Gene: Nitab4.5_0003519g0040
General Information
Structural Information
- Species Nicotiana tabacum
- Gene Identifier Nitab4.5_0003519g0040
- Transcript Identifier Nitab4.5_0003519g0040.1
- Gene Type Coding gene
- Location Nitab4.5_0003519 : 15579-27543 : negative
Gene Family Information
- ID HOM05D004344
- #Genes/#Species 164/96
- Phylogenetic origin
- ID ORTHO05D006026
- #Genes/#Species 148/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Nitab4.5_0003519g0040.1
- SR1-identifier Nta03g13600.1
Descriptions
- Description DNA-directed DNA polymerase, family B, multifunctional domain, DNA polymerase, palm domain, DNA-directed DNA polymerase, family B, pol2, DNA polymerase alpha catalytic subunit, N-terminal domain, DNA-directed DNA polymerase, family B, Zinc finger, DNA-directed DNA polymerase, family B, alpha, DNA-directed DNA polymerase, family B, exonuclease domain, Ribonuclease H-like domain, DNA-directed DNA polymerase, family B, conserved site
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006260 | IEA | InterPro | DNA replication | |
| GO:0006270 | ISO | PLAZA Integrative Orthology | DNA replication initiation | Os01g0868300 |
| GO:0006273 | ISO | PLAZA Integrative Orthology | lagging strand elongation | Os01g0868300 |
| GO:0071897 | ISO | PLAZA Integrative Orthology | DNA biosynthetic process | AT5G67100 |
| GO:0009965 | ISO | PLAZA Integrative Orthology | leaf morphogenesis | AT5G67100 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003887 | IEA | InterPro | DNA-directed DNA polymerase activity | |
| GO:0000166 | IEA | InterPro | nucleotide binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003896 | ISO | PLAZA Integrative Orthology | DNA primase activity | Os01g0868300 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | Os01g0868300 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR015088 | Zinc finger, DNA-directed DNA polymerase, family B, alpha |
| IPR043502 | DNA/RNA polymerase superfamily |
| IPR042087 | DNA polymerase family B, thumb domain |
| IPR006172 | DNA-directed DNA polymerase, family B |
| IPR038256 | DNA polymerase alpha, zinc finger domain superfamily |
| IPR023211 | DNA polymerase, palm domain superfamily |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR024647 | DNA polymerase alpha catalytic subunit, N-terminal domain |
| IPR006134 | DNA-directed DNA polymerase, family B, multifunctional domain |
| IPR036397 | Ribonuclease H superfamily |
| IPR006133 | DNA-directed DNA polymerase, family B, exonuclease domain |
| Mapman id | Description |
|---|---|
| 13.2.3.1.1 | Cell cycle organisation.DNA replication.elongation.DNA polymerase alpha complex.catalytic component POLA1 |