Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 2613.2 1270 100.0
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 2493.0 1270 95.2
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 2476.8 1271 94.3
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 2436.8 1272 92.5
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 2341.6 1268 88.8
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 2294.2 1269 87.2
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 2276.5 1268 86.3
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 2265.3 1269 85.4
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 2247.6 1268 85.7
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 2247.6 1268 85.3
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 2162.9 1268 81.5
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 2161.7 1268 81.3
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 2034.2 1269 77.2
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 2000.7 1268 75.5
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1986.8 1275 75.1
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1986.5 1269 75.0
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1984.1 1272 75.2
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1980.7 1269 75.0
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1979.9 1269 74.9
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1948.3 1275 73.5
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1943.7 1271 73.9
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1937.5 1273 73.4
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1936.4 1270 74.2
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1934.1 1277 72.4
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1932.1 1270 73.4
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1930.6 1270 74.0
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1927.1 1275 73.2
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1921.7 1270 72.6
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1917.9 1283 72.2
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1917.5 1272 72.5
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1914.8 1273 72.5
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1907.9 1275 71.2
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1905.6 1274 72.2
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1897.1 1237 74.6
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1896.3 1273 72.0
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1893.6 1275 71.3
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1892.1 1273 71.9
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1890.9 1275 71.2
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1885.9 1273 71.6
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1882.1 1299 70.6
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1862.0 1269 70.8
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1860.9 1283 70.0
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1847.8 1271 70.5
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1816.2 1274 68.9
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1808.9 1243 69.2
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1807.7 1275 68.7
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1807.0 1276 68.9
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1803.5 1273 68.1
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1793.1 1275 67.8
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1791.9 1272 67.7
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1789.6 1272 67.9
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1789.2 1280 67.6
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1786.5 1282 67.3
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1785.4 1270 67.8
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1783.5 1273 67.2
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1776.5 1277 67.3
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1775.8 1274 67.3
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1771.1 1350 63.4
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1764.2 1273 67.2
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1763.8 1375 62.7
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1763.4 1276 66.9
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1753.4 1273 66.8
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1752.3 1273 66.5
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1731.5 1276 66.1
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1731.5 1274 65.9
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1726.5 1272 65.3
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1724.1 1269 65.9
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1723.8 1276 66.0
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1722.2 1274 66.1
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1720.3 1274 66.1
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1720.3 1275 65.2
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1714.9 1270 64.9
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1714.5 1282 65.8
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1713.7 1280 65.8
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1708.7 1278 66.0
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1702.6 1271 65.2
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1701.4 1272 63.6
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1699.1 1272 63.7
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1685.2 1272 63.2
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1677.9 1370 61.2
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1675.6 1273 63.2
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1673.7 1184 69.3
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1666.0 1206 66.5
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1634.8 1267 63.9
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1630.5 1180 66.4
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1615.1 1271 62.8
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1595.5 1025 75.5
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1567.0 1042 71.7
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1539.2 1270 58.9
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1538.9 1043 70.5
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1485.3 1048 68.1
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1479.5 1269 56.5
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1477.2 1265 60.2
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1424.8 1269 55.8
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1401.3 1269 58.1
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1326.6 1202 54.3
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1298.9 1162 56.2
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1265.0 940 66.3
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1221.1 808 74.6
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1218.8 832 69.7
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1209.1 829 69.5
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1199.1 941 63.8
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1192.6 877 64.1
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 0.0e+00 1165.2 1192 51.0
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1143.3 835 64.4
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1130.5 941 61.0
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1129.4 1261 48.3
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1127.5 1327 46.6
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1110.1 1330 46.1
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 0.0e+00 1105.5 778 66.6
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1098.6 758 69.3
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1088.2 1330 46.2
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.6e-303 1046.6 690 72.2
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 5.0e-302 1041.6 758 68.1
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 6.6e-302 1041.2 1148 49.0
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 3.7e-236 822.8 1462 35.8
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 3.1e-235 819.7 622 64.6
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 1.1e-229 801.2 563 67.7
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.8e-220 770.0 500 74.0
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.1e-208 731.5 614 55.0
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 8.3e-196 688.7 502 63.9
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 6.2e-191 672.5 464 72.2
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 3.5e-138 497.3 358 69.8
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 3.7e-135 487.3 317 74.1
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 9.0e-134 482.6 392 62.2
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 3.1e-126 457.6 334 66.5
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 3.5e-101 374.4 1331 26.9
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 4.1e-86 324.3 261 61.7
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 3.8e-84 317.8 1233 25.1
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 3.9e-52 211.5 270 46.3
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 7.6e-48 197.2 156 64.1
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 9.9e-48 196.8 145 62.8
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 7.6e-32 144.1 112 66.1
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 2.0e-24 119.4 78 67.9
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 1.9e-14 86.3 68 55.9
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 4.2e-14 85.1 46 87.0
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 1.6e-13 83.2 53 73.6
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 3.6e-13 82.0 53 71.7
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 3.9e-12 78.6 56 66.1
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 9.7e-11 73.9 48 70.8
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 9.7e-11 73.9 48 72.9
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 9.7e-11 73.9 48 72.9
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 1.7e-10 73.2 48 70.8
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 2.2e-10 72.8 50 66.0
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 3.7e-10 72.0 48 68.8
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 3.7e-10 72.0 48 68.8
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 3.7e-10 72.0 48 68.8
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 3.7e-10 72.0 48 68.8
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 3.7e-10 72.0 48 68.8
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 1.1e-09 70.5 44 75.0
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 3.1e-09 68.9 95 36.8
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 4.1e-09 68.6 152 30.3
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 6.9e-09 67.8 135 34.8
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 4.5e-08 65.1 96 39.6
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 7.7e-08 64.3 80 46.2
A05p26160 Brassica napus HOM05D004874 ORTHO05D014502 1.7e-07 63.2 50 60.0
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 1.7e-07 63.2 118 33.1
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 3.8e-07 62.0 118 35.6
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 3.8e-07 62.0 118 33.9
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 8.5e-07 60.8 196 30.1
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 1.4e-06 60.1 181 29.8
CBR_g30766 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-06 59.7 88 35.2
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 5.5e-06 58.2 64 42.2


User provided reference genes

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