Gene: Solyc02g093300.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc02g093300.3
  • Transcript Identifier Solyc02g093300.3.1
  • Gene Type Coding gene
  • Location SL4.0ch02 : 52257165-52269687 : negative

Gene Family Information

  • ID HOM05D004344
  • #Genes/#Species 164/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc02g093300.3.1
  • uniprot H9E8V2
  • gene_id Solyc02g093300

Descriptions

  • Description DNA polymerase (AHRD V3.3 *** H9E8V2_SOLLC)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006273
IBA
IEA
GOA Databaselagging strand elongation
GO:0006270
IEA
GOA DatabaseDNA replication initiation
GO:0009965
IEA
GOA Databaseleaf morphogenesis
GO:0006272
IBA
GOA Databaseleading strand elongation
GO:1902975
IBA
GOA Databasemitotic DNA replication initiation
GO:0006260
IEA
GOA DatabaseDNA replication
GO:0006260
IEA
InterProDNA replication
GO:0006269
IEA
GOA DatabaseDNA replication, synthesis of RNA primer
GO:0071897
IEA
GOA DatabaseDNA biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003896
IEA
GOA DatabaseDNA primase activity
GO:0019103
IBA
GOA Databasepyrimidine nucleotide binding
GO:0017076
IBA
GOA Databasepurine nucleotide binding
GO:0003682
IBA
GOA Databasechromatin binding
GO:0003688
IBA
GOA DatabaseDNA replication origin binding
GO:0003697
IBA
GOA Databasesingle-stranded DNA binding
GO:0003887
IBA
IEA
GOA DatabaseDNA-directed DNA polymerase activity
GO:0003887
IEA
InterProDNA-directed DNA polymerase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0000166
IEA
InterPronucleotide binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0016779
IEA
GOA Databasenucleotidyltransferase activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0051536
IEA
GOA Databaseiron-sulfur cluster binding
GO:0051539
IEA
GOA Database4 iron, 4 sulfur cluster binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005658
IBA
GOA Databasealpha DNA polymerase:primase complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain
IPR012337 Ribonuclease H-like superfamily
IPR043502 DNA/RNA polymerase superfamily
IPR006172 DNA-directed DNA polymerase, family B
IPR024647 DNA polymerase alpha catalytic subunit, N-terminal domain
IPR015088 Zinc finger, DNA-directed DNA polymerase, family B, alpha
IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain
IPR036397 Ribonuclease H superfamily
IPR042087 DNA polymerase family B, thumb domain
IPR023211 DNA polymerase, palm domain superfamily
IPR038256 DNA polymerase alpha, zinc finger domain superfamily
Mapman id Description
13.2.3.1.1 Cell cycle organisation.DNA replication.elongation.DNA polymerase alpha complex.catalytic component POLA1