Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G117200 Gossypium raimondii HOM05D000964 ORTHO05D004047 2.4e-36 154.8 71 100.0
Gohir.D02G103150 Gossypium hirsutum HOM05D000964 ORTHO05D004047 7.3e-33 143.3 71 93.0
Gohir.1Z050334 Gossypium hirsutum HOM05D000964 ORTHO05D004047 5.2e-31 137.1 70 92.9
Gohir.A12G025100 Gossypium hirsutum HOM05D000964 ORTHO05D004047 5.2e-31 137.1 70 92.9
Gohir.D02G179050 Gossypium hirsutum HOM05D000964 ORTHO05D004047 5.2e-31 137.1 70 92.9
Duzib165G0005 Durio zibethinus HOM05D000964 ORTHO05D004047 4.4e-30 134.0 69 91.3
Gohir.D01G102099 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.9e-29 131.3 70 90.0
Gorai.010G120000 Gossypium raimondii HOM05D000964 ORTHO05D004047 3.7e-29 131.0 69 85.5
Gohir.A09G245632 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.1e-28 129.4 69 89.9
Peaxi162Scf00527g00039 Petunia axillaris HOM05D000964 ORTHO05D004047 3.2e-28 127.9 70 85.7
Peaxi162Scf00705g00612 Petunia axillaris HOM05D000964 ORTHO05D004047 3.2e-28 127.9 70 85.7
PGSC0003DMG400014075 Solanum tuberosum HOM05D000964 ORTHO05D004047 3.2e-28 127.9 70 85.7
Gorai.004G205100 Gossypium raimondii HOM05D000964 ORTHO05D004047 9.2e-28 126.3 69 85.5
CAN.G1595.4 Capsicum annuum HOM05D000964 ORTHO05D004047 1.2e-27 125.9 70 84.3
Gohir.A05G326924 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.2e-27 125.9 69 88.4
Oeu058362.1 Olea europaea HOM05D000964 ORTHO05D004047 1.6e-27 125.6 70 84.3
Cpa.g.c42072 Carica papaya HOM05D000964 ORTHO05D004047 2.0e-27 125.2 70 84.3
CAN.G327.18 Capsicum annuum HOM05D000964 ORTHO05D004047 3.5e-27 124.4 69 84.1
RcHm_v2.0_CPg0501901 Rosa chinensis HOM05D000964 ORTHO05D004047 1.3e-26 122.5 70 82.9
PGSC0003DMG400002472 Solanum tuberosum HOM05D000964 ORTHO05D004047 1.3e-26 122.5 70 82.9
EL10As12g24034 Beta vulgaris HOM05D000964 ORTHO05D004047 3.0e-26 121.3 69 81.2
PGR111G0002 Punica granatum HOM05D000964 ORTHO05D004047 5.0e-26 120.6 70 81.4
Hma1.2p1_0818F.1_g223310 Hydrangea macrophylla HOM05D000631 ORTHO05D004047 6.6e-26 120.2 70 80.0
Hma1.2p1_0818F.1_g223330 Hydrangea macrophylla HOM05D000964 ORTHO05D004047 6.6e-26 120.2 70 80.0
DCAR_032517 Daucus carota HOM05D000964 ORTHO05D004047 8.6e-26 119.8 71 81.7
Nn002s41359 Nelumbo nucifera HOM05D000964 ORTHO05D004047 8.6e-26 119.8 70 81.4
Nn049s41916 Nelumbo nucifera HOM05D000964 ORTHO05D004047 8.6e-26 119.8 70 81.4
Nn070s42369 Nelumbo nucifera HOM05D000964 ORTHO05D004047 8.6e-26 119.8 70 81.4
Gohir.D08G194628 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.5e-25 119.0 69 81.2
HanXRQChr00c0392g0574491 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-25 119.0 70 80.0
HanXRQChr00c0394g0574561 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-25 119.0 70 80.0
HanXRQChr00c0593g0576341 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-25 119.0 70 80.0
HanXRQChr01g0020241 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-25 119.0 70 80.0
HanXRQChr04g0127511 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-25 119.0 70 80.0
HanXRQChr05g0152581 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-25 119.0 70 80.0
HanXRQChr10g0284361 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-25 119.0 70 80.0
HanXRQChr10g0318081 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-25 119.0 70 80.0
HanXRQChr11g0321081 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-25 119.0 70 80.0
