Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G183100 Glycine max HOM05D001366 ORTHO05D005449 1.5e-53 212.6 107 100.0
Prupe.1G536300 Prunus persica HOM05D001366 ORTHO05D005449 1.2e-52 209.5 107 98.1
Glyma.02G216100 Glycine max HOM05D001366 ORTHO05D005449 2.1e-52 208.8 107 98.1
Phvul.008G183300 Phaseolus vulgaris HOM05D001366 ORTHO05D005449 2.1e-52 208.8 107 98.1
FAN04G2369 Fragaria x ananassa HOM05D001366 ORTHO05D005449 4.7e-52 207.6 107 96.3
LjContig00408g0006754 Lotus japonicus HOM05D001366 ORTHO05D005449 4.7e-52 207.6 107 97.2
FvH4_5g34180 Fragaria vesca HOM05D001366 ORTHO05D005449 6.2e-52 207.2 107 97.2
FAN18G2982 Fragaria x ananassa HOM05D001366 ORTHO05D005449 6.2e-52 207.2 107 97.2
Manes.18G057000 Manihot esculenta HOM05D001366 ORTHO05D005449 2.3e-51 205.3 107 96.3
Medtr7g005540 Medicago truncatula HOM05D001366 ORTHO05D005449 2.3e-51 205.3 107 95.3
GSVIVG01009213001 Vitis vinifera HOM05D001366 ORTHO05D005449 4.0e-51 204.5 107 95.3
Ciclev10002917m.g Citrus clementina HOM05D001366 ORTHO05D005449 5.2e-51 204.1 107 95.3
Lalb_Chr23g0269931 Lupinus albus HOM05D001366 ORTHO05D005449 8.9e-51 203.4 107 95.3
DCAR_006444 Daucus carota HOM05D001366 ORTHO05D005449 1.2e-50 203.0 107 94.4
Potri.005G151700 Populus trichocarpa HOM05D001366 ORTHO05D005449 1.5e-50 202.6 107 93.5
RcHm_v2.0_Chr7g0233761 Rosa chinensis HOM05D001366 ORTHO05D005449 1.5e-50 202.6 107 94.4
Sed0015347 Sechium edule HOM05D001366 ORTHO05D005449 1.5e-50 202.6 107 93.5
Lalb_Chr11g0064851 Lupinus albus HOM05D001366 ORTHO05D005449 2.0e-50 202.2 107 94.4
TPR.G15622 Trifolium pratense HOM05D001366 ORTHO05D005449 2.0e-50 202.2 105 96.2
CANSAT25G2801 Cannabis sativa HOM05D001366 ORTHO05D005449 3.4e-50 201.4 107 93.5
MBI19_g32700_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D005449 3.4e-50 201.4 107 94.4
Psat2g064960 Pisum sativum HOM05D001366 ORTHO05D005449 3.4e-50 201.4 107 94.4
Cpa.g.sc21.43 Carica papaya HOM05D001366 ORTHO05D005449 4.4e-50 201.1 107 93.5
CiPaw.07G162800 Carya illinoinensis HOM05D001366 ORTHO05D005449 4.4e-50 201.1 107 93.5
COL.COLO4_35286 Corchorus olitorius HOM05D001366 ORTHO05D005449 4.4e-50 201.1 107 93.5
CsaV3_2G033350 Cucumis sativus L. HOM05D001366 ORTHO05D005449 4.4e-50 201.1 107 92.5
PSO013G0324 Papaver somniferum HOM05D001366 ORTHO05D005449 5.8e-50 200.7 107 92.5
Rhsim07G0213700 Rhododendron simsii HOM05D001366 ORTHO05D005449 5.8e-50 200.7 107 93.5
Atru.chr11.619 Acer truncatum HOM05D001366 ORTHO05D005449 7.5e-50 200.3 107 92.5
Aa31LG4G9540 Aethionema arabicum HOM05D001366 ORTHO05D005449 7.5e-50 200.3 107 93.5
arahy.Tifrunner.gnm1.ann1.8785AP Arachis hypogaea HOM05D001366 ORTHO05D005449 7.5e-50 200.3 107 93.5
arahy.Tifrunner.gnm1.ann1.CRNC3Y Arachis hypogaea HOM05D001366 ORTHO05D005449 7.5e-50 200.3 107 93.5
Carub.0007s1663 Capsella rubella HOM05D001366 ORTHO05D005449 7.5e-50 200.3 107 93.5
