Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.3e-203 713.0 416 100.0
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 7.4e-202 707.2 416 99.5
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 9.6e-202 706.8 416 99.5
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 2.1e-188 662.5 416 91.8
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 7.9e-188 660.6 417 91.1
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.2e-182 642.5 419 83.5
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 1.6e-180 636.3 416 89.4
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.3e-178 628.6 419 86.6
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 8.2e-177 624.0 421 82.9
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 2.2e-174 615.9 418 87.3
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 1.4e-171 606.7 417 83.0
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 4.0e-171 605.1 416 84.6
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 1.5e-170 603.2 417 82.7
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 4.4e-170 601.7 421 81.5
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 7.5e-170 600.9 423 83.5
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 8.2e-169 597.4 421 78.6
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 3.1e-168 595.5 417 82.3
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 9.1e-168 594.0 419 78.3
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 1.6e-167 593.2 418 82.1
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 2.0e-167 592.8 418 80.6
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 5.9e-167 591.3 420 80.5
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 5.9e-167 591.3 428 81.1
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 1.0e-166 590.5 415 80.2
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 6.5e-166 587.8 418 83.7
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 1.5e-165 586.6 423 81.8
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 3.2e-165 585.5 423 78.3
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 7.2e-165 584.3 418 74.2
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 9.4e-165 583.9 418 80.1
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 1.2e-164 583.6 417 80.6
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 1.2e-164 583.6 420 81.2
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 4.0e-163 578.6 425 79.3
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 6.8e-163 577.8 416 77.4
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 1.5e-162 576.6 430 78.8
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 2.0e-162 576.2 419 79.2
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 3.4e-162 575.5 430 78.6
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 2.8e-161 572.4 428 75.7
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 2.8e-161 572.4 416 73.6
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 3.7e-161 572.0 416 80.8
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 8.3e-161 570.9 417 79.9
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 1.4e-160 570.1 428 76.4
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.4e-160 570.1 415 74.0
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 5.4e-160 568.2 417 79.6
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 7.0e-160 567.8 421 72.4
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 1.0e-158 563.9 424 81.4
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 6.5e-158 561.2 418 77.8
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 1.5e-157 560.1 418 74.4
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 1.5e-157 560.1 417 75.3
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 1.2e-156 557.0 417 79.9
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 6.1e-156 554.7 415 73.7
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 8.0e-156 554.3 417 78.4
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 1.4e-155 553.5 422 76.5
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 4.0e-155 552.0 418 77.3
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 4.0e-155 552.0 419 72.6
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 2.0e-154 549.7 415 72.0
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 1.4e-152 543.5 436 74.5
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 1.7e-150 536.6 426 73.0
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 2.9e-150 535.8 423 73.0
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 6.6e-150 534.6 401 77.1
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 6.6e-150 534.6 420 72.6
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 1.5e-149 533.5 420 70.5
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 8.0e-148 527.7 400 77.0
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 4.0e-147 525.4 421 71.0
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 1.2e-146 523.9 417 74.1
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 7.0e-144 514.6 419 65.6
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 3.9e-142 508.8 423 64.5
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 3.9e-142 508.8 398 75.6
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 2.5e-141 506.1 421 65.3
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.6e-140 503.4 418 71.1
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 3.6e-140 502.3 333 77.5
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 3.6e-140 502.3 388 79.1
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 6.2e-140 501.5 417 66.2
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 6.2e-140 501.5 418 71.5
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 8.0e-140 501.1 333 77.8
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 9.8e-138 494.2 431 64.3
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 2.9e-137 492.7 421 64.4
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 4.9e-137 491.9 436 68.8
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 8.3e-137 491.1 431 62.6
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 8.3e-137 491.1 418 70.6
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 1.9e-136 490.0 423 69.3
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 2.4e-136 489.6 432 63.9
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.7e-135 486.1 427 69.6
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 6.0e-135 485.0 333 79.0
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 6.0e-135 485.0 333 79.0
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 2.3e-134 483.0 326 76.1
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 3.9e-134 482.3 331 76.1
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 6.6e-134 481.5 438 67.1
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 6.6e-134 481.5 428 62.1
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 4.3e-133 478.8 441 66.9
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 2.1e-132 476.5 419 66.8
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 2.8e-132 476.1 425 63.1
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 6.2e-132 474.9 420 60.2
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 4.0e-131 472.2 435 63.4
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 5.2e-131 471.9 429 65.0
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 5.8e-130 468.4 426 61.7
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 7.5e-130 468.0 425 61.9
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 9.8e-130 467.6 425 62.1
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 2.2e-129 466.5 425 62.4
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 2.9e-129 466.1 428 66.8
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 3.5e-127 459.1 399 65.2
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 4.6e-127 458.8 422 62.1
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 7.3e-125 451.4 407 61.9
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 5.2e-115 418.7 451 61.6
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 4.2e-112 409.1 398 58.0
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 2.1e-111 406.8 377 59.9
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 8.7e-110 401.4 221 89.1
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 4.8e-108 395.6 377 58.1
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.1e-107 394.4 425 53.9
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 5.8e-106 388.7 414 57.7
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 1.3e-102 377.5 289 72.3
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 4.3e-101 372.5 415 55.4
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 1.6e-95 354.0 444 54.7
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 4.0e-91 339.3 295 64.1
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 4.6e-87 325.9 283 72.4
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 3.0e-86 323.2 272 62.5
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 3.2e-80 303.1 282 61.3
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 1.0e-78 298.1 160 93.8
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 3.0e-78 296.6 340 51.5
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 3.3e-77 293.1 352 50.9
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 9.7e-77 291.6 167 88.0
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 1.7e-68 264.2 240 60.4
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 1.8e-62 244.2 139 89.2
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 3.1e-59 233.4 158 71.5
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 3.6e-55 219.9 115 92.2
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 2.4e-51 207.2 168 63.1
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 1.5e-48 198.0 115 88.7
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 8.8e-46 188.7 124 75.8
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 2.6e-45 187.2 159 61.6
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 7.5e-45 185.7 288 46.9
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 5.0e-41 172.9 254 43.7
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 7.2e-40 169.1 156 52.6
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 2.2e-36 157.5 411 35.0
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 5.2e-30 136.3 153 51.0
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 9.8e-29 132.1 64 98.4
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.9e-28 130.6 64 96.9
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 2.9e-28 130.6 64 96.9
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 4.9e-28 129.8 165 47.9
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.4e-27 128.3 64 95.3
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 1.8e-27 127.9 116 59.5
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 3.5e-26 123.6 141 61.0
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 1.3e-25 121.7 79 74.7
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 4.3e-24 116.7 97 61.9
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 4.3e-24 116.7 68 82.4
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 1.1e-22 112.1 66 80.3
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 1.1e-22 112.1 68 79.4
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 9.8e-21 105.5 157 46.5
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 1.6e-18 98.2 108 52.8
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 2.7e-10 70.9 69 52.2
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 2.7e-10 70.9 69 52.2
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 1.0e-09 68.9 49 73.5


User provided reference genes

Program Settings