Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G106300 Glycine max HOM05D006688 ORTHO05D008550 1.8e-223 778.9 375 100.0
Glyma.17G053100 Glycine max HOM05D006688 ORTHO05D008550 3.6e-216 754.6 373 95.4
Phvul.003G134700 Phaseolus vulgaris HOM05D006688 ORTHO05D008550 2.7e-203 711.8 371 91.4
VMungo1215G1360 Vigna mungo HOM05D006688 ORTHO05D008550 5.1e-202 707.6 371 91.9
TPR.G9451 Trifolium pratense HOM05D006688 ORTHO05D008550 1.3e-186 656.4 381 81.6
Lj4g0022709 Lotus japonicus HOM05D006688 ORTHO05D008550 1.9e-185 652.5 375 82.4
Medtr4g125950 Medicago truncatula HOM05D006688 ORTHO05D008550 4.1e-183 644.8 375 81.9
arahy.Tifrunner.gnm1.ann1.UP5FVB Arachis hypogaea HOM05D006688 ORTHO05D008550 5.1e-178 627.9 376 79.8
arahy.Tifrunner.gnm1.ann1.XSA7KG Arachis hypogaea HOM05D006688 ORTHO05D008550 6.3e-176 620.9 380 78.7
arahy.Tifrunner.gnm1.ann1.LNAK8N Arachis hypogaea HOM05D006688 ORTHO05D008550 2.2e-173 612.5 365 80.5
Ca_21292_v3 Cicer arietinum L. HOM05D006688 ORTHO05D008550 7.4e-169 597.4 379 76.5
Lalb_Chr20g0118781 Lupinus albus HOM05D006688 ORTHO05D008550 4.5e-166 588.2 375 73.9
Thecc.09G085200 Theobroma cacao HOM05D006688 ORTHO05D008550 4.2e-164 581.6 376 73.1
Haze_25940 Corylus avellana HOM05D006688 ORTHO05D008550 4.7e-163 578.2 376 72.3
CiPaw.03G212300 Carya illinoinensis HOM05D006688 ORTHO05D008550 1.4e-162 576.6 377 71.6
COL.COLO4_18173 Corchorus olitorius HOM05D006688 ORTHO05D008550 3.0e-162 575.5 376 72.9
Gorai.010G084500 Gossypium raimondii HOM05D006688 ORTHO05D008550 3.0e-162 575.5 376 71.5
Gohir.D06G072500 Gossypium hirsutum HOM05D006688 ORTHO05D008550 1.1e-161 573.5 376 71.3
Gohir.A06G073600 Gossypium hirsutum HOM05D006688 ORTHO05D008550 2.6e-161 572.4 376 71.3
MD02G1082800 Malus domestica HOM05D006688 ORTHO05D008550 9.7e-161 570.5 379 69.4
QL02p062093 Quercus lobata HOM05D006688 ORTHO05D008550 6.3e-160 567.8 400 69.2
FAN26G0248 Fragaria x ananassa HOM05D006688 ORTHO05D008550 2.4e-159 565.8 378 70.9
FvH4_1g07921 Fragaria vesca HOM05D006688 ORTHO05D008550 1.2e-158 563.5 375 71.2
Dinv42341 Davidia involucrata HOM05D006688 ORTHO05D008550 2.6e-158 562.4 371 72.2
Manes.03G036200 Manihot esculenta HOM05D006688 ORTHO05D008550 4.5e-158 561.6 375 71.7
FAN28G0979 Fragaria x ananassa HOM05D006688 ORTHO05D008550 5.9e-158 561.2 378 70.4
RcHm_v2.0_Chr2g0093801 Rosa chinensis HOM05D006688 ORTHO05D008550 2.9e-157 558.9 377 71.1
Atru.chr7.1629 Acer truncatum HOM05D006688 ORTHO05D008550 1.1e-156 557.0 375 70.4
FAN19G1103 Fragaria x ananassa HOM05D006688 ORTHO05D008550 4.2e-156 555.1 371 71.2
CSS0016517 Camellia sinensis var. sinensis HOM05D006688 ORTHO05D008550 2.6e-153 545.8 372 69.1
