Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 0.0e+00 1236.1 635 100.0
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 3.4e-299 1031.2 636 84.0
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 7.6e-299 1030.0 636 84.3
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 2.7e-272 941.8 550 91.1
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 9.1e-252 873.6 641 72.4
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 1.0e-250 870.2 633 71.2
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 7.2e-249 864.0 645 71.6
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 1.8e-244 849.4 644 71.1
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 4.5e-243 844.7 642 68.7
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 3.2e-241 838.6 626 69.8
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 6.1e-240 834.3 606 72.4
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 2.2e-237 825.9 627 71.0
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 6.3e-229 797.7 631 67.2
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 8.3e-229 797.3 627 67.5
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 4.1e-220 768.5 643 63.0
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 1.6e-219 766.5 638 61.9
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 1.0e-218 763.8 636 61.8
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 1.0e-218 763.8 639 62.4
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 1.3e-218 763.5 638 63.0
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 1.7e-218 763.1 644 61.6
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 1.9e-217 759.6 636 63.5
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 1.4e-215 753.4 644 62.1
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 3.4e-214 748.8 631 62.4
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 4.4e-214 748.4 636 61.9
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.3e-213 746.9 631 62.1
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 8.3e-213 744.2 631 61.8
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 4.6e-211 738.4 639 61.2
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 4.6e-211 738.4 640 60.8
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 3.9e-210 735.3 642 60.3
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 1.2e-208 730.3 634 60.7
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 4.0e-207 725.3 639 60.1
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 8.3e-205 717.6 636 60.8
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 5.4e-204 714.9 636 58.8
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 3.5e-203 712.2 631 61.2
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 2.3e-202 709.5 635 60.8
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 3.9e-202 708.8 631 58.8
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 6.6e-202 708.0 639 60.3
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 1.9e-201 706.4 649 58.9
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 2.5e-201 706.1 633 60.5
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 5.6e-201 704.9 634 59.9
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 1.2e-200 703.7 648 59.7
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 4.7e-200 701.8 618 60.7
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 5.2e-199 698.4 600 60.5
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 8.9e-199 697.6 645 59.7
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 2.6e-198 696.0 643 60.3
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 3.4e-198 695.7 630 57.9
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 4.4e-198 695.3 602 60.1
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 4.4e-198 695.3 643 58.3
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 1.7e-197 693.3 642 58.7
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 8.4e-197 691.0 629 57.4
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.1e-196 690.6 602 60.0
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 5.4e-196 688.3 645 58.6
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 7.1e-196 688.0 637 59.7
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 1.2e-195 687.2 617 59.0
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.1e-195 686.4 638 59.6
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 2.7e-195 686.0 601 59.1
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.6e-195 685.3 635 58.7
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.0e-195 684.9 637 59.5
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 2.3e-194 682.9 637 59.5
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 3.9e-194 682.2 645 60.2
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 1.1e-193 680.6 632 57.4
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 3.3e-193 679.1 643 56.1
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 4.3e-193 678.7 643 57.9
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 1.2e-192 677.2 631 57.4
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 3.6e-192 675.6 647 58.3
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 1.4e-191 673.7 639 57.6
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 3.1e-191 672.5 646 57.9
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 6.9e-191 671.4 648 56.0
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 2.0e-190 669.8 604 57.8
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 3.4e-190 669.1 645 58.6
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.7e-189 666.8 604 57.6
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 2.9e-189 666.0 632 55.9
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 4.9e-189 665.2 633 57.5
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 6.4e-189 664.8 638 56.3
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 2.4e-188 662.9 638 56.9
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 2.4e-188 662.9 602 57.3
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 1.6e-187 660.2 634 57.4
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 2.3e-186 656.4 628 58.0
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 6.6e-186 654.8 630 55.2
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 8.7e-186 654.4 637 57.0
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 8.7e-186 654.4 639 55.2
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 1.1e-185 654.1 635 55.7
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 1.5e-185 653.7 642 56.9
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 4.8e-184 648.7 657 55.3
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 3.1e-183 646.0 636 56.1
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 4.5e-182 642.1 635 56.2
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 4.5e-182 642.1 635 56.2
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 4.9e-181 638.6 637 55.3
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 1.6e-179 633.6 644 55.0
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 1.8e-178 630.2 632 56.8
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 5.1e-178 628.6 635 53.9
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 5.6e-177 625.2 637 56.4
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 7.4e-177 624.8 567 60.5
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 9.6e-177 624.4 633 55.0
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 6.2e-176 621.7 637 54.3
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 1.8e-175 620.2 637 54.2
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 1.8e-175 620.2 637 54.2
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 9.9e-174 614.4 637 54.0
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 1.7e-173 613.6 633 56.7
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 2.2e-173 613.2 637 53.8
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 1.9e-169 600.1 644 53.4
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 2.5e-169 599.7 529 61.6
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 5.6e-169 598.6 644 52.5
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 6.7e-162 575.1 632 52.4
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 6.9e-159 565.1 634 50.6
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 6.9e-159 565.1 557 58.2
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 1.7e-157 560.5 634 49.5
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 2.1e-147 526.9 610 48.4
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 7.0e-143 511.9 540 52.4
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 1.5e-142 510.8 636 46.4
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 3.8e-141 506.1 646 46.4
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 3.2e-140 503.1 607 48.8
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 2.6e-137 493.4 635 46.5
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 4.4e-137 492.7 630 45.2
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 4.5e-134 482.6 650 45.2
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 2.2e-133 480.3 462 56.7
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 1.4e-119 434.5 532 47.7
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 1.6e-118 431.0 486 53.3
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 4.0e-114 416.4 541 46.4
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 4.1e-111 406.4 663 40.7
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 2.0e-110 404.1 405 57.0
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 3.3e-108 396.7 451 51.4
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 2.2e-104 384.0 553 44.3
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 8.6e-101 372.1 466 46.6
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 1.2e-99 368.2 644 38.4
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 1.8e-98 364.4 338 57.7
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.4e-87 328.2 453 44.6
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.5e-86 323.6 351 53.6
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.5e-86 323.6 351 53.6
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 1.1e-82 312.0 295 55.9
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 6.8e-82 309.3 615 34.5
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 4.4e-81 306.6 252 61.1
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 2.8e-75 287.3 578 36.2
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 5.3e-74 283.1 242 60.3
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 4.0e-66 256.9 785 30.2
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 1.7e-64 251.5 201 63.7
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 8.7e-61 239.2 457 37.2
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 2.5e-60 237.7 148 73.6
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 3.3e-60 237.3 405 39.3
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 4.0e-58 230.3 456 36.2
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 6.2e-51 206.5 169 65.1
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 1.3e-43 182.2 531 28.2
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 1.3e-43 182.2 594 28.1
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 7.9e-38 162.9 123 62.6
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 3.0e-37 161.0 540 27.6
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 2.8e-35 154.5 418 32.3
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 7.9e-30 136.3 282 37.9
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 2.3e-21 108.2 60 80.0
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 8.8e-21 106.3 82 62.2
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 9.1e-18 96.3 85 58.8
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 2.6e-17 94.7 232 33.2
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 8.8e-13 79.7 65 67.7
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 5.3e-10 70.5 45 73.3
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 9.1e-10 69.7 66 56.1
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 3.8e-08 64.3 40 67.5


User provided reference genes

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