Gene: COL.COLO4_05983
General Information
Structural Information
- Species Corchorus olitorius
- Gene Identifier COL.COLO4_05983
- Transcript Identifier COL.rna4803
- Gene Type Coding gene
- Location AWUE01012540.1 : 163-16993 : negative
Gene Family Information
- ID HOM05D000688
- #Genes/#Species 832/100
- Phylogenetic origin
- ID ORTHO05D003888
- #Genes/#Species 200/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid rna4803
- GenBank OMP08928.1
- id gene5955
- gene_name COLO4_05983
- uniprot A0A1R3KPI3
Descriptions
- Description hypothetical protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | GOA Database | transcription, DNA-templated | |
| GO:0006351 | IEA | InterPro | transcription, DNA-templated | |
| GO:0009561 | ISO | PLAZA Integrative Orthology | megagametogenesis | AT5G45140 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003899 | IEA | GOA Database | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0016779 | IEA | GOA Database | nucleotidyltransferase activity | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0032549 | IEA | GOA Database | ribonucleoside binding | |
| GO:0032549 | IEA | InterPro | ribonucleoside binding |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR015712 | DNA-directed RNA polymerase, subunit 2 |
| IPR037033 | DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily |
| IPR014724 | RNA polymerase Rpb2, OB-fold |
| IPR007642 | RNA polymerase Rpb2, domain 2 |
| IPR007120 | DNA-directed RNA polymerase, subunit 2, hybrid-binding domain |
| IPR007646 | RNA polymerase Rpb2, domain 4 |
| IPR007647 | RNA polymerase Rpb2, domain 5 |
| IPR037034 | RNA polymerase Rpb2, domain 2 superfamily |
| IPR007644 | RNA polymerase, beta subunit, protrusion |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |