Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G143700 Glycine max HOM05D001880 ORTHO05D004730 5.6e-159 564.3 302 100.0
Glyma.17G190500 Glycine max HOM05D001880 ORTHO05D004730 5.7e-111 404.8 284 80.6
Phvul.001G061100 Phaseolus vulgaris HOM05D001880 ORTHO05D004730 2.8e-110 402.5 284 78.9
VMungo0647G0420 Vigna mungo HOM05D001880 ORTHO05D004730 1.3e-102 377.1 284 71.1
Ca_12729_v3 Cicer arietinum L. HOM05D001880 ORTHO05D004730 1.7e-99 366.7 317 65.9
Glyma.06G082200 Glycine max HOM05D001880 ORTHO05D004730 4.7e-97 358.6 291 69.1
Glyma.04G080500 Glycine max HOM05D001880 ORTHO05D004730 6.3e-94 348.2 319 61.4
Lalb_Chr23g0269481 Lupinus albus HOM05D001880 ORTHO05D004730 5.4e-93 345.1 274 68.6
Medtr1g026890 Medicago truncatula HOM05D001880 ORTHO05D004730 5.4e-93 345.1 320 63.8
Lj1g0005918 Lotus japonicus HOM05D001880 ORTHO05D004730 7.7e-92 341.3 277 66.1
Psat6g035680 Pisum sativum HOM05D001880 ORTHO05D004730 3.7e-86 322.4 323 61.0
TPR.G20025 Trifolium pratense HOM05D001880 ORTHO05D004730 7.0e-85 318.2 306 59.8
Phvul.009G106600 Phaseolus vulgaris HOM05D001880 ORTHO05D004730 1.0e-83 314.3 316 61.1
arahy.Tifrunner.gnm1.ann1.KUD1W7 Arachis hypogaea HOM05D001880 ORTHO05D004730 1.2e-79 300.8 305 60.7
Actinidia31224 Actinidia chinensis HOM05D001880 ORTHO05D004730 7.5e-79 298.1 309 53.4
arahy.Tifrunner.gnm1.ann1.I11X1M Arachis hypogaea HOM05D001880 ORTHO05D004730 9.8e-79 297.7 322 57.8
CiPaw.08G023900 Carya illinoinensis HOM05D001880 ORTHO05D004730 1.4e-77 293.9 310 53.5
Prupe.1G452100 Prunus persica HOM05D001880 ORTHO05D004730 1.4e-77 293.9 313 52.7
Gorai.009G050900 Gossypium raimondii HOM05D001880 ORTHO05D004730 2.0e-76 290.0 287 55.7
Ciclev10008260m.g Citrus clementina HOM05D001880 ORTHO05D004730 3.5e-76 289.3 294 56.1
Haze_21861 Corylus avellana HOM05D001880 ORTHO05D004730 2.3e-75 286.6 309 57.6
Potri.018G037900 Populus trichocarpa HOM05D001880 ORTHO05D004730 1.1e-74 284.3 290 53.4
CSS0018831 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D004730 1.5e-74 283.9 304 52.0
Gohir.D05G049600 Gossypium hirsutum HOM05D001880 ORTHO05D004730 1.9e-74 283.5 284 55.3
Sabra06G0189200 Salix brachista HOM05D001880 ORTHO05D004730 3.3e-74 282.7 291 53.3
TAR383G0573 Trochodendron aralioides HOM05D001880 ORTHO05D004730 4.3e-74 282.3 311 54.3
Potri.006G241800 Populus trichocarpa HOM05D001880 ORTHO05D004730 5.6e-74 282.0 308 51.9
MD08G1117800 Malus domestica HOM05D001880 ORTHO05D004730 1.2e-73 280.8 298 53.0
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 2.1e-73 280.0 310 51.6
Lj7C706T10 Lonicera japonica HOM05D001880 ORTHO05D004730 2.1e-73 280.0 308 54.9
Gohir.A05G048100 Gossypium hirsutum HOM05D001880 ORTHO05D004730 3.6e-73 279.3 284 54.9
Thecc.09G040300 Theobroma cacao HOM05D001880 ORTHO05D004730 1.0e-72 277.7 291 53.6
MSTRG.25899 Avicennia marina HOM05D001880 ORTHO05D004730 1.8e-72 276.9 302 51.0
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 1.8e-72 276.9 342 52.6
GSVIVG01035666001 Vitis vinifera HOM05D001880 ORTHO05D004730 4.0e-72 275.8 284 53.2
QL12p026586 Quercus lobata HOM05D001880 ORTHO05D004730 5.2e-72 275.4 306 52.9
Dinv14229 Davidia involucrata HOM05D001880 ORTHO05D004730 1.5e-71 273.9 306 52.3
Oeu012185.1 Olea europaea HOM05D001880 ORTHO05D004730 5.8e-71 271.9 287 53.0
Nn5g30497 Nelumbo nucifera HOM05D001880 ORTHO05D004730 1.3e-70 270.8 313 49.2
CANSAT25G1999 Cannabis sativa HOM05D001880 ORTHO05D004730 2.2e-70 270.0 286 53.5
FvH4_2g36050 Fragaria vesca HOM05D001880 ORTHO05D004730 1.4e-69 267.3 291 50.5
TAR626G0413 Trochodendron aralioides HOM05D001880 ORTHO05D004730 1.4e-69 267.3 292 51.7
FAN27G3372 Fragaria x ananassa HOM05D001880 ORTHO05D004730 5.4e-69 265.4 291 50.2
RcHm_v2.0_Chr6g0305801 Rosa chinensis HOM05D001880 ORTHO05D004730 5.4e-69 265.4 278 53.6
Hma1.2p1_0140F.1_g063490 Hydrangea macrophylla HOM05D001880 ORTHO05D004730 1.6e-68 263.8 314 50.6
Gohir.D01G144201 Gossypium hirsutum HOM05D001880 ORTHO05D004730 2.0e-68 263.5 309 50.5
Eucgr.C01584 Eucalyptus grandis HOM05D001880 ORTHO05D004730 3.5e-68 262.7 308 49.0
Gorai.011G131400 Gossypium raimondii HOM05D001880 ORTHO05D004730 3.5e-68 262.7 312 49.4
CAN.G21.30 Capsicum annuum HOM05D001880 ORTHO05D004730 6.0e-68 261.9 280 53.9
Lsat_1_v5_gn_5_33160 Lactuca sativa HOM05D001880 ORTHO05D004730 6.0e-68 261.9 296 52.4
Sc24g0001330 Simmondsia chinensis HOM05D001880 ORTHO05D004730 1.7e-67 260.4 304 50.0
FAN15G1328 Fragaria x ananassa HOM05D001880 ORTHO05D004730 3.0e-67 259.6 295 49.8
Duzib150G1399 Durio zibethinus HOM05D001880 ORTHO05D004730 3.9e-67 259.2 289 51.9
Cpa.g.sc78.77 Carica papaya HOM05D001880 ORTHO05D004730 5.0e-67 258.8 304 51.3
PGR031G0301 Punica granatum HOM05D001880 ORTHO05D004730 5.0e-67 258.8 301 47.8
Ah.16g105290 Amaranthus hybridus HOM05D001880 ORTHO05D004730 6.6e-67 258.5 297 51.5
Gorai.002G178100 Gossypium raimondii HOM05D001880 ORTHO05D004730 8.6e-67 258.1 294 51.4
Migut.A00234 Erythranthe guttata HOM05D001880 ORTHO05D004730 1.5e-66 257.3 296 54.4
DCAR_007706 Daucus carota HOM05D001880 ORTHO05D004730 1.9e-66 256.9 300 50.3
Duzib168G0571 Durio zibethinus HOM05D001880 ORTHO05D004730 3.3e-66 256.1 295 50.2
Gohir.D10G119600 Gossypium hirsutum HOM05D001880 ORTHO05D004730 4.3e-66 255.8 295 51.5
PGSC0003DMG400010836 Solanum tuberosum HOM05D001880 ORTHO05D004730 1.2e-65 254.2 302 48.7
MELO3C011157.2 Cucumis melo HOM05D001880 ORTHO05D004730 2.1e-65 253.4 299 50.5
Sopen08g022160 Solanum pennellii HOM05D001880 ORTHO05D004730 2.8e-65 253.1 310 48.7
Cc08_g09020 Coffea canephora HOM05D001880 ORTHO05D004730 3.6e-65 252.7 305 49.8
CsaV3_2G031070 Cucumis sativus L. HOM05D001880 ORTHO05D004730 8.1e-65 251.5 300 53.3
PSO210G1470 Papaver somniferum HOM05D001880 ORTHO05D004730 8.1e-65 251.5 275 52.4
