Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G098733 Glycine max HOM05D002024 ORTHO05D007288 1.7e-128 462.6 229 100.0
Glyma.06G305900 Glycine max HOM05D002024 ORTHO05D007288 8.2e-102 374.0 212 87.3
VMungo1127G2134 Vigna mungo HOM05D002024 ORTHO05D007288 3.1e-77 292.4 227 69.6
Phvul.011G103500 Phaseolus vulgaris HOM05D002024 ORTHO05D007288 1.0e-72 277.3 226 68.6
Lalb_Chr19g0135891 Lupinus albus HOM05D002024 ORTHO05D007288 9.1e-69 264.2 227 61.7
arahy.Tifrunner.gnm1.ann1.FW4LSX Arachis hypogaea HOM05D002024 ORTHO05D007288 1.0e-56 224.2 228 55.7
TPR.G4605 Trifolium pratense HOM05D002024 ORTHO05D007288 2.3e-56 223.0 232 55.2
Ca_30385_v3 Cicer arietinum L. HOM05D002024 ORTHO05D007288 3.0e-56 222.6 213 58.7
arahy.Tifrunner.gnm1.ann1.3TL5KL Arachis hypogaea HOM05D002024 ORTHO05D007288 8.8e-56 221.1 228 54.8
Psat7g157200 Pisum sativum HOM05D002024 ORTHO05D007288 1.2e-55 220.7 220 56.4
Ca_12394_v3 Cicer arietinum L. HOM05D002024 ORTHO05D007288 2.8e-54 216.1 213 58.7
Medtr4g048230 Medicago truncatula HOM05D002024 ORTHO05D007288 2.8e-54 216.1 226 56.6
Lj3g0021786 Lotus japonicus HOM05D002024 ORTHO05D007288 1.4e-53 213.8 215 55.3
Dinv05430 Davidia involucrata HOM05D002024 ORTHO05D007288 3.7e-46 189.1 225 47.6
TAR627G0588 Trochodendron aralioides HOM05D002024 ORTHO05D007288 3.5e-44 182.6 229 46.7
Dinv39713 Davidia involucrata HOM05D002024 ORTHO05D007288 5.0e-43 178.7 217 48.8
FAN02G4513 Fragaria x ananassa HOM05D002024 ORTHO05D007288 3.6e-41 172.6 216 47.2
FAN05G4210 Fragaria x ananassa HOM05D002024 ORTHO05D007288 3.6e-41 172.6 216 47.2
FvH4_6g43150 Fragaria vesca HOM05D002024 ORTHO05D007288 6.8e-40 168.3 216 46.3
Thecc.02G316100 Theobroma cacao HOM05D002024 ORTHO05D007288 1.5e-39 167.2 236 43.6
Haze_12862 Corylus avellana HOM05D002024 ORTHO05D007288 2.6e-39 166.4 225 44.4
Eucgr.A01124 Eucalyptus grandis HOM05D002024 ORTHO05D007288 2.6e-39 166.4 212 45.3
FAN14G2536 Fragaria x ananassa HOM05D002024 ORTHO05D007288 2.6e-39 166.4 215 45.6
Potri.002G229000 Populus trichocarpa HOM05D002024 ORTHO05D007288 3.4e-39 166.0 214 47.7
Ciclev10014176m.g Citrus clementina HOM05D002024 ORTHO05D007288 7.5e-39 164.9 218 45.9
Sc06g0009580 Simmondsia chinensis HOM05D002024 ORTHO05D007288 9.8e-39 164.5 218 45.9
TWI36G0154 Tripterygium wilfordii HOM05D002024 ORTHO05D007288 1.7e-38 163.7 224 44.6
Prupe.3G217000 Prunus persica HOM05D002024 ORTHO05D007288 2.2e-38 163.3 227 45.4
Gohir.A04G144700 Gossypium hirsutum HOM05D002024 ORTHO05D007288 3.7e-38 162.5 236 43.6
Rhsim06G0162700 Rhododendron simsii HOM05D002024 ORTHO05D007288 4.9e-38 162.2 229 43.2
Nn1g03510 Nelumbo nucifera HOM05D002024 ORTHO05D007288 8.3e-38 161.4 216 45.8
RcHm_v2.0_Chr2g0159251 Rosa chinensis HOM05D002024 ORTHO05D007288 1.4e-37 160.6 224 45.5
vmacro12202 Vaccinium macrocarpon HOM05D002024 ORTHO05D007288 1.4e-37 160.6 229 43.2
Cpa.g.sc87.78 Carica papaya HOM05D002024 ORTHO05D007288 4.1e-37 159.1 221 44.3
CiPaw.04G116100 Carya illinoinensis HOM05D002024 ORTHO05D007288 9.2e-37 157.9 237 44.7
QL08p033036 Quercus lobata HOM05D002024 ORTHO05D007288 9.2e-37 157.9 225 42.7
