Gene: AT5G45140

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G45140
  • Transcript Identifier AT5G45140.1
  • Gene Type Coding gene
  • Location Chr5 : 18247416-18257713 : negative

Gene Family Information

  • ID HOM05D000688
  • #Genes/#Species 832/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G45140.1
  • symbol NRPC2
  • uniprot F4KD38

Descriptions

  • Description nuclear RNA polymerase C2
  • Computational description nuclear RNA polymerase C2 (NRPC2); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase Rpb2, domain 4 (InterPro:IPR007646), RNA polymerase Rpb2, domain 5 (InterPro:IPR007647), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase family protein (TAIR:AT4G21710.1); Has 31946 Blast hits to 25220 proteins in 8516 species: Archae - 496; Bacteria - 14545; Metazoa - 599; Fungi - 7189; Plants - 2320; Viruses - 240; Other Eukaryotes - 6557 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006351
IEA
Gene Ontologytranscription, DNA-templated
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0009561
IMP
Gene Ontologymegagametogenesis1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003899
IBA
IEA
Gene OntologyDNA-directed 5'-3' RNA polymerase activity2
GO:0003899
IEA
InterProDNA-directed 5'-3' RNA polymerase activity
GO:0032549
IEA
Gene Ontologyribonucleoside binding
GO:0032549
IEA
InterProribonucleoside binding
GO:0003677
IEA
Gene OntologyDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0016779
IEA
GOA Databasenucleotidyltransferase activity
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005666
IBA
Gene OntologyRNA polymerase III complex2
GO:0009507
ISM
Gene Ontologychloroplast

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007644 RNA polymerase, beta subunit, protrusion
IPR007647 RNA polymerase Rpb2, domain 5
IPR014724 RNA polymerase Rpb2, OB-fold
IPR007642 RNA polymerase Rpb2, domain 2
IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily
IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
IPR015712 DNA-directed RNA polymerase, subunit 2
IPR007645 RNA polymerase Rpb2, domain 3
IPR007641 RNA polymerase Rpb2, domain 7
IPR007646 RNA polymerase Rpb2, domain 4
IPR037034 RNA polymerase Rpb2, domain 2 superfamily
Mapman id Description
15.1.3.2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol III catalytic components.subunit 2