Gohir.D05G220900 Gossypium hirsutum HOM05D001366 ORTHO05D005449 7.5e-50 200.3 107 93.5
Gorai.009G228000 Gossypium raimondii HOM05D001366 ORTHO05D005449 7.5e-50 200.3 107 93.5
Lalb_Chr08g0242611 Lupinus albus HOM05D001366 ORTHO05D005449 7.5e-50 200.3 107 93.5
Nn1g05642 Nelumbo nucifera HOM05D001366 ORTHO05D005449 7.5e-50 200.3 107 93.5
PSO832G3977 Papaver somniferum HOM05D001366 ORTHO05D005449 7.5e-50 200.3 107 91.6
PGR042G3224 Punica granatum HOM05D001366 ORTHO05D005449 7.5e-50 200.3 107 92.5
CARHR231830 Cardamine hirsuta HOM05D001366 ORTHO05D005449 9.9e-50 199.9 107 92.5
MELO3C008106.2 Cucumis melo HOM05D001366 ORTHO05D005449 1.3e-49 199.5 107 91.6
CsaV3_2G033370 Cucumis sativus L. HOM05D001366 ORTHO05D005449 1.3e-49 199.5 107 91.6
TWI09G0135 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 1.3e-49 199.5 107 92.5
Atru.chr13.973 Acer truncatum HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 91.6
Aqoxy2G03242 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 91.6
AL7G28780 Arabidopsis lyrata HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 92.5
AT4G24440 Arabidopsis thaliana HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 92.5
arahy.Tifrunner.gnm1.ann1.HU70H8 Arachis hypogaea HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 92.5
ClCG11G014700 Citrullus lanatus HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 92.5
Thhalv10026637m.g Eutrema salsugineum HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 92.5
Hma1.2p1_0125F.1_g058680 Hydrangea macrophylla HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 92.5
PSO761G0276 Papaver somniferum HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 91.6
Sp7g22400 Schrenkiella parvula HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 92.5
Sed0016266 Sechium edule HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 91.6
BcaC06g32884 Brassica carinata HOM05D001366 ORTHO05D005449 2.2e-49 198.7 107 92.5
BolC7t45851H Brassica oleracea HOM05D001366 ORTHO05D005449 2.2e-49 198.7 107 92.5
Aqoxy6G00666 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 2.9e-49 198.4 107 90.7
Eucgr.F00436 Eucalyptus grandis HOM05D001366 ORTHO05D005449 2.9e-49 198.4 107 92.5
Gorai.009G278800 Gossypium raimondii HOM05D001366 ORTHO05D005449 2.9e-49 198.4 107 92.5
Peaxi162Scf00160g00913 Petunia axillaris HOM05D001366 ORTHO05D005449 2.9e-49 198.4 107 92.5
THA.LOC104815469 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 2.9e-49 198.4 107 92.5
arahy.Tifrunner.gnm1.ann1.T41BVH Arachis hypogaea HOM05D001366 ORTHO05D005449 3.7e-49 198.0 107 92.5
CiPaw.08G057200 Carya illinoinensis HOM05D001366 ORTHO05D005449 3.7e-49 198.0 107 91.6
Thecc.08G074000 Theobroma cacao HOM05D001366 ORTHO05D005449 3.7e-49 198.0 107 91.6
Actinidia29656 Actinidia chinensis HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 91.6
