Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 2.8e-255 884.8 456 100.0
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 1.8e-241 839.0 442 98.9
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 5.2e-241 837.4 440 98.4
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 2.6e-208 728.8 441 86.6
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 4.0e-201 704.9 434 85.5
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 1.1e-193 680.2 443 80.6
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 9.3e-190 667.2 447 79.9
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 7.4e-155 551.2 445 66.7
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 3.4e-152 542.3 422 68.0
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 8.5e-151 537.7 421 68.2
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 2.7e-149 532.7 444 67.1
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 6.1e-149 531.6 440 66.8
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 1.4e-145 520.4 422 66.4
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 9.1e-145 517.7 420 66.2
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 2.6e-144 516.2 424 65.3
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 7.7e-144 514.6 442 65.2
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 1.5e-142 510.4 419 63.0
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 1.6e-141 506.9 447 62.4
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 1.4e-140 503.8 423 64.5
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 5.7e-139 498.4 424 64.9
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 6.3e-138 495.0 419 65.2
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 6.3e-138 495.0 426 63.4
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 6.3e-138 495.0 418 63.4
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 1.4e-137 493.8 418 63.6
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 3.1e-137 492.7 427 63.5
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 3.5e-136 489.2 447 61.5
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 5.0e-135 485.3 420 63.6
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 6.5e-135 485.0 419 62.3
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 2.5e-134 483.0 445 62.0
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 1.2e-133 480.7 421 62.0
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 8.0e-133 478.0 434 61.3
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 1.0e-132 477.6 434 61.3
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 1.4e-132 477.2 424 62.7
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 2.2e-130 469.9 423 61.9
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 2.8e-130 469.5 418 61.5
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 2.8e-130 469.5 475 57.5
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 4.8e-130 468.8 424 61.8
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 2.7e-128 463.0 423 62.2
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 1.0e-127 461.1 421 58.9
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 1.3e-127 460.7 423 61.7
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 1.3e-127 460.7 423 61.7
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 1.7e-127 460.3 447 57.3
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 3.8e-127 459.1 423 61.9
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 4.2e-126 455.7 424 61.6
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 9.5e-126 454.5 453 57.6
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 9.8e-123 444.5 421 59.1
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 2.2e-122 443.4 484 54.8
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 2.8e-122 443.0 485 54.8
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 6.3e-122 441.8 481 54.1
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 3.1e-121 439.5 430 57.2
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 3.5e-120 436.0 483 54.0
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 5.9e-120 435.3 423 57.0
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 8.6e-119 431.4 417 55.6
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 1.5e-118 430.6 423 56.3
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 5.6e-118 428.7 493 51.9
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 5.6e-118 428.7 416 59.6
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 9.5e-118 427.9 440 55.9
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 6.1e-117 425.2 492 50.8
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 4.4e-115 419.1 417 56.8
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 7.5e-115 418.3 443 54.9
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 1.7e-114 417.2 484 53.5
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 2.9e-114 416.4 486 51.4
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 4.9e-114 415.6 493 51.9
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 1.8e-113 413.7 493 51.5
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 3.2e-113 412.9 427 55.7
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 2.3e-111 406.8 493 49.7
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 3.0e-111 406.4 420 54.5
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 6.6e-111 405.2 489 50.9
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 6.6e-111 405.2 489 50.9
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 8.6e-111 404.8 443 53.0
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 1.5e-110 404.1 487 50.7
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 1.5e-110 404.1 487 50.7
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 1.5e-110 404.1 441 53.3
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 2.5e-110 403.3 324 68.5
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 1.2e-109 401.0 417 54.0
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 1.2e-109 401.0 487 50.7
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 3.1e-108 396.4 442 51.6
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 9.2e-105 384.8 446 50.9
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 1.7e-98 364.0 436 49.1
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 2.2e-98 363.6 430 50.0
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 5.4e-97 359.0 315 63.5
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 7.8e-96 355.1 302 63.9
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 6.8e-92 342.0 348 53.7
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 2.1e-88 330.5 410 47.3
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.0e-83 313.9 417 45.6
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 4.9e-82 309.3 347 51.9
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 1.9e-81 307.4 429 45.5
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 8.7e-79 298.5 264 59.1
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 1.6e-77 294.3 348 50.9
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 4.8e-77 292.7 428 46.0
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 5.8e-75 285.8 417 43.2
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 2.2e-74 283.9 227 66.5
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 2.1e-72 277.3 330 49.7
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 1.4e-65 254.6 293 49.1
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 2.7e-64 250.4 285 52.3
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 3.8e-58 229.9 465 36.6
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 5.5e-57 226.1 342 43.9
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 4.6e-56 223.0 440 38.9
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 1.8e-55 221.1 440 38.2
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 1.3e-53 214.9 424 38.0
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 3.1e-52 210.3 169 68.0
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 6.5e-50 202.6 159 69.2
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 2.0e-43 181.0 221 46.2
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 1.3e-42 178.3 412 32.3
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 1.6e-40 171.4 164 59.1
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 4.8e-37 159.8 176 52.8
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 1.8e-36 157.9 115 73.0
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 1.5e-35 154.8 155 58.1
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 2.8e-29 134.0 120 60.8
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 6.3e-29 132.9 98 73.5
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 8.2e-29 132.5 188 45.7
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 2.2e-26 124.4 128 52.3
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 6.7e-23 112.8 76 81.6
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 3.7e-21 107.1 72 75.0
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 4.8e-21 106.7 76 71.1
BolC9t58995H Brassica oleracea HOM05D003939 ORTHO05D013368 1.9e-17 94.7 97 53.6
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 1.9e-17 94.7 70 67.1
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 7.2e-17 92.8 72 63.9
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 9.4e-17 92.4 70 67.1
TAR629G2192 Trochodendron aralioides HOM05D003939 ORTHO05D013368 8.8e-15 85.9 92 50.0
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 7.5e-14 82.8 252 30.2
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 3.1e-12 77.4 67 56.7
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 3.1e-12 77.4 67 56.7
ATR0064G012 Amborella trichopoda HOM05D003939 ORTHO05D013368 1.2e-11 75.5 67 55.2
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 3.8e-10 70.5 155 29.7
PSO013G0049 Papaver somniferum HOM05D003939 ORTHO05D013368 2.5e-09 67.8 81 46.9
MBI19_g32131_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 6.1e-08 63.2 61 57.4


User provided reference genes

Program Settings