CSS0021724 Camellia sinensis var. sinensis HOM05D002024 ORTHO05D007288 1.2e-36 157.5 221 45.2
GSVIVG01030425001 Vitis vinifera HOM05D002024 ORTHO05D007288 1.2e-36 157.5 220 44.5
Atru.chr6.3187 Acer truncatum HOM05D002024 ORTHO05D007288 1.6e-36 157.1 222 43.2
Gohir.D04G189200 Gossypium hirsutum HOM05D002024 ORTHO05D007288 2.0e-36 156.8 241 44.4
Gorai.012G184500 Gossypium raimondii HOM05D002024 ORTHO05D007288 2.0e-36 156.8 241 44.4
Sabra02G0175000 Salix brachista HOM05D002024 ORTHO05D007288 2.0e-36 156.8 224 43.3
Duzib248G0941 Durio zibethinus HOM05D002024 ORTHO05D007288 4.6e-36 155.6 241 42.7
MD09G1109200 Malus domestica HOM05D002024 ORTHO05D007288 1.0e-35 154.5 223 44.4
Cc05_g04580 Coffea canephora HOM05D002024 ORTHO05D007288 1.3e-35 154.1 218 42.2
Lj8A125T72 Lonicera japonica HOM05D002024 ORTHO05D007288 1.3e-35 154.1 224 44.6
THA.LOC104826151 Tarenaya hassleriana HOM05D002024 ORTHO05D007288 1.3e-35 154.1 212 45.8
Nitab4.5_0002137g0070 Nicotiana tabacum HOM05D002024 ORTHO05D007288 1.7e-35 153.7 221 43.4
COL.COLO4_27729 Corchorus olitorius HOM05D002024 ORTHO05D007288 5.0e-35 152.1 240 40.8
SalBow7G2680 Salvia bowleyana HOM05D002024 ORTHO05D007288 5.0e-35 152.1 223 41.7
CsaV3_7G003570 Cucumis sativus L. HOM05D002024 ORTHO05D007288 2.5e-34 149.8 212 44.3
AUR62025026 Chenopodium quinoa HOM05D002024 ORTHO05D007288 5.6e-34 148.7 236 41.9
ECA236G2373 Erigeron canadensis HOM05D002024 ORTHO05D007288 5.6e-34 148.7 212 41.0
Oeu019888.4 Olea europaea HOM05D002024 ORTHO05D007288 5.6e-34 148.7 216 43.5
BraA05t20260Z Brassica rapa HOM05D002024 ORTHO05D007288 7.3e-34 148.3 213 42.3
Actinidia09716 Actinidia chinensis HOM05D002024 ORTHO05D007288 1.2e-33 147.5 227 43.2
Actinidia27264 Actinidia chinensis HOM05D002024 ORTHO05D007288 1.2e-33 147.5 227 43.2
CANSAT64G1657 Cannabis sativa HOM05D002024 ORTHO05D007288 1.2e-33 147.5 231 38.5
Carub.0004s1377 Capsella rubella HOM05D002024 ORTHO05D007288 1.2e-33 147.5 214 43.0
FAN09G4217 Fragaria x ananassa HOM05D002024 ORTHO05D007288 1.2e-33 147.5 211 44.1
CARHR126240 Cardamine hirsuta HOM05D002024 ORTHO05D007288 2.1e-33 146.7 212 41.0
ClCG02G001940 Citrullus lanatus HOM05D002024 ORTHO05D007288 2.8e-33 146.4 212 46.2
MELO3C018818.2 Cucumis melo HOM05D002024 ORTHO05D007288 4.7e-33 145.6 212 43.9
Migut.M00437 Erythranthe guttata HOM05D002024 ORTHO05D007288 4.7e-33 145.6 215 42.8
PGR042G3011 Punica granatum HOM05D002024 ORTHO05D007288 4.7e-33 145.6 228 40.4
Peaxi162Scf00007g00832 Petunia axillaris HOM05D002024 ORTHO05D007288 6.2e-33 145.2 225 41.3
Aqoxy1G02138 Aquilegia oxysepala HOM05D002024 ORTHO05D007288 8.0e-33 144.8 212 42.9
Nitab4.5_0004417g0080 Nicotiana tabacum HOM05D002024 ORTHO05D007288 1.4e-32 144.1 221 40.7
A05p13190 Brassica napus HOM05D002024 ORTHO05D007288 2.3e-32 143.3 212 41.0
Sed0008958 Sechium edule HOM05D002024 ORTHO05D007288 2.3e-32 143.3 212 41.0
Manes.12G066500 Manihot esculenta HOM05D002024 ORTHO05D007288 1.2e-31 141.0 224 42.4
Aa31LG5G4860 Aethionema arabicum HOM05D002024 ORTHO05D007288 2.0e-31 140.2 216 39.4