EL10Ac8g20405 Beta vulgaris HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 91.6
BcaC09g50868 Brassica carinata HOM05D001366 ORTHO05D003220 4.9e-49 197.6 106 91.5
BcaNung05637 Brassica carinata HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 91.6
A03p55290 Brassica napus HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 91.6
C01p19760 Brassica napus HOM05D001366 ORTHO05D003220 4.9e-49 197.6 106 91.5
C07p53590 Brassica napus HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 91.6
BolC1t01904H Brassica oleracea HOM05D001366 ORTHO05D003220 4.9e-49 197.6 106 91.5
BraA03t14588Z Brassica rapa HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 91.6
TWI73G1055 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 91.6
EL10Ac9g20840 Beta vulgaris HOM05D001366 ORTHO05D005449 6.4e-49 197.2 107 92.5
PSO700G0345 Papaver somniferum HOM05D001366 ORTHO05D005449 6.4e-49 197.2 107 90.7
A08p21460 Brassica napus HOM05D001366 ORTHO05D005449 8.3e-49 196.8 107 91.6
BolC8t48576H Brassica oleracea HOM05D001366 ORTHO05D005449 8.3e-49 196.8 107 91.6
BraA08t34095Z Brassica rapa HOM05D001366 ORTHO05D005449 8.3e-49 196.8 107 91.6
Gohir.A05G264200 Gossypium hirsutum HOM05D001366 ORTHO05D005449 1.1e-48 196.4 107 91.6
Gohir.D05G266700 Gossypium hirsutum HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 91.6
A01p15810 Brassica napus HOM05D001366 ORTHO05D003220 1.9e-48 195.7 105 91.4
BraA01t01516Z Brassica rapa HOM05D001366 ORTHO05D003220 1.9e-48 195.7 105 91.4
CAN.G1104.8 Capsicum annuum HOM05D001366 ORTHO05D005449 1.9e-48 195.7 107 91.6
Nitab4.5_0000885g0060 Nicotiana tabacum HOM05D001366 ORTHO05D005449 1.9e-48 195.7 107 90.7
Solyc12g088030.2 Solanum lycopersicum HOM05D001366 ORTHO05D005449 1.9e-48 195.7 107 91.6
Sopen12g030060 Solanum pennellii HOM05D001366 ORTHO05D005449 1.9e-48 195.7 107 91.6
Cc10_g08370 Coffea canephora HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 91.6
Hund07854 Selenicereus undatus HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 91.6
CSS0026904 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 3.2e-48 194.9 107 90.7
THA.LOC104799853 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 3.2e-48 194.9 107 90.7
ATR0691G175 Amborella trichopoda HOM05D001366 ORTHO05D005449 4.1e-48 194.5 107 90.7
PGSC0003DMG400002052 Solanum tuberosum HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 90.7
TAR625G0060 Trochodendron aralioides HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 90.7
CSS0031876 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 9.2e-48 193.4 107 89.7
Haze_22489 Corylus avellana HOM05D001366 ORTHO05D005449 1.2e-47 193.0 107 89.7
HPP92_010288 Vanilla planifolia HOM05D001366 ORTHO05D005449 1.2e-47 193.0 106 88.7
HanXRQChr10g0277741 Helianthus annuus HOM05D001366 ORTHO05D005449 1.6e-47 192.6 107 88.8
Nitab4.5_0000354g0080 Nicotiana tabacum HOM05D001366 ORTHO05D005449 1.6e-47 192.6 107 89.7
