Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G029600 Glycine max HOM05D004344 ORTHO05D021344 2.9e-48 194.9 98 100.0
Glyma.01G187400 Glycine max HOM05D004344 ORTHO05D006026 4.5e-25 117.9 62 93.5
Phvul.002G017900 Phaseolus vulgaris HOM05D004344 ORTHO05D006026 4.5e-25 117.9 62 93.5
VMungo1215G1933 Vigna mungo HOM05D004344 ORTHO05D006026 5.9e-25 117.5 62 91.9
VMungo0464G2085 Vigna mungo HOM05D004344 ORTHO05D006026 3.8e-24 114.8 62 90.3
Ca_24759_v3 Cicer arietinum L. HOM05D004344 ORTHO05D006026 1.1e-23 113.2 62 87.1
Lj3g0019632 Lotus japonicus HOM05D004344 ORTHO05D006026 1.9e-23 112.5 62 87.1
TPR.G16152 Trifolium pratense HOM05D004344 ORTHO05D006026 2.5e-23 112.1 62 85.5
Medtr5g017070 Medicago truncatula HOM05D004344 ORTHO05D006026 5.5e-23 110.9 62 83.9
Ciclev10024699m.g Citrus clementina HOM05D004344 ORTHO05D006026 7.2e-23 110.5 63 84.1
TPR.G26904 Trifolium pratense HOM05D004344 ORTHO05D006026 7.2e-23 110.5 62 83.9
Atru.chr3.306 Acer truncatum HOM05D004344 ORTHO05D006026 9.4e-23 110.2 63 84.1
CANSAT01G0155 Cannabis sativa HOM05D004344 ORTHO05D006026 1.2e-22 109.8 63 82.5
arahy.Tifrunner.gnm1.ann1.KW6QS2 Arachis hypogaea HOM05D004344 ORTHO05D006026 2.7e-22 108.6 62 83.9
COL.COLO4_11441 Corchorus olitorius HOM05D004344 ORTHO05D006026 3.6e-22 108.2 62 85.5
Aqoxy7G02851 Aquilegia oxysepala HOM05D004344 ORTHO05D006026 6.1e-22 107.5 62 87.1
CiPaw.01G016700 Carya illinoinensis HOM05D004344 ORTHO05D006026 1.0e-21 106.7 63 82.5
Psat2g166640 Pisum sativum HOM05D004344 ORTHO05D006026 1.0e-21 106.7 62 80.6
CSS0049451 Camellia sinensis var. sinensis HOM05D004344 ORTHO05D006026 1.8e-21 105.9 62 82.3
Lalb_Chr09g0323231 Lupinus albus HOM05D004344 ORTHO05D006026 1.8e-21 105.9 62 83.9
Potri.007G045300 Populus trichocarpa HOM05D004344 ORTHO05D006026 1.8e-21 105.9 62 83.9
Thecc.01G058600 Theobroma cacao HOM05D004344 ORTHO05D006026 1.8e-21 105.9 62 82.3
Dinv26836 Davidia involucrata HOM05D004344 ORTHO05D006026 2.3e-21 105.5 62 82.3
Gohir.D11G200300 Gossypium hirsutum HOM05D004344 ORTHO05D006026 2.3e-21 105.5 62 82.3
Gorai.007G214600 Gossypium raimondii HOM05D004344 ORTHO05D006026 2.3e-21 105.5 62 82.3
Cpa.g.sc55.134 Carica papaya HOM05D004344 ORTHO05D006026 3.0e-21 105.1 63 82.5
Gohir.A11G193200 Gossypium hirsutum HOM05D004344 ORTHO05D006026 3.0e-21 105.1 62 82.3
Hma1.2p1_0017F.1_g011490 Hydrangea macrophylla HOM05D004344 ORTHO05D006026 3.0e-21 105.1 62 80.6
Hma1.2p1_0017F.1_g011500 Hydrangea macrophylla HOM05D004344 ORTHO05D006026 3.0e-21 105.1 62 80.6