Solyc08g068310.3 Solanum lycopersicum HOM05D001880 ORTHO05D004730 2.3e-64 250.0 316 47.8
vmacro11077 Vaccinium macrocarpon HOM05D001880 ORTHO05D004730 2.3e-64 250.0 343 45.5
Sed0010239 Sechium edule HOM05D001880 ORTHO05D004730 4.0e-64 249.2 293 49.5
SGA_v2.0_scaffold185G40074 Striga asiatica HOM05D001880 ORTHO05D004730 6.8e-64 248.4 315 46.0
HanXRQChr07g0190061 Helianthus annuus HOM05D001880 ORTHO05D004730 8.9e-64 248.1 285 52.3
Gorai.001G028400 Gossypium raimondii HOM05D001880 ORTHO05D004730 2.6e-63 246.5 278 54.3
SalBow4G1753 Salvia bowleyana HOM05D001880 ORTHO05D004730 3.4e-63 246.1 300 49.0
THA.LOC104803768 Tarenaya hassleriana HOM05D001880 ORTHO05D004730 3.4e-63 246.1 276 49.3
Nitab4.5_0007240g0020 Nicotiana tabacum HOM05D001880 ORTHO05D004730 4.4e-63 245.7 311 46.3
Peaxi162Scf00523g00112 Petunia axillaris HOM05D001880 ORTHO05D004730 5.8e-63 245.4 319 45.8
DCAR_003047 Daucus carota HOM05D001880 ORTHO05D004730 9.8e-63 244.6 323 48.0
Gohir.A07G023700 Gossypium hirsutum HOM05D001880 ORTHO05D004730 1.7e-62 243.8 279 53.8
AL7G19020 Arabidopsis lyrata HOM05D001880 ORTHO05D004730 2.2e-62 243.4 293 46.4
Gohir.D07G027300 Gossypium hirsutum HOM05D001880 ORTHO05D004730 2.2e-62 243.4 278 54.0
Lj8C597T6 Lonicera japonica HOM05D001880 ORTHO05D004730 4.9e-62 242.3 299 49.2
BraA01t00530Z Brassica rapa HOM05D001880 ORTHO05D004730 6.4e-62 241.9 285 46.3
Lj8C602G7 Lonicera japonica HOM05D001880 ORTHO05D004730 6.4e-62 241.9 299 49.2
PSO210G2288 Papaver somniferum HOM05D001880 ORTHO05D004730 6.4e-62 241.9 276 50.4
AUR62023013 Chenopodium quinoa HOM05D001880 ORTHO05D004730 8.3e-62 241.5 299 48.2
Manes.03G063200 Manihot esculenta HOM05D001880 ORTHO05D004730 8.3e-62 241.5 303 47.2
ClCG08G012380 Citrullus lanatus HOM05D001880 ORTHO05D004730 1.1e-61 241.1 306 47.1
AT4G32720 Arabidopsis thaliana HOM05D001880 ORTHO05D004730 1.4e-61 240.7 293 45.7
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 1.9e-61 240.4 295 55.6
A01p05590 Brassica napus HOM05D001880 ORTHO05D004730 2.4e-61 240.0 285 46.3
C01p06170 Brassica napus HOM05D001880 ORTHO05D004730 5.4e-61 238.8 285 46.0
BolC1t00615H Brassica oleracea HOM05D001880 ORTHO05D004730 5.4e-61 238.8 285 46.0
AUR62009326 Chenopodium quinoa HOM05D001880 ORTHO05D004730 7.1e-61 238.4 295 48.8
Nitab4.5_0000052g0190 Nicotiana tabacum HOM05D001880 ORTHO05D004730 1.2e-60 237.7 309 45.0
Carub.0007s0776 Capsella rubella HOM05D001880 ORTHO05D004730 2.7e-60 236.5 293 45.7
Aa31LG2G17280 Aethionema arabicum HOM05D001880 ORTHO05D004730 3.5e-60 236.1 282 46.5
Rhsim02G0181700 Rhododendron simsii HOM05D001880 ORTHO05D004730 6.0e-60 235.3 290 49.3
TWI32G0570 Tripterygium wilfordii HOM05D001880 ORTHO05D004730 7.8e-60 235.0 310 46.5
Hund03438 Selenicereus undatus HOM05D001880 ORTHO05D004730 3.9e-59 232.6 282 50.7
Dinv30257 Davidia involucrata HOM05D001880 ORTHO05D004730 1.1e-58 231.1 286 50.3
