, domain 2 superfamily |
| Mapman id | Description |
|---|---|
| 15.1.3.2 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol III catalytic components.subunit 2 |