CsaV3_1G040620 Cucumis sativus L. HOM05D006688 ORTHO05D008550 2.6e-153 545.8 372 69.1
TAR636G2732 Trochodendron aralioides HOM05D006688 ORTHO05D008550 1.3e-152 543.5 380 67.4
MELO3C015492.2 Cucumis melo HOM05D006688 ORTHO05D008550 9.1e-151 537.3 372 67.7
Potri.007G001500 Populus trichocarpa HOM05D006688 ORTHO05D008550 1.6e-150 536.6 376 67.0
GSVIVG01015172001 Vitis vinifera HOM05D006688 ORTHO05D008550 4.5e-150 535.0 375 69.1
Duzib150G1545 Durio zibethinus HOM05D006688 ORTHO05D000625 7.7e-150 534.3 345 72.8
Aqoxy7G01159 Aquilegia oxysepala HOM05D006688 ORTHO05D008550 1.9e-148 529.6 374 65.2
Psat7g043880 Pisum sativum HOM05D006688 ORTHO05D008550 9.4e-148 527.3 313 79.6
Cfa003056 Carpinus fangiana HOM05D006688 ORTHO05D000625 1.6e-147 526.6 347 71.2
Sed0022183 Sechium edule HOM05D006688 ORTHO05D008550 2.0e-145 519.6 372 65.6
Rhsim03G0231200 Rhododendron simsii HOM05D006688 ORTHO05D008550 2.6e-145 519.2 368 67.7
PGR004G0903 Punica granatum HOM05D006688 ORTHO05D008550 1.4e-143 513.5 373 63.8
PSO063G5109 Papaver somniferum HOM05D006688 ORTHO05D008550 4.1e-143 511.9 374 63.4
Hma1.2p1_0672F.1_g201000 Hydrangea macrophylla HOM05D006688 ORTHO05D008550 7.0e-143 511.1 370 67.3
Cc06_g11640 Coffea canephora HOM05D006688 ORTHO05D008550 2.0e-142 509.6 372 63.7
Lj7C679G14 Lonicera japonica HOM05D006688 ORTHO05D008550 3.5e-142 508.8 376 66.0
PSO782G0729 Papaver somniferum HOM05D006688 ORTHO05D008550 2.3e-141 506.1 374 62.3
Sabra07G0001100 Salix brachista HOM05D006688 ORTHO05D008550 2.3e-141 506.1 417 59.7
Sc08g0008600 Simmondsia chinensis HOM05D006688 ORTHO05D008550 3.8e-141 505.4 371 64.4
vmacro06303 Vaccinium macrocarpon HOM05D006688 ORTHO05D008550 1.9e-140 503.1 368 66.6
Sopen07g019540 Solanum pennellii HOM05D006688 ORTHO05D008550 3.3e-140 502.3 373 64.6
AT2G19430 Arabidopsis thaliana HOM05D006688 ORTHO05D008550 7.2e-140 501.1 371 65.0
ECA232G4161 Erigeron canadensis HOM05D006688 ORTHO05D008550 9.5e-140 500.7 375 62.4
CARHR109870 Cardamine hirsuta HOM05D006688 ORTHO05D008550 1.6e-139 500.0 371 66.0
AL3G48850 Arabidopsis lyrata HOM05D006688 ORTHO05D008550 2.8e-139 499.2 371 65.5
Carub.0003s3371 Capsella rubella HOM05D006688 ORTHO05D008550 8.0e-139 497.7 371 65.0
Nitab4.5_0001519g0100 Nicotiana tabacum HOM05D006688 ORTHO05D008550 1.0e-138 497.3 372 64.2
EL10Ac8g19177 Beta vulgaris HOM05D006688 ORTHO05D008550 1.8e-138 496.5 379 63.1
Thhalv10022744m.g Eutrema salsugineum HOM05D006688 ORTHO05D008550 3.0e-138 495.7 371 65.0
BraA07t27924Z Brassica rapa HOM05D006688 ORTHO05D008550 4.4e-137 491.9 370 64.3
BcaC06g36575 Brassica carinata HOM05D006688 ORTHO05D008550 1.3e-136 490.3 370 64.1
C07p02720 Brassica napus HOM05D006688 ORTHO05D008550 3.7e-136 488.8 370 63.8