EL10Ac2g04069 Beta vulgaris HOM05D001880 ORTHO05D004730 1.5e-58 230.7 316 49.4
PSO782G2488 Papaver somniferum HOM05D001880 ORTHO05D004730 1.9e-58 230.3 273 49.5
CARHR240720 Cardamine hirsuta HOM05D001880 ORTHO05D004730 2.5e-58 229.9 286 44.8
PSO832G4225 Papaver somniferum HOM05D001880 ORTHO05D004730 4.3e-58 229.2 273 49.1
TWI63G1191 Tripterygium wilfordii HOM05D001880 ORTHO05D004730 1.6e-57 227.3 307 46.3
A08p17950 Brassica napus HOM05D001880 ORTHO05D004730 6.2e-57 225.3 288 43.4
BraA08t33746Z Brassica rapa HOM05D001880 ORTHO05D004730 6.2e-57 225.3 288 43.4
CDE05G2503 Ceratophyllum demersum HOM05D001880 ORTHO05D004730 1.4e-56 224.2 299 45.5
HPP92_013605 Vanilla planifolia HOM05D001880 ORTHO05D004730 1.7e-54 217.2 289 46.0
BcaNung06641 Brassica carinata HOM05D001880 ORTHO05D004730 6.4e-54 215.3 286 43.4
C03p87060 Brassica napus HOM05D001880 ORTHO05D000054 6.4e-54 215.3 286 43.4
BolC3t21003H Brassica oleracea HOM05D001880 ORTHO05D004730 6.4e-54 215.3 286 43.4
MBI01_g07170_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D004730 1.4e-53 214.2 264 53.4
Manes.16G069051 Manihot esculenta HOM05D001880 ORTHO05D004730 1.4e-53 214.2 305 43.3
Thhalv10025209m.g Eutrema salsugineum HOM05D001880 ORTHO05D004730 3.2e-53 213.0 286 43.0
Sed0005261 Sechium edule HOM05D001880 ORTHO05D004730 4.1e-53 212.6 281 44.8
BcaB03g12759 Brassica carinata HOM05D001880 ORTHO05D004730 5.4e-53 212.2 289 42.9
Sp7g30490 Schrenkiella parvula HOM05D001880 ORTHO05D004730 9.2e-53 211.5 299 42.1
Os02g0610400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D004730 1.6e-52 210.7 301 46.8
ATR0315G050 Amborella trichopoda HOM05D001880 ORTHO05D004730 3.0e-51 206.5 327 43.7
MBI04_g19165_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D004730 5.1e-51 205.7 377 41.9
SEGI_31507 Sequoiadendron giganteum HOM05D001880 ORTHO05D004730 6.6e-51 205.3 283 42.4
Aqoxy7G01616 Aquilegia oxysepala HOM05D001880 ORTHO05D004730 2.1e-49 200.3 295 43.7
Zm00001eb246770 Zea mays HOM05D001880 ORTHO05D004730 8.1e-49 198.4 305 38.4
Zm00001eb425750 Zea mays HOM05D001880 ORTHO05D004730 3.4e-47 193.0 262 41.2
SHI18622 Sapria himalayana HOM05D001880 ORTHO05D004730 3.9e-43 179.5 315 37.8
CANSAT56G0393 Cannabis sativa HOM05D001880 ORTHO05D004730 2.4e-40 170.2 266 40.6
Duzib235G1154 Durio zibethinus HOM05D001880 ORTHO05D004730 2.4e-40 170.2 288 38.5
BcaC09g52067 Brassica carinata HOM05D001880 ORTHO05D004730 7.6e-39 165.2 279 38.4
CDE05G1114 Ceratophyllum demersum HOM05D001880 ORTHO05D004730 9.9e-39 164.9 267 41.2
Manes.04G129200 Manihot esculenta HOM05D001880 ORTHO05D004730 7.1e-37 158.7 349 35.5
COL.COLO4_18692 Corchorus olitorius HOM05D001880 ORTHO05D004730 1.1e-34 151.4 247 42.1
A07p26390 Brassica napus HOM05D001880 ORTHO05D004730 2.8e-33 146.7 298 36.9
BraA07t30283Z Brassica rapa HOM05D001880 ORTHO05D004730 2.8e-33 146.7 298 36.9
