Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G121900 Glycine max HOM05D007300 ORTHO05D009301 0.0e+00 1281.5 657 100.0
Glyma.05G164500 Glycine max HOM05D007300 ORTHO05D009301 0.0e+00 1143.3 681 87.4
Phvul.002G244500 Phaseolus vulgaris HOM05D007300 ORTHO05D009301 8.1e-304 1046.6 669 81.3
VMungo0251G3397 Vigna mungo HOM05D007300 ORTHO05D009301 9.9e-294 1013.1 661 81.1
Lj4g0024386 Lotus japonicus HOM05D007300 ORTHO05D009301 1.9e-260 902.5 658 71.3
Medtr8g088030 Medicago truncatula HOM05D007300 ORTHO05D009301 5.5e-260 901.0 677 70.5
Ca_17871_v3 Cicer arietinum L. HOM05D007300 ORTHO05D009301 1.4e-258 896.3 669 70.3
Lalb_Chr13g0295471 Lupinus albus HOM05D007300 ORTHO05D009301 5.7e-249 864.4 670 67.8
TPR.G6793 Trifolium pratense HOM05D007300 ORTHO05D009301 6.3e-248 860.9 668 68.1
arahy.Tifrunner.gnm1.ann1.D64P8M Arachis hypogaea HOM05D007300 ORTHO05D009301 1.2e-243 846.7 671 68.1
arahy.Tifrunner.gnm1.ann1.FQ35JE Arachis hypogaea HOM05D007300 ORTHO05D009301 5.2e-242 841.3 685 66.7
Psat7g066760 Pisum sativum HOM05D007300 ORTHO05D009301 1.5e-241 839.7 710 63.5
Cfa001024 Carpinus fangiana HOM05D007300 ORTHO05D009301 2.0e-214 749.6 668 60.6
CiPaw.10G096200 Carya illinoinensis HOM05D007300 ORTHO05D009301 6.0e-206 721.5 651 58.7
QL05p060322 Quercus lobata HOM05D007300 ORTHO05D009301 7.3e-204 714.5 625 60.5
Haze_05485 Corylus avellana HOM05D007300 ORTHO05D009301 3.2e-199 699.1 773 52.7
RcHm_v2.0_Chr5g0012901 Rosa chinensis HOM05D007300 ORTHO05D009301 1.5e-193 680.2 605 58.3
TWI73G0852 Tripterygium wilfordii HOM05D007300 ORTHO05D009301 3.4e-193 679.1 652 55.1
FAN21G2574 Fragaria x ananassa HOM05D007300 ORTHO05D009301 1.7e-192 676.8 607 58.6
Prupe.4G073700 Prunus persica HOM05D007300 ORTHO05D009301 3.8e-192 675.6 617 58.3
GSVIVG01021378001 Vitis vinifera HOM05D007300 ORTHO05D009301 4.9e-192 675.2 620 57.9
TAR627G1006 Trochodendron aralioides HOM05D007300 ORTHO05D009301 1.2e-190 670.6 648 54.0
FvH4_3g06410 Fragaria vesca HOM05D007300 ORTHO05D009301 1.6e-190 670.2 607 58.0
Dinv32299 Davidia involucrata HOM05D007300 ORTHO05D009301 2.1e-190 669.8 618 57.9
ClCG03G007190 Citrullus lanatus HOM05D007300 ORTHO05D009301 4.6e-190 668.7 623 56.8
CSS0020184 Camellia sinensis var. sinensis HOM05D007300 ORTHO05D009301 7.8e-190 667.9 609 58.6
Potri.001G353800 Populus trichocarpa HOM05D007300 ORTHO05D009301 1.7e-189 666.8 667 55.6
Actinidia19486 Actinidia chinensis HOM05D007300 ORTHO05D009301 1.5e-185 653.7 597 58.0
Ciclev10014510m.g Citrus clementina HOM05D007300 ORTHO05D009301 2.0e-185 653.3 667 53.1
MD05G1291800 Malus domestica HOM05D007300 ORTHO05D009301 1.3e-184 650.6 696 52.6
Thecc.06G157700 Theobroma cacao HOM05D007300 ORTHO05D009301 8.4e-184 647.9 654 55.2
CsaV3_1G032780 Cucumis sativus L. HOM05D007300 ORTHO05D009301 5.4e-183 645.2 611 55.3
Gorai.011G040700 Gossypium raimondii HOM05D007300 ORTHO05D009301 4.6e-182 642.1 621 56.2
Gohir.D10G038600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 7.9e-182 641.3 621 56.2
Cpa.g.sc17.110 Carica papaya HOM05D007300 ORTHO05D009301 1.8e-181 640.2 591 54.8