BolC7t40672H Brassica oleracea HOM05D006688 ORTHO05D008550 4.9e-136 488.4 370 63.8
Ah.09g228060 Amaranthus hybridus HOM05D006688 ORTHO05D008550 1.8e-135 486.5 383 60.8
ClCG03G015420 Citrullus lanatus HOM05D006688 ORTHO05D008550 1.8e-135 486.5 350 65.1
MSTRG.10542 Avicennia marina HOM05D006688 ORTHO05D008550 2.4e-135 486.1 371 63.6
A07p01330 Brassica napus HOM05D006688 ORTHO05D008550 3.1e-135 485.7 370 64.1
Hund06662 Selenicereus undatus HOM05D006688 ORTHO05D008550 5.9e-134 481.5 380 61.6
AUR62029033 Chenopodium quinoa HOM05D006688 ORTHO05D008550 1.0e-133 480.7 378 62.2
Aa31LG8G16440 Aethionema arabicum HOM05D006688 ORTHO05D008550 5.0e-133 478.4 370 62.4
MBI04_g35655_MAGBIO Magnolia biondii HOM05D006688 ORTHO05D008550 8.6e-133 477.6 374 61.8
FAN23G3127 Fragaria x ananassa HOM05D006688 ORTHO05D008550 1.9e-132 476.5 378 63.8
TWI32G0460 Tripterygium wilfordii HOM05D006688 ORTHO05D008550 3.3e-132 475.7 384 62.2
Migut.L01521 Erythranthe guttata HOM05D006688 ORTHO05D008550 7.3e-132 474.6 372 62.6
Prupe.7G205900 Prunus persica HOM05D006688 ORTHO05D008550 7.3e-132 474.6 295 71.9
BcaB03g16729 Brassica carinata HOM05D006688 ORTHO05D008550 2.8e-131 472.6 369 61.5
Nitab4.5_0003606g0020 Nicotiana tabacum HOM05D006688 ORTHO05D008550 4.7e-131 471.9 364 62.6
Sp3g32810 Schrenkiella parvula HOM05D006688 ORTHO05D008550 4.7e-131 471.9 371 62.5
DCAR_010507 Daucus carota HOM05D006688 ORTHO05D008550 4.0e-130 468.8 370 60.3
FAN26G2887 Fragaria x ananassa HOM05D006688 ORTHO05D008550 4.0e-130 468.8 296 71.6
Peaxi162Scf00494g00088 Petunia axillaris HOM05D006688 ORTHO05D008550 4.0e-130 468.8 371 61.5
SalBow1G2294 Salvia bowleyana HOM05D006688 ORTHO05D008550 1.6e-126 456.8 402 58.0
MBI04_g12191_MAGBIO Magnolia biondii HOM05D006688 ORTHO05D008550 2.7e-126 456.1 350 62.0
Eucgr.C03417 Eucalyptus grandis HOM05D006688 ORTHO05D008550 3.5e-126 455.7 375 60.5
Oeu000312.2 Olea europaea HOM05D006688 ORTHO05D008550 1.7e-125 453.4 411 54.7
Nn8g38791 Nelumbo nucifera HOM05D006688 ORTHO05D008550 3.0e-125 452.6 381 59.3
Lsat_1_v5_gn_5_143161 Lactuca sativa HOM05D006688 ORTHO05D008550 1.6e-123 446.8 372 56.2
THA.LOC104814631 Tarenaya hassleriana HOM05D006688 ORTHO05D008550 3.6e-123 445.7 371 59.6
SGA_v2.0_scaffold23G10037 Striga asiatica HOM05D006688 ORTHO05D008550 1.5e-121 440.3 407 55.5
unitig_578.g16412 Utricularia gibba HOM05D006688 ORTHO05D008550 3.4e-121 439.1 372 57.3
MD15G1210900 Malus domestica HOM05D006688 ORTHO05D008550 1.2e-113 414.1 396 53.5
HPP92_007651 Vanilla planifolia HOM05D006688 ORTHO05D008550 4.1e-111 405.6 453 46.1
HanXRQChr10g0319491 Helianthus annuus HOM05D006688 ORTHO05D008550 3.5e-110 402.5 384 53.4