CARHR074610 Cardamine hirsuta HOM05D001880 ORTHO05D004730 4.8e-33 146.0 283 36.4
Atru.chr7.2154 Acer truncatum HOM05D001880 ORTHO05D004730 1.1e-32 144.8 197 51.8
AL2G41680 Arabidopsis lyrata HOM05D001880 ORTHO05D004730 1.8e-32 144.1 269 38.3
BcaC08g45275 Brassica carinata HOM05D001880 ORTHO05D004730 2.4e-32 143.7 298 38.6
BolC6t38048H Brassica oleracea HOM05D001880 ORTHO05D004730 2.4e-32 143.7 294 37.4
unitig_747.g21869 Utricularia gibba HOM05D001880 ORTHO05D004730 2.4e-32 143.7 234 38.0
AT1G79880 Arabidopsis thaliana HOM05D001880 ORTHO05D004730 3.1e-32 143.3 272 35.3
BcaNung07152 Brassica carinata HOM05D001880 ORTHO05D004730 9.0e-32 141.7 291 36.8
C06p28780 Brassica napus HOM05D001880 ORTHO05D004730 9.0e-32 141.7 291 36.8
Thhalv10018639m.g Eutrema salsugineum HOM05D001880 ORTHO05D004730 2.6e-31 140.2 271 37.3
Sp5g35890 Schrenkiella parvula HOM05D001880 ORTHO05D004730 7.6e-31 138.7 270 35.9
Pp3c21_14880 Physcomitrium patens HOM05D001880 ORTHO05D004730 1.7e-30 137.5 283 31.4
Actinidia13311 Actinidia chinensis HOM05D001880 ORTHO05D004730 1.9e-26 124.0 207 42.5
AagrBONN_evm.TU.Sc2ySwM_228.5048 Anthoceros agrestis HOM05D001880 ORTHO05D004730 1.9e-26 124.0 280 37.9
BraA01t03248Z Brassica rapa HOM05D001880 ORTHO05D004730 1.6e-25 120.9 106 55.7
Atru.chr7.2155 Acer truncatum HOM05D001880 ORTHO05D004730 8.1e-25 118.6 86 65.1
MD15G1097100 Malus domestica HOM05D001880 ORTHO05D004730 1.4e-24 117.9 75 76.0
SMO343G0026 Selaginella moellendorffii HOM05D001880 ORTHO05D004730 5.3e-24 115.9 277 31.8
Aa31LG4G170 Aethionema arabicum HOM05D001880 ORTHO05D004730 3.4e-23 113.2 275 32.4
A10p26590 Brassica napus HOM05D001880 ORTHO05D004730 3.8e-22 109.8 94 54.3
Mapoly0005s0125 Marchantia polymorpha HOM05D001880 ORTHO05D004730 9.3e-21 105.1 280 33.2
COL.COLO4_30423 Corchorus olitorius HOM05D001880 ORTHO05D004730 3.5e-20 103.2 80 61.2
CAN.G118.14 Capsicum annuum HOM05D001880 ORTHO05D004730 4.6e-20 102.8 105 50.5
BraA10t44716Z Brassica rapa HOM05D001880 ORTHO05D004730 1.0e-19 101.7 78 59.0
SMO367G0348 Selaginella moellendorffii HOM05D001880 ORTHO05D004730 2.8e-17 93.6 260 30.8
vmacro05846 Vaccinium macrocarpon HOM05D001880 ORTHO05D004730 1.5e-15 87.8 239 31.0
MD15G1097300 Malus domestica HOM05D001880 ORTHO05D004730 2.0e-15 87.4 60 70.0
GSVIVG01035689001 Vitis vinifera HOM05D001880 ORTHO05D004730 4.6e-12 76.3 51 66.7
CBR_g39611 Chara braunii HOM05D001880 ORTHO05D004730 3.9e-11 73.2 106 40.6
Zm00001eb223740 Zea mays HOM05D001870 ORTHO05D001797 1.5e-10 71.2 52 59.6
CBR_g34646 Chara braunii HOM05D001880 ORTHO05D004730 1.9e-10 70.9 100 34.0
Rhsim03G0009800 Rhododendron simsii HOM05D008239 ORTHO05D009800 1.1e-08 65.1 93 44.1
CBR_g39614 Chara braunii HOM05D001880 ORTHO05D004730 6.5e-06 55.8 73 41.1


User provided reference genes

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