Sabra07G0040300 Salix brachista HOM05D004344 ORTHO05D006026 3.0e-21 105.1 62 82.3
QL06p040994 Quercus lobata HOM05D004344 ORTHO05D006026 4.0e-21 104.8 62 80.6
Actinidia12045 Actinidia chinensis HOM05D004344 ORTHO05D006026 6.7e-21 104.0 62 79.0
Haze_15381 Corylus avellana HOM05D004344 ORTHO05D006026 6.7e-21 104.0 62 82.3
Migut.H00422 Erythranthe guttata HOM05D004344 ORTHO05D006026 6.7e-21 104.0 62 77.4
Prupe.7G131600 Prunus persica HOM05D004344 ORTHO05D006026 1.1e-20 103.2 63 79.4
Cfa004033 Carpinus fangiana HOM05D004344 ORTHO05D006026 1.5e-20 102.8 62 80.6
MELO3C020860.2 Cucumis melo HOM05D004344 ORTHO05D006026 1.5e-20 102.8 62 80.6
Manes.13G122900 Manihot esculenta HOM05D004344 ORTHO05D006026 1.5e-20 102.8 62 82.3
Sopen02g037860 Solanum pennellii HOM05D004344 ORTHO05D006026 1.5e-20 102.8 62 77.4
TWI09G1157 Tripterygium wilfordii HOM05D004344 ORTHO05D006026 1.5e-20 102.8 62 80.6
Sed0002898 Sechium edule HOM05D004344 ORTHO05D006026 2.0e-20 102.4 62 79.0
TAR376G0722 Trochodendron aralioides HOM05D004344 ORTHO05D006026 3.3e-20 101.7 62 79.0
HanXRQChr14g0449061 Helianthus annuus HOM05D004344 ORTHO05D006026 4.4e-20 101.3 60 81.7
Solyc02g093300.3 Solanum lycopersicum HOM05D004344 ORTHO05D006026 4.4e-20 101.3 62 75.8
ClCG02G012370 Citrullus lanatus HOM05D004344 ORTHO05D006026 5.7e-20 100.9 62 79.0
SGA_v2.0_scaffold46G17397 Striga asiatica HOM05D004344 ORTHO05D006026 5.7e-20 100.9 68 67.6
CsaV3_2G016500 Cucumis sativus L. HOM05D004344 ORTHO05D006026 7.4e-20 100.5 62 79.0
Lsat_1_v5_gn_2_84960 Lactuca sativa HOM05D004344 ORTHO05D006026 7.4e-20 100.5 60 78.3
HPP92_025047 Vanilla planifolia HOM05D004344 ORTHO05D006026 7.4e-20 100.5 62 79.0
ECA238G4385 Erigeron canadensis HOM05D004344 ORTHO05D006026 1.3e-19 99.8 63 76.2
MD15G1285400 Malus domestica HOM05D004344 ORTHO05D006026 1.3e-19 99.8 63 76.2
CDE04G1072 Ceratophyllum demersum HOM05D004344 ORTHO05D006026 1.7e-19 99.4 62 80.6
DCAR_025744 Daucus carota HOM05D004344 ORTHO05D006026 2.8e-19 98.6 66 77.3
FAN26G0646 Fragaria x ananassa HOM05D004344 ORTHO05D006026 4.8e-19 97.8 63 76.2
ATR0584G066 Amborella trichopoda HOM05D004344 ORTHO05D006026 6.3e-19 97.4 62 75.8
Cc07_g06110 Coffea canephora HOM05D004344 ORTHO05D006026 8.2e-19 97.1 68 70.6
Os01g0868300 Oryza sativa ssp. japonica HOM05D004344 ORTHO05D006026 8.2e-19 97.1 62 77.4
unitig_899.g14946 Utricularia gibba HOM05D004344 ORTHO05D006026 8.2e-19 97.1 64 75.0
Oeu020531.3 Olea europaea HOM05D004344 ORTHO05D006026 1.1e-18 96.7 67 73.1