AUR62033933 Chenopodium quinoa HOM05D006688 ORTHO05D008550 1.0e-109 401.0 404 51.7
CDE04G2495 Ceratophyllum demersum HOM05D006688 ORTHO05D008550 1.2e-107 394.0 345 55.4
ATR0789G107 Amborella trichopoda HOM05D006688 ORTHO05D008550 4.9e-104 382.1 355 54.6
Zm00001eb310980 Zea mays HOM05D006688 ORTHO05D008550 6.4e-104 381.7 369 50.4
Actinidia38457 Actinidia chinensis HOM05D006688 ORTHO05D008550 4.2e-103 379.0 368 54.1
CANSAT56G4018 Cannabis sativa HOM05D006688 ORTHO05D008550 4.8e-83 312.4 220 67.3
Mapoly0100s0025 Marchantia polymorpha HOM05D006688 ORTHO05D008550 8.1e-83 311.6 380 42.6
Ciclev10009613m.g Citrus clementina HOM05D006688 ORTHO05D008550 3.9e-77 292.7 185 71.9
Os09g0363600 Oryza sativa ssp. japonica HOM05D006688 ORTHO05D008550 4.3e-68 262.7 272 49.6
Lj7A540G53 Lonicera japonica HOM05D006688 ORTHO05D008550 7.2e-55 218.8 176 61.9
MCO14G146 Micromonas commoda HOM05D006688 ORTHO05D008550 1.5e-49 201.1 382 33.8
Ciclev10009794m.g Citrus clementina HOM05D006688 ORTHO05D008550 1.0e-48 198.4 154 62.3
Cpa.g.sc28.142 Carica papaya HOM05D006688 ORTHO05D008550 4.2e-47 193.0 161 59.0
Cpa.g.sc28.145 Carica papaya HOM05D006688 ORTHO05D008550 6.1e-46 189.1 127 71.7
arahy.Tifrunner.gnm1.ann1.B17F7K Arachis hypogaea HOM05D006688 ORTHO05D008550 1.8e-29 134.4 68 83.8
arahy.Tifrunner.gnm1.ann1.LK4K8I Arachis hypogaea HOM05D006688 ORTHO05D008550 2.3e-29 134.0 69 82.6
Solyc07g040780.4 Solanum lycopersicum HOM05D006688 ORTHO05D008550 1.5e-28 131.3 142 47.2
SEGI_08677 Sequoiadendron giganteum HOM05D006688 ORTHO05D008550 1.7e-24 117.9 131 47.3
Cre03.g180200 Chlamydomonas reinhardtii HOM05D006688 ORTHO05D008550 1.1e-23 115.2 421 26.6
Duzib168G0254 Durio zibethinus HOM05D006688 ORTHO05D008550 3.6e-22 110.2 70 72.9
Thhalv10023917m.g Eutrema salsugineum HOM05D006688 ORTHO05D008550 8.3e-19 99.0 117 46.2
SEGI_12408 Sequoiadendron giganteum HOM05D006688 ORTHO05D008550 4.6e-17 93.2 95 44.2
COL.COLO4_27080 Corchorus olitorius HOM05D006688 ORTHO05D008550 1.4e-13 81.6 67 62.7
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 5.4e-10 69.7 172 27.3
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 7.8e-09 65.9 157 26.1
BcaB08g35553 Brassica carinata HOM05D001335 ORTHO05D001184 1.3e-08 65.1 227 28.6
Glyma.02G198601 Glycine max HOM05D006688 ORTHO05D008550 8.6e-08 62.4 33 84.8
BcaB07g31609 Brassica carinata HOM05D006688 ORTHO05D008550 1.5e-07 61.6 122 37.7
VMungo0720G2087 Vigna mungo HOM05D000836 ORTHO05D000709 1.5e-07 61.6 218 22.0
AL8G26310 Arabidopsis lyrata HOM05D001335 ORTHO05D001184 2.5e-07 60.8 161 31.7
AT5G51980 Arabidopsis thaliana HOM05D001335 ORTHO05D001184 2.5e-07 60.8 164 31.7
CARHR264920 Cardamine hirsuta HOM05D001335 ORTHO05D001184 4.3e-07 60.1 161 31.1