HanXRQChr11g0326941 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-25 119.0 70 80.0
HanXRQChr12g0369841 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-25 119.0 70 80.0
HanXRQCPg0580161 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-25 119.0 70 80.0
Migut.D01434 Erythranthe guttata HOM05D000964 ORTHO05D004047 1.9e-25 118.6 69 79.7
Lj2C1239T2 Lonicera japonica HOM05D000964 ORTHO05D004047 1.9e-25 118.6 70 78.6
Lj2P1237T122 Lonicera japonica HOM05D000964 ORTHO05D004047 1.9e-25 118.6 70 78.6
Lju5009P0T55 Lonicera japonica HOM05D000964 ORTHO05D004047 1.9e-25 118.6 70 78.6
Gorai.013G106800 Gossypium raimondii HOM05D000964 ORTHO05D004047 3.3e-25 117.9 70 82.9
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 3.3e-25 117.9 70 78.6
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 3.3e-25 117.9 70 78.6
Lsat_1_v5_gn_7_96560 Lactuca sativa HOM05D000964 ORTHO05D004047 3.3e-25 117.9 70 78.6
CAN.G1478.7 Capsicum annuum HOM05D000964 ORTHO05D004047 4.3e-25 117.5 70 80.0
Nn5g30296 Nelumbo nucifera HOM05D000964 ORTHO05D004047 7.3e-25 116.7 70 80.0
EL10Ac4g07915 Beta vulgaris HOM05D000890 ORTHO05D000697 9.5e-25 116.3 69 78.3
Oeu064090.1 Olea europaea HOM05D000964 ORTHO05D004047 1.2e-24 115.9 70 77.1
arahy.Tifrunner.gnm1.ann1.918II3 Arachis hypogaea HOM05D000964 ORTHO05D004047 1.6e-24 115.5 70 80.0
Gohir.A01G137773 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.1e-24 115.2 56 92.9
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 2.1e-24 115.2 70 77.1
Oeu012810.1 Olea europaea HOM05D000964 ORTHO05D004047 2.1e-24 115.2 70 77.1
PGSC0003DMG400003335 Solanum tuberosum HOM05D000964 ORTHO05D004047 2.1e-24 115.2 70 77.1
PSO478G2461 Papaver somniferum HOM05D000964 ORTHO05D004047 4.7e-24 114.0 70 77.1
PSO548G0113 Papaver somniferum HOM05D000964 ORTHO05D004047 4.7e-24 114.0 70 77.1
Gohir.A08G063300 Gossypium hirsutum HOM05D000964 ORTHO05D004047 6.2e-24 113.6 55 92.7
HanXRQChr11g0345261 Helianthus annuus HOM05D000964 ORTHO05D004047 8.0e-24 113.2 70 77.1
Sed0010415 Sechium edule HOM05D000964 ORTHO05D003870 1.1e-23 112.8 70 74.3
Sed0021757 Sechium edule HOM05D000964 ORTHO05D003870 1.1e-23 112.8 70 74.3
Sed0026352 Sechium edule HOM05D000964 ORTHO05D004047 1.1e-23 112.8 70 74.3
Hund08803 Selenicereus undatus HOM05D000964 ORTHO05D004047 1.1e-23 112.8 70 74.3
Hund29611 Selenicereus undatus HOM05D000964 ORTHO05D004047 1.1e-23 112.8 70 74.3
Lsat_1_v5_gn_5_50401 Lactuca sativa HOM05D000964 ORTHO05D004047 1.4e-23 112.5 70 74.3
Hund29571 Selenicereus undatus HOM05D000964 ORTHO05D004047 1.8e-23 112.1 69 75.4
Hund30094 Selenicereus undatus HOM05D000964 ORTHO05D004047 1.8e-23 112.1 69 75.4
Hund30271 Selenicereus undatus HOM05D000964 ORTHO05D004047 1.8e-23 112.1 69 75.4
Hund31408 Selenicereus undatus HOM05D000964 ORTHO05D004047 1.8e-23 112.1 69 75.4
BNapus_Darmor_BZH_scaffold_253p00330 Brassica napus HOM05D000964 ORTHO05D004047 2.3e-23 111.7 70 71.4
BolSC29t60485H Brassica oleracea HOM05D000964 ORTHO05D004047 2.3e-23 111.7 70 71.4
BolSC29t60607H Brassica oleracea HOM05D000964 ORTHO05D004047 2.3e-23 111.7 70 71.4
BolSC46t61018H Brassica oleracea HOM05D000964 ORTHO05D004047 2.3e-23 111.7 70 71.4
BolSC49t61165H Brassica oleracea HOM05D000964 ORTHO05D004047 2.3e-23 111.7 70 71.4
BraA06t25382Z Brassica rapa HOM05D000964 ORTHO05D004047 2.3e-23 111.7 70 71.4
