Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1934.8 967 100.0
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1883.6 967 97.1
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1818.5 967 94.0
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1814.3 967 94.1
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1769.6 970 90.6
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1767.3 968 90.8
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1755.3 969 90.0
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1753.8 967 90.2
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1736.9 970 89.2
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1731.1 967 88.8
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1728.0 1001 87.0
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1724.9 971 88.9
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1616.3 971 83.8
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1615.9 973 83.7
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1612.4 977 82.9
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1600.9 972 82.7
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1598.9 971 83.2
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1595.9 971 83.1
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1594.7 960 83.6
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1592.4 971 81.5
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1592.0 960 83.3
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1591.2 971 82.6
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1590.9 972 81.8
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1590.1 971 82.7
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1588.2 971 81.8
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1585.1 971 82.4
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1583.2 960 83.0
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1582.0 972 82.2
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1577.4 959 82.6
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1577.0 958 82.9
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1576.2 955 83.0
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1575.1 955 82.9
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1573.9 955 82.9
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1573.9 975 81.1
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1573.5 952 82.4
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1572.0 970 80.6
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1571.2 970 80.8
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1570.8 970 82.2
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1568.9 972 81.0
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1568.9 972 81.0
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1567.7 955 82.6
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1567.4 970 81.3
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1565.8 962 81.5
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1562.4 971 81.1
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1562.0 971 81.1
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1561.2 955 81.3
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1560.8 955 82.3
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1560.0 971 81.3
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1560.0 971 79.6
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1559.3 948 82.1
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1556.2 970 79.9
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1548.9 971 79.0
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1545.4 976 79.7
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1541.9 967 79.8
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1531.9 972 78.7
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1526.9 971 79.1
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1522.7 971 78.6
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1522.7 972 78.3
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1515.0 972 78.0
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1514.6 969 78.1
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1511.1 970 77.6
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1511.1 972 77.9
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1510.7 972 77.4
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1510.7 972 77.5
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1509.6 972 77.4
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1506.1 965 77.7
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1502.3 844 88.6
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1500.7 971 77.3
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1498.4 960 78.4
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1498.4 968 77.7
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1498.0 951 78.3
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1493.4 972 75.7
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1490.7 969 76.8
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1488.4 974 77.1
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1487.6 969 77.7
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1484.9 984 76.2
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1484.2 954 78.4
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1483.4 951 77.3
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1483.4 951 77.3
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1481.1 972 75.2
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1480.3 972 77.5
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1479.9 969 77.3
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1478.8 951 77.2
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1478.8 953 76.9
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1478.4 969 77.3
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1478.4 971 76.2
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1474.1 951 77.0
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1473.8 951 76.9
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1473.8 951 76.9
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1473.4 954 77.0
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1469.1 969 76.7
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1468.8 951 76.7
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1468.4 950 77.1
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1466.8 954 76.2
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1466.1 963 77.4
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1463.4 953 76.6
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1462.6 953 75.9
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1456.0 953 75.8
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1454.1 979 76.9
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1447.2 963 74.8
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1435.2 955 74.9
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1416.7 966 74.1
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1400.2 952 71.6
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1399.8 958 71.5
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1376.7 842 82.5
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1364.0 733 91.1
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1352.8 964 69.8
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1337.0 976 68.9
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1304.7 862 75.6
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1295.8 952 70.7
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1208.4 970 65.9
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1181.0 1006 59.7
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1171.0 971 60.6
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1147.5 711 79.9
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1115.1 1015 56.3
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1101.3 948 59.8
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1079.3 678 80.2
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 6.6e-312 1074.3 642 83.0
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 1.6e-276 956.4 718 67.5
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 3.3e-221 772.7 787 50.7
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 2.2e-209 733.4 473 77.0
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.6e-186 657.5 442 71.9
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.3e-124 451.8 313 69.3
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 1.3e-113 415.2 634 39.3
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 1.5e-112 411.8 1092 27.5
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 1.8e-97 361.7 209 86.1
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.8e-73 282.0 209 69.9
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.0e-61 241.9 183 67.8
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 1.7e-55 222.2 301 44.9
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.6e-50 205.7 125 81.6
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 3.0e-44 184.9 134 70.9
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 5.8e-40 170.6 202 46.0
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 7.1e-38 163.7 139 61.2
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.7e-28 132.5 64 93.8
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 1.5e-16 92.8 80 65.0
Dinv05834 Davidia involucrata HOM05D005707 ORTHO05D181672 5.5e-06 57.8 150 38.0


User provided reference genes

Program Settings