Thhalv10013582m.g Eutrema salsugineum HOM05D001335 ORTHO05D001184 4.3e-07 60.1 159 32.7
BcaC01g06150 Brassica carinata HOM05D001335 ORTHO05D001184 5.6e-07 59.7 104 32.7
BcaC04g20614 Brassica carinata HOM05D001335 ORTHO05D001184 5.6e-07 59.7 174 28.7
C03p18740 Brassica napus HOM05D001335 ORTHO05D001184 5.6e-07 59.7 104 32.7
C09p41490 Brassica napus HOM05D001335 ORTHO05D001184 5.6e-07 59.7 174 28.7
BolC3t14265H Brassica oleracea HOM05D001335 ORTHO05D001184 5.6e-07 59.7 104 32.7
A03p15940 Brassica napus HOM05D001335 ORTHO05D001184 7.3e-07 59.3 161 28.6
BraA03t10884Z Brassica rapa HOM05D001335 ORTHO05D001184 7.3e-07 59.3 161 28.6
Actinidia28377 Actinidia chinensis HOM05D005323 ORTHO05D006820 9.5e-07 58.9 155 26.5
Hund20540 Selenicereus undatus HOM05D003261 ORTHO05D004230 9.5e-07 58.9 162 24.7
A10p09770 Brassica napus HOM05D001335 ORTHO05D001184 1.2e-06 58.5 161 29.2
TPR.G22908 Trifolium pratense HOM05D000464 ORTHO05D006292 1.2e-06 58.5 296 21.6
Carub.0008s1207 Capsella rubella HOM05D001335 ORTHO05D001184 1.6e-06 58.2 111 33.3
Sp6g14230 Schrenkiella parvula HOM05D001335 ORTHO05D001184 1.6e-06 58.2 161 29.2
BcaC09g50768 Brassica carinata HOM05D001335 ORTHO05D001184 2.1e-06 57.8 148 29.7
A01p16750 Brassica napus HOM05D001335 ORTHO05D001184 2.1e-06 57.8 148 29.7
BolC1t02029H Brassica oleracea HOM05D001335 ORTHO05D001184 2.1e-06 57.8 148 29.7
BraA01t01628Z Brassica rapa HOM05D001335 ORTHO05D001184 2.1e-06 57.8 148 29.7
DCAR_009404 Daucus carota HOM05D001335 ORTHO05D001184 2.1e-06 57.8 162 28.4
C01p21050 Brassica napus HOM05D001335 ORTHO05D001184 2.8e-06 57.4 148 29.7
FAN10G1082 Fragaria x ananassa HOM05D001335 ORTHO05D001184 2.8e-06 57.4 169 24.9
Lalb_Chr01g0009081 Lupinus albus HOM05D001335 ORTHO05D001184 2.8e-06 57.4 134 30.6
CBR_g13009 Chara braunii HOM05D006688 ORTHO05D008550 3.6e-06 57.0 51 47.1
Lsat_1_v5_gn_6_115620 Lactuca sativa HOM05D002332 ORTHO05D002509 4.7e-06 56.6 71 35.2
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 4.7e-06 56.6 178 25.3
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 4.7e-06 56.6 76 32.9
SHI00252 Sapria himalayana HOM05D003769 ORTHO05D014021 4.7e-06 56.6 85 29.4
Carub.0007s1554 Capsella rubella HOM05D001335 ORTHO05D001184 6.2e-06 56.2 104 33.7
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 6.2e-06 56.2 74 33.8
Eucgr.E02826 Eucalyptus grandis HOM05D001335 ORTHO05D001184 6.2e-06 56.2 135 28.1
Thhalv10025269m.g Eutrema salsugineum HOM05D001335 ORTHO05D001184 6.2e-06 56.2 159 32.1
THA.LOC104811483 Tarenaya hassleriana HOM05D001335 ORTHO05D001184 6.2e-06 56.2 104 32.7


User provided reference genes

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