FAN11G2841 Fragaria x ananassa HOM05D007300 ORTHO05D009301 2.3e-181 639.8 668 52.5
Sabra16G0232700 Salix brachista HOM05D007300 ORTHO05D009301 2.3e-181 639.8 667 52.6
CANSAT35G1474 Cannabis sativa HOM05D007300 ORTHO05D009301 6.7e-181 638.3 616 55.8
Gohir.A10G037600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 2.8e-179 632.9 621 55.7
Nitab4.5_0003714g0040 Nicotiana tabacum HOM05D007300 ORTHO05D009301 3.4e-177 625.9 649 53.6
Atru.chr10.1407 Acer truncatum HOM05D007300 ORTHO05D009301 7.6e-177 624.8 558 59.5
Manes.17G064900 Manihot esculenta HOM05D007300 ORTHO05D009301 9.9e-177 624.4 652 52.3
Peaxi162Scf00649g00027 Petunia axillaris HOM05D007300 ORTHO05D009301 2.2e-176 623.2 614 54.9
Atru.chr10.1398 Acer truncatum HOM05D007300 ORTHO05D009301 2.9e-176 622.9 558 59.1
Nitab4.5_0001283g0060 Nicotiana tabacum HOM05D007300 ORTHO05D009301 1.1e-175 620.9 647 53.0
Eucgr.D00343 Eucalyptus grandis HOM05D007300 ORTHO05D009301 1.3e-173 614.0 584 55.3
COL.COLO4_22798 Corchorus olitorius HOM05D007300 ORTHO05D009301 2.3e-173 613.2 619 56.2
HanXRQChr04g0119571 Helianthus annuus HOM05D007300 ORTHO05D009301 3.9e-173 612.5 640 50.6
Oeu021524.1 Olea europaea HOM05D007300 ORTHO05D009301 4.3e-172 609.0 616 52.9
Aqoxy1G01857 Aquilegia oxysepala HOM05D007300 ORTHO05D009301 1.3e-171 607.4 656 50.6
PGSC0003DMG400003073 Solanum tuberosum HOM05D007300 ORTHO05D009301 1.3e-171 607.4 603 53.9
CAN.G257.51 Capsicum annuum HOM05D007300 ORTHO05D009301 3.4e-169 599.4 608 54.4
Lsat_1_v5_gn_7_31040 Lactuca sativa HOM05D007300 ORTHO05D009301 3.4e-169 599.4 643 50.7
Solyc02g071280.3 Solanum lycopersicum HOM05D007300 ORTHO05D009301 7.6e-169 598.2 606 53.5
MBI10_g02388_MAGBIO Magnolia biondii HOM05D007300 ORTHO05D009301 2.9e-168 596.3 605 51.6
Sopen02g020340 Solanum pennellii HOM05D007300 ORTHO05D009301 2.1e-166 590.1 606 53.3
DCAR_027959 Daucus carota HOM05D007300 ORTHO05D009301 8.7e-165 584.7 602 52.5
PSO541G4163 Papaver somniferum HOM05D007300 ORTHO05D009301 7.4e-164 581.6 601 52.4
Lj1C1181T32 Lonicera japonica HOM05D007300 ORTHO05D009301 1.3e-163 580.9 606 53.3
ECA236G2360 Erigeron canadensis HOM05D007300 ORTHO05D009301 5.3e-162 575.5 597 50.4
Duzib235G1110 Durio zibethinus HOM05D007300 ORTHO05D009301 6.9e-162 575.1 616 52.4
SGA_v2.0_scaffold1G00132 Striga asiatica HOM05D007300 ORTHO05D009301 1.3e-160 570.9 604 50.5
Thhalv10000812m.g Eutrema salsugineum HOM05D007300 ORTHO05D009301 3.8e-160 569.3 666 46.8
Migut.M00959 Erythranthe guttata HOM05D007300 ORTHO05D009301 1.4e-159 567.4 655 49.2
CARHR175340 Cardamine hirsuta HOM05D007300 ORTHO05D009301 3.2e-159 566.2 603 49.4
Nn3g20905 Nelumbo nucifera HOM05D007300 ORTHO05D009301 4.2e-159 565.8 583 52.3
PGR044G1273 Punica granatum HOM05D007300 ORTHO05D009301 7.2e-159 565.1 547 54.3
Carub.0008s0147 Capsella rubella HOM05D007300 ORTHO05D009301 3.6e-158 562.8 612 47.5
AT5G46420 Arabidopsis thaliana HOM05D007300 ORTHO05D009301 1.0e-157 561.2 612 47.9
C07p29650 Brassica napus HOM05D007300 ORTHO05D009301 1.1e-156 557.8 632 47.8
BolC7t43517H Brassica oleracea HOM05D007300 ORTHO05D009301 1.9e-156 557.0 632 47.6