RcHm_v2.0_Chr2g0117021 Rosa chinensis HOM05D004344 ORTHO05D006026 1.1e-18 96.7 63 74.6
Zm00001eb146610 Zea mays HOM05D004344 ORTHO05D006026 1.1e-18 96.7 62 75.8
SEGI_30504 Sequoiadendron giganteum HOM05D004344 ORTHO05D006026 1.4e-18 96.3 62 74.2
SEGI_39908 Sequoiadendron giganteum HOM05D004344 ORTHO05D006026 1.4e-18 96.3 62 74.2
MD02G1174200 Malus domestica HOM05D004344 ORTHO05D006026 1.8e-18 95.9 60 76.7
Nn5g30338 Nelumbo nucifera HOM05D004344 ORTHO05D006026 1.8e-18 95.9 62 74.2
Peaxi162Scf00450g00127 Petunia axillaris HOM05D004344 ORTHO05D006026 1.8e-18 95.9 69 68.1
Sc03g0001670 Simmondsia chinensis HOM05D004344 ORTHO05D006026 1.8e-18 95.9 62 75.8
FvH4_1g22730 Fragaria vesca HOM05D004344 ORTHO05D006026 2.4e-18 95.5 63 74.6
FAN23G1634 Fragaria x ananassa HOM05D004344 ORTHO05D006026 2.4e-18 95.5 63 74.6
arahy.Tifrunner.gnm1.ann1.7M3CIR Arachis hypogaea HOM05D004344 ORTHO05D006026 3.1e-18 95.1 86 60.5
AagrBONN_evm.TU.Sc2ySwM_344.2703__2704 Anthoceros agrestis HOM05D004344 ORTHO05D006026 5.3e-18 94.4 62 69.4
MSTRG.23740 Avicennia marina HOM05D004344 ORTHO05D006026 5.3e-18 94.4 62 74.2
FAN19G2019 Fragaria x ananassa HOM05D004344 ORTHO05D006026 5.3e-18 94.4 62 74.2
SGA_v2.0_scaffold15G07321 Striga asiatica HOM05D004344 ORTHO05D006026 9.1e-18 93.6 66 69.7
Eucgr.H01686 Eucalyptus grandis HOM05D004344 ORTHO05D006026 1.6e-17 92.8 62 74.2
PGR102G1820 Punica granatum HOM05D004344 ORTHO05D006026 1.6e-17 92.8 62 74.2
Lj2g0014817 Lotus japonicus HOM05D004344 ORTHO05D006026 2.0e-17 92.4 62 72.6
Rhsim10G0115900 Rhododendron simsii HOM05D004344 ORTHO05D006026 4.5e-17 91.3 77 62.3
AT5G67100 Arabidopsis thaliana HOM05D004344 ORTHO05D006026 7.7e-17 90.5 62 71.0
Carub.0008s2741 Capsella rubella HOM05D004344 ORTHO05D006026 7.7e-17 90.5 62 72.6
PSO541G2052 Papaver somniferum HOM05D004344 ORTHO05D006026 1.0e-16 90.1 61 73.8
THA.LOC104827210 Tarenaya hassleriana HOM05D004344 ORTHO05D006026 1.0e-16 90.1 62 71.0
Aa31LG1G15620 Aethionema arabicum HOM05D004344 ORTHO05D006026 1.7e-16 89.4 62 72.6
PSO675G1845 Papaver somniferum HOM05D004344 ORTHO05D006026 2.9e-16 88.6 62 69.4
BcaC06g34790 Brassica carinata HOM05D004344 ORTHO05D006026 3.8e-16 88.2 62 71.0
A07p16860 Brassica napus HOM05D004344 ORTHO05D006026 3.8e-16 88.2 62 71.0
C07p24670 Brassica napus HOM05D004344 ORTHO05D006026 3.8e-16 88.2 62 71.0
CARHR280550 Cardamine hirsuta HOM05D004344 ORTHO05D006026 3.8e-16 88.2 62 71.0
Mapoly0074s0003 Marchantia polymorpha HOM05D004344 ORTHO05D006026 3.8e-16 88.2 62 69.4
Sp2g29580 Schrenkiella parvula HOM05D004344 ORTHO05D006026 3.8e-16 88.2 62 71.0