BraSC143t45635Z Brassica rapa HOM05D000964 ORTHO05D004047 2.3e-23 111.7 70 71.4
HanXRQChr10g0303891 Helianthus annuus HOM05D000964 ORTHO05D004047 3.1e-23 111.3 70 75.7
Medtr4g051380 Medicago truncatula HOM05D000964 ORTHO05D004047 4.0e-23 110.9 70 77.1
Nitab4.5_0004376g0120 Nicotiana tabacum HOM05D000964 ORTHO05D004047 4.0e-23 110.9 69 73.9
MSTRG.11748 Avicennia marina HOM05D000964 ORTHO05D004047 5.2e-23 110.5 69 75.4
ATCG00740 Arabidopsis thaliana HOM05D000964 ORTHO05D004047 6.8e-23 110.2 70 71.4
LjContig00318g0022290 Lotus japonicus HOM05D000964 ORTHO05D004047 8.9e-23 109.8 70 74.3
LjContig00319g0012184 Lotus japonicus HOM05D000964 ORTHO05D004047 8.9e-23 109.8 70 74.3
LjContig00319g0026138 Lotus japonicus HOM05D000964 ORTHO05D004047 8.9e-23 109.8 70 74.3
Nitab4.5_0020737g0020 Nicotiana tabacum HOM05D000964 ORTHO05D004047 8.9e-23 109.8 65 73.8
MELO3C000951.2 Cucumis melo HOM05D000964 ORTHO05D004047 2.0e-22 108.6 69 72.5
MELO3C027953.2 Cucumis melo HOM05D000964 ORTHO05D004047 2.0e-22 108.6 69 72.5
EL10Ac5g11667 Beta vulgaris HOM05D000964 ORTHO05D004047 2.6e-22 108.2 69 73.9
BraSC58t46439Z Brassica rapa HOM05D000964 ORTHO05D004047 3.4e-22 107.8 68 70.6
CsaV3_3G019080 Cucumis sativus L. HOM05D000964 ORTHO05D004047 3.4e-22 107.8 69 72.5
Nitab4.5_0001564g0040 Nicotiana tabacum HOM05D000964 ORTHO05D004047 3.4e-22 107.8 69 73.9
CARHR282230 Cardamine hirsuta HOM05D000964 ORTHO05D004047 4.4e-22 107.5 70 68.6
AL2G20580 Arabidopsis lyrata HOM05D000964 ORTHO05D004047 5.8e-22 107.1 70 70.0
AL2G21700 Arabidopsis lyrata HOM05D000964 ORTHO05D004047 5.8e-22 107.1 70 70.0
ClCG11G017180 Citrullus lanatus HOM05D000964 ORTHO05D004047 9.8e-22 106.3 70 71.4
Oeu012812.1 Olea europaea HOM05D000964 ORTHO05D004047 1.3e-21 105.9 69 71.0
arahy.Tifrunner.gnm1.ann1.YUC9G4 Arachis hypogaea HOM05D000964 ORTHO05D004047 1.7e-21 105.5 69 75.4
Lalb_Chr25g0283351 Lupinus albus HOM05D000964 ORTHO05D004047 1.7e-21 105.5 69 73.9
Psat5g068400 Pisum sativum HOM05D000964 ORTHO05D004047 4.9e-21 104.0 70 68.6
TWI75G0222 Tripterygium wilfordii HOM05D000964 ORTHO05D004047 6.4e-21 103.6 66 75.8
MELO3C033568.2 Cucumis melo HOM05D000964 ORTHO05D004047 7.0e-20 100.1 69 65.2
Psat7g045240 Pisum sativum HOM05D000964 ORTHO05D004047 7.0e-20 100.1 70 70.0
Solyc12g035890.3 Solanum lycopersicum HOM05D000964 ORTHO05D004047 2.7e-19 98.2 68 66.2
Psat4g041120 Pisum sativum HOM05D000964 ORTHO05D004047 3.5e-19 97.8 70 65.7
Atru.chr12.312 Acer truncatum HOM05D000964 ORTHO05D004047 3.0e-18 94.7 50 82.0
Lalb_Chr03g0039311 Lupinus albus HOM05D000964 ORTHO05D004047 3.9e-18 94.4 69 68.1
Hund08596 Selenicereus undatus HOM05D000964 ORTHO05D004047 5.1e-18 94.0 66 69.7
Medtr0002s0760 Medicago truncatula HOM05D000964 ORTHO05D004047 1.1e-17 92.8 69 63.8
Hund07962 Selenicereus undatus HOM05D000964 ORTHO05D004047 4.3e-17 90.9 66 66.7
Nitab4.5_0000014g0500 Nicotiana tabacum HOM05D000964 ORTHO05D004047 5.6e-17 90.5 54 79.6
Sed0000903 Sechium edule HOM05D000964 ORTHO05D004047 5.6e-17 90.5 56 73.2
arahy.Tifrunner.gnm1.ann1.93R6SD Arachis hypogaea HOM05D000964 ORTHO05D004047 4.7e-16 87.4 69 63.8
BraSC58t46500Z Brassica rapa HOM05D000964 ORTHO05D004047 4.7e-16 87.4 48 75.0
Solyc00g500157.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 4.7e-16 87.4 70 64.3
Solyc09g050062.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 4.7e-16 87.4 70 64.3
