Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 2602.8 1270 100.0
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 2486.4 1270 95.2
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 2463.3 1271 93.7
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 2419.8 1272 91.7
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 2328.9 1268 88.2
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 2285.0 1269 86.8
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 2266.1 1268 86.0
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 2244.9 1269 84.8
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 2234.5 1268 84.9
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 2228.8 1268 84.8
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 2143.2 1268 80.7
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 2142.9 1268 80.6
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 2008.4 1269 76.4
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1998.8 1268 75.6
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1982.2 1275 75.2
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1979.5 1268 74.8
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1976.4 1272 74.9
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1973.7 1268 74.8
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1973.4 1268 74.7
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1946.0 1271 74.0
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1945.6 1275 73.6
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1939.9 1273 73.5
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1936.0 1274 72.9
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1932.9 1270 73.9
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1925.6 1270 73.9
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1921.0 1270 73.1
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1921.0 1270 72.7
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1919.8 1283 72.4
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1911.0 1272 72.2
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1910.6 1275 72.6
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1906.7 1273 72.2
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1903.6 1275 71.7
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1897.9 1274 72.1
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1895.6 1237 74.6
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1891.7 1275 70.8
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1883.6 1273 71.6
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1883.2 1273 71.6
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1877.8 1275 71.1
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1877.4 1273 71.3
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1874.0 1299 70.3
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1869.4 1283 70.3
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1839.7 1269 70.3
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1824.3 1274 69.5
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1823.9 1271 69.7
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1813.1 1274 69.5
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1810.8 1273 68.5
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1803.9 1276 68.9
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1791.9 1267 68.3
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1791.5 1282 67.8
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1789.2 1243 69.0
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1784.6 1275 67.8
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1781.1 1272 67.8
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1781.1 1280 67.7
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1778.1 1271 67.1
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1775.0 1274 67.7
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1774.2 1277 67.7
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1768.1 1274 67.0
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1766.1 1273 67.7
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1764.2 1276 67.4
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1757.7 1350 63.3
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1757.3 1375 62.5
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1744.2 1273 66.8
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1744.2 1273 66.8
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1734.9 1273 66.6
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1731.5 1275 66.0
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1724.5 1274 66.6
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1723.4 1274 66.7
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1717.2 1269 66.2
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1716.8 1280 66.4
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1714.9 1276 66.3
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1704.9 1275 65.1
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1704.5 1282 66.0
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1704.5 1272 64.9
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1699.9 1271 65.2
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1697.9 1270 64.7
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1691.4 1280 65.5
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1687.2 1272 63.2
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1683.3 1272 63.2
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1671.4 1368 61.2
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1671.0 1205 67.1
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1662.1 1273 63.0
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1660.2 1187 69.0
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1656.7 1272 62.7
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1636.3 1180 66.9
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1618.6 1267 63.5
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1601.3 1271 62.4
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1575.1 1025 75.1
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1556.2 1042 71.5
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1524.6 1043 70.2
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1524.6 1271 58.7
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1489.9 1269 57.0
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1479.5 1048 68.2
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1478.8 1265 60.2
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1404.0 1269 55.4
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1399.8 1268 58.0
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1338.2 1219 54.4
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1286.2 1180 55.5
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1256.5 940 65.9
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1214.1 808 74.5
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1205.3 832 68.9
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1201.0 829 68.8
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1198.7 941 63.7
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1184.1 877 63.6
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1148.7 833 64.6
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 0.0e+00 1144.0 1189 50.6
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1130.2 941 60.9
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1120.5 1326 46.8
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1116.3 1307 47.1
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 0.0e+00 1101.7 778 66.6
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1088.6 758 68.9
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1088.6 1327 45.6
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1083.9 1331 46.4
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 3.3e-301 1038.9 690 72.0
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 5.6e-301 1038.1 758 68.1
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 8.9e-299 1030.8 1148 48.9
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 4.1e-235 819.3 1507 35.8
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 5.3e-235 818.9 622 64.8
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 2.4e-227 793.5 563 67.5
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.3e-217 761.1 500 73.4
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 5.7e-205 719.2 614 54.6
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 5.9e-194 682.6 502 63.1
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 2.8e-191 673.7 465 72.7
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 3.5e-138 497.3 358 69.8
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 1.6e-135 488.4 317 74.8
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 5.3e-134 483.4 392 62.8
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 7.4e-128 463.0 365 63.3
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 7.7e-101 373.2 1327 27.2
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 2.2e-87 328.6 259 62.5
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 4.3e-83 314.3 1234 25.9
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 7.8e-53 213.8 270 45.6
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 6.4e-47 194.1 145 62.8
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 1.4e-46 193.0 156 63.5
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 4.2e-30 138.3 101 68.3
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 2.6e-24 119.0 78 67.9
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.9e-14 86.3 46 89.1
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 1.9e-14 86.3 68 57.4
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 1.6e-13 83.2 53 73.6
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 3.6e-13 82.0 53 71.7
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 3.9e-12 78.6 56 66.1
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 1.3e-10 73.6 48 70.8
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 1.3e-10 73.6 48 72.9
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 1.3e-10 73.6 48 72.9
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 2.2e-10 72.8 48 70.8
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 2.2e-10 72.8 50 66.0
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 4.8e-10 71.6 48 68.8
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 4.8e-10 71.6 48 68.8
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 4.8e-10 71.6 48 68.8
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 4.8e-10 71.6 48 68.8
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 4.8e-10 71.6 48 68.8
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 1.1e-09 70.5 44 75.0
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 5.3e-09 68.2 144 33.3
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 5.3e-09 68.2 152 30.3
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 5.3e-09 68.2 95 36.8
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 3.4e-08 65.5 147 34.0
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 5.9e-08 64.7 80 46.2
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 1.0e-07 63.9 67 41.8
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 1.7e-07 63.2 118 33.9
A05p26160 Brassica napus HOM05D004874 ORTHO05D014502 6.5e-07 61.2 50 60.0
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 6.5e-07 61.2 118 34.7
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 6.5e-07 61.2 118 33.1
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 8.5e-07 60.8 181 30.4
CBR_g30766 Chara braunii HOM05D000019 ORTHO05D000048 2.5e-06 59.3 88 35.2
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 3.2e-06 58.9 196 29.1


User provided reference genes

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