TPR.G38776 Trifolium pratense HOM05D001366 ORTHO05D005449 1.6e-47 192.6 107 89.7
Gohir.A05G216500 Gossypium hirsutum HOM05D001366 ORTHO05D005449 2.1e-47 192.2 117 85.5
Lsat_1_v5_gn_6_107360 Lactuca sativa HOM05D001366 ORTHO05D005449 2.1e-47 192.2 106 87.7
Rhsim02G0071900 Rhododendron simsii HOM05D001366 ORTHO05D005449 2.1e-47 192.2 123 82.1
Duzib041G0019 Durio zibethinus HOM05D001366 ORTHO05D005449 3.5e-47 191.4 107 87.9
Medtr5g066740 Medicago truncatula HOM05D001366 ORTHO05D005449 4.6e-47 191.0 107 86.9
ECA240G3991 Erigeron canadensis HOM05D001366 ORTHO05D005449 6.0e-47 190.7 107 88.8
MSTRG.5323 Avicennia marina HOM05D001366 ORTHO05D005449 1.0e-46 189.9 107 86.0
Ah.01g003970 Amaranthus hybridus HOM05D001366 ORTHO05D005449 1.3e-46 189.5 107 87.9
Os05g0107700 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 1.7e-46 189.1 107 87.9
HanXRQChr03g0063191 Helianthus annuus HOM05D001366 ORTHO05D005449 2.3e-46 188.7 107 87.9
Oeu040884.1 Olea europaea HOM05D001366 ORTHO05D005449 2.3e-46 188.7 107 88.8
Zm00001eb356100 Zea mays HOM05D001366 ORTHO05D005449 2.3e-46 188.7 107 86.9
SalBow3G1925 Salvia bowleyana HOM05D001366 ORTHO05D005449 8.6e-46 186.8 107 86.9
TWI56G0439 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 8.6e-46 186.8 107 86.0
Sabra05G0119200 Salix brachista HOM05D001366 ORTHO05D005449 2.5e-45 185.3 133 74.4
SalBow6G3832 Salvia bowleyana HOM05D001366 ORTHO05D005449 3.3e-45 184.9 107 86.0
SalBow6G5818 Salvia bowleyana HOM05D001366 ORTHO05D005449 3.3e-45 184.9 107 86.0
Migut.N01147 Erythranthe guttata HOM05D001366 ORTHO05D005449 5.6e-45 184.1 107 85.0
Zm00001eb139900 Zea mays HOM05D001366 ORTHO05D005449 5.6e-45 184.1 104 86.5
MSTRG.27758 Avicennia marina HOM05D001366 ORTHO05D005449 7.3e-45 183.7 107 84.1
SGA_v2.0_scaffold337G49194 Striga asiatica HOM05D001366 ORTHO05D005449 1.6e-44 182.6 107 84.1
unitig_22.g6842 Utricularia gibba HOM05D001366 ORTHO05D005449 1.1e-43 179.9 107 81.3
SGA_v2.0_scaffold219G42523 Striga asiatica HOM05D001366 ORTHO05D005449 2.4e-43 178.7 105 82.9
MD08G1203900 Malus domestica HOM05D001366 ORTHO05D005449 4.0e-43 177.9 94 93.6
Os01g0970500 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 4.0e-43 177.9 104 81.7
MSTRG.16686 Avicennia marina HOM05D001366 ORTHO05D005449 5.2e-43 177.6 106 79.2
Psat0s2399g0160 Pisum sativum HOM05D001366 ORTHO05D005449 4.4e-42 174.5 104 79.8
AUR62017035 Chenopodium quinoa HOM05D001366 ORTHO05D005449 7.6e-42 173.7 94 92.6
SHI29728 Sapria himalayana HOM05D001366 ORTHO05D005449 9.9e-42 173.3 107 83.2
Actinidia19254 Actinidia chinensis HOM05D001366 ORTHO05D005449 4.1e-40 167.9 107 75.7
ECA246G1742 Erigeron canadensis HOM05D001366 ORTHO05D005449 1.6e-39 166.0 98 81.6
Oeu038169.3 Olea europaea HOM05D001366 ORTHO05D005449 7.8e-39 163.7 165 58.2
TAR381G0322 Trochodendron aralioides HOM05D001366 ORTHO05D005449 5.1e-38 161.0 107 75.7
