Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1936.0 966 100.0
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1883.6 967 97.1
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1820.4 966 94.1
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1813.5 966 93.9
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1755.0 970 89.8
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1753.8 968 90.0
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1749.6 966 89.9
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1741.9 969 89.3
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1723.8 1000 86.7
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1717.6 970 88.1
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1712.6 967 88.0
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1711.0 971 88.2
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1614.0 970 83.3
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1613.6 972 83.1
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1605.5 976 82.4
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1598.6 970 83.0
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1596.3 970 81.4
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1595.5 970 82.9
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1592.4 971 82.3
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1589.7 970 82.5
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1585.5 970 81.6
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1585.5 971 81.4
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1582.8 959 83.0
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1582.0 970 81.8
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1580.1 971 81.9
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1579.7 970 81.8
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1579.3 959 82.5
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1576.6 958 82.6
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1573.5 969 80.7
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1570.8 959 82.4
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1570.4 969 80.7
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1568.9 974 80.9
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1568.1 957 82.3
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1567.4 954 82.3
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1567.4 969 81.8
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1566.2 954 82.2
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1566.2 951 82.1
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1565.1 954 82.2
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1562.4 969 81.0
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1562.4 970 80.8
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1562.4 958 81.1
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1560.4 969 80.2
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1559.7 971 80.7
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1559.7 971 80.7
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1559.7 970 80.5
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1557.0 970 79.6
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1556.6 958 81.3
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1554.7 954 81.7
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1553.5 970 80.7
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1552.0 954 81.6
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1551.6 947 81.6
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1546.6 970 79.2
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1542.3 966 79.8
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1535.4 975 79.3
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1530.4 976 78.5
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1521.5 970 78.7
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1518.8 971 78.2
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1517.3 968 78.3
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1515.7 970 78.4
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1514.6 971 77.8
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1509.2 971 77.5
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1507.7 971 77.9
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1505.7 969 77.3
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1504.6 971 77.0
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1504.2 971 77.0
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1500.3 964 77.5
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1496.1 950 78.4
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1494.9 965 77.7
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1493.4 959 78.1
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1492.2 970 77.0
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1485.3 844 87.8
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1484.5 964 77.3
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1483.4 971 75.0
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1480.7 968 77.4
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1480.7 973 76.8
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1475.7 950 76.8
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1475.7 950 76.8
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1474.9 953 77.6
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1474.9 983 75.5
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1473.8 962 77.5
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1473.8 967 76.7
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1473.4 971 74.7
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1473.0 959 77.3
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1472.6 958 77.0
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1472.2 970 76.7
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1471.1 950 76.5
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1469.5 952 76.3
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1466.4 950 76.3
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1466.1 950 76.2
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1466.1 950 76.2
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1462.2 953 75.9
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1461.8 968 76.3
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1461.4 949 76.5
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1461.0 950 76.0
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1456.8 962 77.0
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1456.8 952 75.5
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1456.4 952 76.2
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1451.0 978 76.7
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1449.9 952 75.4
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1439.5 964 74.4
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1432.9 966 74.5
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1409.8 965 73.8
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1391.7 957 70.8
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1386.3 965 70.4
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1370.5 841 82.4
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1356.7 733 90.6
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1343.6 953 70.1
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1338.9 968 69.0
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1295.0 861 75.4
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1288.1 965 69.9
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1203.3 969 66.0
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1174.1 1007 59.7
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1172.5 970 60.8
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1146.3 711 79.7
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1109.7 1030 56.0
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1094.0 947 59.6
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 4.6e-311 1071.2 677 79.6
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 7.2e-309 1063.9 641 82.2
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 8.9e-275 950.7 718 67.1
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 6.3e-220 768.5 779 51.1
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 1.9e-208 730.3 472 77.3
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 7.7e-186 655.2 442 72.2
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.3e-124 451.8 312 69.9
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 6.3e-111 406.4 634 38.8
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 2.4e-110 404.4 1092 27.5
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 4.4e-96 357.1 208 85.6
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 4.4e-72 277.3 209 68.9
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.4e-62 245.0 183 68.9
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 6.4e-55 220.3 301 44.2
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 5.0e-52 210.7 125 83.2
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 7.0e-46 190.3 134 71.6
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 3.1e-41 174.9 202 47.0
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 2.1e-37 162.2 139 60.4
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 7.8e-29 133.7 64 95.3
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 1.5e-16 92.8 80 65.0


User provided reference genes

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