A06p45940 Brassica napus HOM05D007300 ORTHO05D009301 3.3e-156 556.2 636 47.0
AL8G11990 Arabidopsis lyrata HOM05D007300 ORTHO05D009301 4.3e-156 555.8 612 47.2
THA.LOC104827733 Tarenaya hassleriana HOM05D007300 ORTHO05D009301 1.7e-155 553.9 660 45.6
SalBow8G1735 Salvia bowleyana HOM05D007300 ORTHO05D009301 2.8e-155 553.1 593 50.3
Sp2g11270 Schrenkiella parvula HOM05D007300 ORTHO05D009301 2.8e-155 553.1 659 46.3
AUR62027555 Chenopodium quinoa HOM05D007300 ORTHO05D009301 8.2e-155 551.6 616 48.4
Aa31LG9G6430 Aethionema arabicum HOM05D007300 ORTHO05D009301 3.1e-154 549.7 658 45.3
BraA06t27457Z Brassica rapa HOM05D007300 ORTHO05D009301 2.0e-153 547.0 622 47.4
Sc05g0006590 Simmondsia chinensis HOM05D007300 ORTHO05D009301 5.9e-153 545.4 658 46.4
AUR62035801 Chenopodium quinoa HOM05D007300 ORTHO05D009301 6.1e-150 535.4 614 47.6
HPP92_023296 Vanilla planifolia HOM05D007300 ORTHO05D009301 2.5e-143 513.5 588 46.4
FAN16G1565 Fragaria x ananassa HOM05D007300 ORTHO05D009301 5.3e-138 495.7 479 56.2
ATR1153G036 Amborella trichopoda HOM05D007300 ORTHO05D009301 2.2e-136 490.3 622 44.1
EL10Ac8g19794 Beta vulgaris HOM05D007300 ORTHO05D009301 1.2e-126 458.0 610 43.6
Sed0024786 Sechium edule HOM05D007300 ORTHO05D009301 5.9e-113 412.5 410 55.6
unitig_92.g28150 Utricularia gibba HOM05D007300 ORTHO05D009301 4.7e-102 376.3 559 40.8
HPP92_023271 Vanilla planifolia HOM05D007300 ORTHO05D009301 8.0e-102 375.6 586 37.0
PSO675G3105 Papaver somniferum HOM05D007300 ORTHO05D009301 1.4e-98 364.8 358 54.5
SEGI_38698 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 3.7e-91 340.1 527 35.3
MELO3C002704.2 Cucumis melo HOM05D007300 ORTHO05D009301 4.9e-83 313.2 355 47.3
Mapoly0019s0078 Marchantia polymorpha HOM05D007300 ORTHO05D009301 1.2e-73 282.0 674 28.3
CDE06G2820 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 3.5e-73 280.4 339 47.2
Zm00001eb296050 Zea mays HOM05D007300 ORTHO05D009301 3.5e-73 280.4 353 43.1
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 2.3e-64 251.1 548 30.5
AagrBONN_evm.TU.Sc2ySwM_228.1844 Anthoceros agrestis HOM05D007300 ORTHO05D004905 1.9e-58 231.5 536 30.4
Os05g0566300 Oryza sativa ssp. japonica HOM05D007300 ORTHO05D009301 1.2e-57 228.8 208 51.0
Zm00001eb349440 Zea mays HOM05D007300 ORTHO05D009301 1.6e-41 175.3 177 49.2
Gorai.004G093400 Gossypium raimondii HOM05D007300 ORTHO05D009301 2.9e-35 154.5 141 54.6
Gohir.D08G088700 Gossypium hirsutum HOM05D007300 ORTHO05D009301 1.9e-34 151.8 141 53.9
SEGI_17563 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 2.3e-32 144.8 126 48.4
MCO05G669 Micromonas commoda HOM05D007300 ORTHO05D009301 9.4e-26 122.9 226 34.1
CDE06G1765 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 9.1e-21 106.3 155 38.1
Cre03.g191950 Chlamydomonas reinhardtii HOM05D007300 ORTHO05D009301 4.5e-20 104.0 215 29.8
Zm00001eb184690 Zea mays HOM05D007300 ORTHO05D009301 7.2e-18 96.7 82 47.6
Pp3c4_17200 Physcomitrium patens HOM05D003927 ORTHO05D004905 5.7e-15 87.0 256 22.7
Haze_26176 Corylus avellana HOM05D003927 ORTHO05D004905 6.3e-06 57.0 139 25.2


User provided reference genes

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