Lsat_1_v5_gn_7_43741 Lactuca sativa HOM05D001366 ORTHO05D005449 4.7e-36 154.5 83 90.4
Duzib116G0949 Durio zibethinus HOM05D001366 ORTHO05D005449 4.0e-35 151.4 107 74.8
Mapoly0012s0108 Marchantia polymorpha HOM05D001366 ORTHO05D005449 5.2e-35 151.0 107 63.6
Pp3c15_13540 Physcomitrium patens HOM05D001366 ORTHO05D005449 5.2e-35 151.0 107 65.4
Pp3c9_10830 Physcomitrium patens HOM05D001366 ORTHO05D005449 9.0e-35 150.2 107 65.4
AagrBONN_evm.TU.Sc2ySwM_228.5579 Anthoceros agrestis HOM05D001366 ORTHO05D005449 1.7e-33 146.0 107 60.7
AagrBONN_evm.TU.Sc2ySwM_228.3950 Anthoceros agrestis HOM05D001366 ORTHO05D005449 4.9e-33 144.4 107 60.7
SMO169G0007 Selaginella moellendorffii HOM05D001366 ORTHO05D005449 3.5e-31 138.3 106 58.5
Actinidia19617 Actinidia chinensis HOM05D001366 ORTHO05D005449 3.0e-30 135.2 71 93.0
Migut.B00439 Erythranthe guttata HOM05D001366 ORTHO05D005449 9.0e-27 123.6 107 59.8
RcHm_v2.0_Chr5g0012851 Rosa chinensis HOM05D001366 ORTHO05D005449 9.0e-27 123.6 107 58.9
Ca_08744_v3 Cicer arietinum L. HOM05D001366 ORTHO05D005449 1.9e-24 115.9 60 100.0
VMungo0647G1399 Vigna mungo HOM05D001366 ORTHO05D005449 1.9e-24 115.9 60 100.0
unitig_8.g3420 Utricularia gibba HOM05D001366 ORTHO05D005449 4.2e-24 114.8 93 62.4
Dinv42590 Davidia involucrata HOM05D001366 ORTHO05D005449 7.1e-24 114.0 69 85.5
vmacro04625 Vaccinium macrocarpon HOM05D001366 ORTHO05D005449 1.2e-23 113.2 60 96.7
Lsat_1_v5_gn_4_60280 Lactuca sativa HOM05D001366 ORTHO05D005449 3.5e-23 111.7 66 83.3
QL09p018667 Quercus lobata HOM05D001366 ORTHO05D005449 1.8e-22 109.4 60 93.3
AagrBONN_evm.TU.Sc2ySwM_368.1269 Anthoceros agrestis HOM05D001366 ORTHO05D005449 8.7e-22 107.1 105 46.7
Haze_27711 Corylus avellana HOM05D001366 ORTHO05D005449 5.6e-21 104.4 100 49.0
C06p07570 Brassica napus HOM05D001366 ORTHO05D005449 3.4e-18 95.1 107 57.0
BolC6t35845H Brassica oleracea HOM05D001366 ORTHO05D005449 3.4e-18 95.1 107 57.0
BcaC08g43388 Brassica carinata HOM05D001366 ORTHO05D005449 4.5e-18 94.7 84 59.5
Mapoly0067s0078 Marchantia polymorpha HOM05D001366 ORTHO05D005449 1.4e-16 89.7 98 45.9
AUR62014838 Chenopodium quinoa HOM05D001366 ORTHO05D005449 5.5e-16 87.8 62 74.2
HanXRQChr05g0143271 Helianthus annuus HOM05D001366 ORTHO05D005449 4.6e-15 84.7 51 82.4
Cre10.g424150 Chlamydomonas reinhardtii HOM05D001366 ORTHO05D005449 7.4e-13 77.4 100 36.0
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 1.4e-11 73.2 47 78.7
PRCOL_00001724 Prasinoderma coloniale HOM05D001366 ORTHO05D005449 6.9e-11 70.9 92 35.9
HanXRQChr11g0353851 Helianthus annuus HOM05D001366 ORTHO05D005449 4.9e-09 64.7 36 86.1
TAR374G0947 Trochodendron aralioides HOM05D000025 ORTHO05D000040 4.2e-08 61.6 34 76.5
Lsat_1_v5_gn_8_45161 Lactuca sativa HOM05D001675 ORTHO05D001808 4.6e-07 58.2 38 78.9


User provided reference genes

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