Carub.0008s0466 Capsella rubella HOM05D004344 ORTHO05D006026 5.0e-16 87.8 62 69.4
AUR62001915 Chenopodium quinoa HOM05D004344 ORTHO05D006026 5.0e-16 87.8 67 65.7
CARHR066690 Cardamine hirsuta HOM05D004344 ORTHO05D006026 6.5e-16 87.4 62 69.4
AUR62003893 Chenopodium quinoa HOM05D004344 ORTHO05D006026 1.1e-15 86.7 62 69.4
Lj7C70T9 Lonicera japonica HOM05D004344 ORTHO05D006026 1.5e-15 86.3 62 72.6
SMO144G0147 Selaginella moellendorffii HOM05D004344 ORTHO05D006026 2.5e-15 85.5 62 67.7
AL8G20700 Arabidopsis lyrata HOM05D004344 ORTHO05D006026 4.2e-15 84.7 62 69.4
SMO335G0007 Selaginella moellendorffii HOM05D004344 ORTHO05D021344 5.5e-15 84.3 63 65.1
vmacro05947 Vaccinium macrocarpon HOM05D004344 ORTHO05D006026 5.5e-15 84.3 62 72.6
BolC2t11212H Brassica oleracea HOM05D004344 ORTHO05D006026 9.4e-15 83.6 78 60.3
Thhalv10003515m.g Eutrema salsugineum HOM05D004344 ORTHO05D006026 2.7e-14 82.0 62 66.1
Pp3c1_21120 Physcomitrium patens HOM05D004344 ORTHO05D006026 6.1e-14 80.9 62 67.7
Ah.03g145340 Amaranthus hybridus HOM05D004344 ORTHO05D006026 1.0e-13 80.1 84 52.4
AL8G22110 Arabidopsis lyrata HOM05D004344 ORTHO05D006026 1.0e-13 80.1 62 66.1
BraA02t08352Z Brassica rapa HOM05D004344 ORTHO05D006026 6.8e-13 77.4 55 69.1
Nitab4.5_0003519g0040 Nicotiana tabacum HOM05D004344 ORTHO05D006026 6.8e-13 77.4 62 61.3
Nitab4.5_0002029g0030 Nicotiana tabacum HOM05D004344 ORTHO05D006026 8.8e-13 77.0 62 62.9
C02p51210 Brassica napus HOM05D004344 ORTHO05D006026 4.4e-12 74.7 55 67.3
BolC7t42987H Brassica oleracea HOM05D004344 ORTHO05D006026 6.3e-11 70.9 96 45.8
BraA07t29411Z Brassica rapa HOM05D004344 ORTHO05D006026 6.3e-11 70.9 96 45.8
CBR_g30807 Chara braunii HOM05D000019 ORTHO05D000048 6.3e-11 70.9 61 57.4
arahy.Tifrunner.gnm1.ann1.EE0YL2 Arachis hypogaea HOM05D004344 ORTHO05D006026 8.3e-11 70.5 38 89.5
GSVIVG01022113001 Vitis vinifera HOM05D004344 ORTHO05D006026 1.4e-10 69.7 36 91.7
AL8G44260 Arabidopsis lyrata HOM05D004344 ORTHO05D006026 1.6e-09 66.2 38 86.8
MCO16G420 Micromonas commoda HOM05D004344 ORTHO05D006026 1.6e-09 66.2 50 62.0
PRCOL_00001322 Prasinoderma coloniale HOM05D004344 ORTHO05D006026 3.5e-09 65.1 62 48.4
A02p33280 Brassica napus HOM05D004344 ORTHO05D006026 1.3e-08 63.2 81 46.9
BcaC03g17194 Brassica carinata HOM05D004344 ORTHO05D006026 6.5e-08 60.8 80 46.2
Hund16343 Selenicereus undatus HOM05D004344 ORTHO05D006026 1.1e-07 60.1 60 53.3


User provided reference genes

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