Gene: Pp3c1_21120

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c1_21120
  • Transcript Identifier Pp3c1_21120V3.1
  • Gene Type Coding gene
  • Location Chr01 : 15981909-15993880 : positive

Gene Family Information

  • ID HOM05D004344
  • #Genes/#Species 164/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c1_21120V3.1
  • pacid 32970482
  • alias Pp1s257_37V6
  • alias Phypa_94238
  • alias Phypa_60547
  • uniprot A0A2K1L907

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009965
ISO
PLAZA Integrative Orthologyleaf morphogenesis AT5G67100
GO:0006270
ISO
PLAZA Integrative OrthologyDNA replication initiation Os01g0868300
GO:0006273
IBA
GOA Databaselagging strand elongation
GO:0006272
IBA
GOA Databaseleading strand elongation
GO:1902975
IBA
GOA Databasemitotic DNA replication initiation
GO:0006260
IEA
GOA DatabaseDNA replication
GO:0006260
IEA
InterProDNA replication
GO:0071897
IEA
GOA DatabaseDNA biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003896
ISO
PLAZA Integrative OrthologyDNA primase activity Os01g0868300
GO:0019103
IBA
GOA Databasepyrimidine nucleotide binding
GO:0017076
IBA
GOA Databasepurine nucleotide binding
GO:0003682
IBA
GOA Databasechromatin binding
GO:0003688
IBA
GOA DatabaseDNA replication origin binding
GO:0003697
IBA
GOA Databasesingle-stranded DNA binding
GO:0003887
IBA
IEA
GOA DatabaseDNA-directed DNA polymerase activity
GO:0003887
IEA
InterProDNA-directed DNA polymerase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0000166
IEA
InterPronucleotide binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0016779
IEA
GOA Databasenucleotidyltransferase activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0051536
IEA
GOA Databaseiron-sulfur cluster binding
GO:0051539
IEA
GOA Database4 iron, 4 sulfur cluster binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005658
IBA
GOA Databasealpha DNA polymerase:primase complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR023211 DNA polymerase, palm domain superfamily
IPR038256 DNA polymerase alpha, zinc finger domain superfamily
IPR036397 Ribonuclease H superfamily
IPR006172 DNA-directed DNA polymerase, family B
IPR024647 DNA polymerase alpha catalytic subunit, N-terminal domain
IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain
IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain
IPR012337 Ribonuclease H-like superfamily
IPR042087 DNA polymerase family B, thumb domain
IPR015088 Zinc finger, DNA-directed DNA polymerase, family B, alpha
IPR043502 DNA/RNA polymerase superfamily
Mapman id Description
13.2.3.1.1 Cell cycle organisation.DNA replication.elongation.DNA polymerase alpha complex.catalytic component POLA1