C04p17230 Brassica napus HOM05D002024 ORTHO05D007288 2.0e-31 140.2 212 39.6
BolC4t23275H Brassica oleracea HOM05D002024 ORTHO05D007288 2.0e-31 140.2 212 39.6
Thhalv10016228m.g Eutrema salsugineum HOM05D002024 ORTHO05D007288 3.4e-31 139.4 212 40.1
Sp4g14790 Schrenkiella parvula HOM05D002024 ORTHO05D007288 3.4e-31 139.4 212 39.6
AL4G27810 Arabidopsis lyrata HOM05D002024 ORTHO05D007288 4.4e-31 139.0 212 38.7
Hund06720 Selenicereus undatus HOM05D002024 ORTHO05D007288 4.4e-31 139.0 223 40.8
CAN.G1740.3 Capsicum annuum HOM05D002024 ORTHO05D007288 5.8e-31 138.7 230 40.9
AT2G32415 Arabidopsis thaliana HOM05D002024 ORTHO05D007288 7.5e-31 138.3 212 39.2
HanXRQChr16g0504911 Helianthus annuus HOM05D002024 ORTHO05D007288 7.5e-31 138.3 212 42.0
BcaB06g28594 Brassica carinata HOM05D002024 ORTHO05D007288 2.2e-30 136.7 212 39.6
Sed0017029 Sechium edule HOM05D002024 ORTHO05D007288 2.2e-30 136.7 212 39.6
CDE05G2902 Ceratophyllum demersum HOM05D002024 ORTHO05D007288 2.9e-30 136.3 231 39.8
DCAR_019765 Daucus carota HOM05D002024 ORTHO05D007288 2.9e-30 136.3 267 35.6
MBI18_g03588_MAGBIO Magnolia biondii HOM05D002024 ORTHO05D007288 6.4e-30 135.2 231 39.4
Solyc07g052340.4 Solanum lycopersicum HOM05D002024 ORTHO05D007288 8.3e-30 134.8 226 40.3
Sopen07g025960 Solanum pennellii HOM05D002024 ORTHO05D007288 8.3e-30 134.8 233 37.3
A04p24930 Brassica napus HOM05D002024 ORTHO05D007288 4.1e-29 132.5 212 41.5
BraA04t18006Z Brassica rapa HOM05D002024 ORTHO05D007288 5.4e-29 132.1 212 40.6
BcaC02g07923 Brassica carinata HOM05D002024 ORTHO05D007288 7.1e-29 131.7 212 41.0
C04p61920 Brassica napus HOM05D002024 ORTHO05D007288 7.1e-29 131.7 212 41.0
BolC4t27671H Brassica oleracea HOM05D002024 ORTHO05D007288 2.7e-28 129.8 212 40.6
Lsat_1_v5_gn_7_92221 Lactuca sativa HOM05D002024 ORTHO05D007288 2.3e-27 126.7 212 38.7
Zm00001eb322610 Zea mays HOM05D002024 ORTHO05D007288 3.9e-27 125.9 228 38.6
ATR0794G134 Amborella trichopoda HOM05D002024 ORTHO05D007288 1.5e-26 124.0 241 36.5
EL10Ac9g20670 Beta vulgaris HOM05D002024 ORTHO05D007288 2.5e-26 123.2 247 36.8
PSO541G4901 Papaver somniferum HOM05D002024 ORTHO05D007288 4.3e-26 122.5 226 36.3
PSO675G1279 Papaver somniferum HOM05D002024 ORTHO05D007288 2.8e-25 119.8 219 37.9
unitig_899.g15271 Utricularia gibba HOM05D002024 ORTHO05D007288 3.6e-25 119.4 212 37.3
Os07g0513100 Oryza sativa ssp. japonica HOM05D002024 ORTHO05D007288 2.0e-23 113.6 231 36.4
Pp3c18_1700 Physcomitrium patens HOM05D002024 ORTHO05D007288 4.6e-20 102.4 222 34.7
Mapoly0006s0210 Marchantia polymorpha HOM05D002024 ORTHO05D007288 2.8e-17 93.2 212 31.6
BcaC02g11322 Brassica carinata HOM05D002024 ORTHO05D007288 3.1e-16 89.7 112 42.9
CBR_g39322 Chara braunii HOM05D002024 ORTHO05D007288 2.4e-13 80.1 247 28.3
HPP92_014132 Vanilla planifolia HOM05D002024 ORTHO05D007288 1.7e-11 73.9 147 35.4
CDE10G1161 Ceratophyllum demersum HOM05D002024 ORTHO05D007288 2.3e-11 73.6 198 32.8
ECA238G0106 Erigeron canadensis HOM05D000014 ORTHO05D007288 8.1e-09 65.1 67 43.3


User provided reference genes

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