C02p60150 Brassica napus HOM05D000964 ORTHO05D004047 4.0e-15 84.3 70 57.1
HanXRQChr02g0052621 Helianthus annuus HOM05D000964 ORTHO05D003870 4.0e-15 84.3 44 84.1
Gohir.D03G062001 Gossypium hirsutum HOM05D000964 ORTHO05D004047 7.5e-14 80.1 70 62.9
Lalb_Chr20g0115411 Lupinus albus HOM05D000964 ORTHO05D004047 7.5e-14 80.1 48 72.9
TPR.G38392 Trifolium pratense HOM05D000964 ORTHO05D004047 1.3e-13 79.3 61 62.3
HanXRQChr03g0068101 Helianthus annuus HOM05D000964 ORTHO05D004047 2.2e-13 78.6 43 81.4
Atru.chr12.2306 Acer truncatum HOM05D000964 ORTHO05D004047 4.9e-13 77.4 48 68.8
SEGI_04931 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 4.9e-13 77.4 71 53.5
SEGI_17120 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 4.9e-13 77.4 71 53.5
SEGI_21589 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 4.9e-13 77.4 71 53.5
SEGI_31867 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 4.9e-13 77.4 71 53.5
SEGI_32358 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 4.9e-13 77.4 71 53.5
SEGI_33647 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 4.9e-13 77.4 71 53.5
SEGI_36889 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 4.9e-13 77.4 71 53.5
Solyc01g017440.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 4.9e-13 77.4 45 75.6
HanXRQChr15g0486541 Helianthus annuus HOM05D000964 ORTHO05D004047 1.1e-12 76.3 48 75.0
HPP92_028393 Vanilla planifolia HOM05D000964 ORTHO05D004047 1.9e-12 75.5 69 56.5
HPP92_028402 Vanilla planifolia HOM05D000964 ORTHO05D004047 1.9e-12 75.5 69 56.5
HPP92_028410 Vanilla planifolia HOM05D000964 ORTHO05D004047 1.9e-12 75.5 69 56.5
SEGI_22757 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.6e-11 72.4 71 50.7
SEGI_02369 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 2.7e-11 71.6 68 51.5
BNapus_Darmor_BZH_scaffold_287p00260 Brassica napus HOM05D000964 ORTHO05D004047 1.3e-10 69.3 38 73.7
Pp3c5_15590 Physcomitrium patens HOM05D000964 ORTHO05D004047 1.7e-10 68.9 70 50.0
Gohir.A12G228525 Gossypium hirsutum HOM05D000964 ORTHO05D004047 5.1e-10 67.4 37 83.8
Psat5g206600 Pisum sativum HOM05D000964 ORTHO05D004047 5.1e-10 67.4 37 75.7
Gohir.D08G145550 Gossypium hirsutum HOM05D000964 ORTHO05D003870 1.1e-09 66.2 42 71.4
SMO086G0025 Selaginella moellendorffii HOM05D000964 ORTHO05D004047 1.5e-09 65.9 70 45.7
Gorai.004G150700 Gossypium raimondii HOM05D000964 ORTHO05D003870 9.5e-09 63.2 47 63.8
Zm00001eb255890 Zea mays HOM05D000964 ORTHO05D004047 1.6e-08 62.4 41 65.9
Zm00001eb434880 Zea mays HOM05D000964 ORTHO05D004047 1.6e-08 62.4 41 65.9
Zm00001eb435090 Zea mays HOM05D000964 ORTHO05D004047 1.6e-08 62.4 41 65.9
Zm00001eb435140 Zea mays HOM05D000964 ORTHO05D004047 1.6e-08 62.4 41 65.9
Zm00001eb435360 Zea mays HOM05D000964 ORTHO05D004047 1.6e-08 62.4 41 65.9
EL10Ac4g08559 Beta vulgaris HOM05D000964 ORTHO05D004047 1.1e-07 59.7 32 81.2
RcHm_v2.0_Chr5g0083591 Rosa chinensis HOM05D000964 ORTHO05D004047 5.2e-07 57.4 28 85.7
Psat6g111000 Pisum sativum HOM05D000964 ORTHO05D004047 6.8e-07 57.0 30 76.7
Gorai.007G252200 Gossypium raimondii HOM05D000964 ORTHO05D004047 1.2e-06 56.2 30 86.7
CSS0021839 Camellia sinensis var. sinensis HOM05D000964 ORTHO05D004047 5.8e-06 53.9 70 51.4
HanXRQChr08g0207991 Helianthus annuus HOM05D000964 ORTHO05D003870 9.9e-06 53.1 25 88.0


User provided reference genes

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