Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01030124001 Vitis vinifera HOM05D006371 ORTHO05D008309 0.0e+00 1870.1 935 100.0
Cfa014202 Carpinus fangiana HOM05D006371 ORTHO05D008309 0.0e+00 1281.5 986 67.1
CiPaw.03G283700 Carya illinoinensis HOM05D006371 ORTHO05D008309 0.0e+00 1261.9 1002 66.2
QL04p067039 Quercus lobata HOM05D006371 ORTHO05D008309 0.0e+00 1251.5 1021 64.8
Nn1g07560 Nelumbo nucifera HOM05D006371 ORTHO05D008309 0.0e+00 1197.6 1013 64.1
MD09G1130200 Malus domestica HOM05D006371 ORTHO05D008309 0.0e+00 1189.5 1035 63.0
Ciclev10014166m.g Citrus clementina HOM05D006371 ORTHO05D008309 0.0e+00 1182.5 969 65.4
RcHm_v2.0_Chr2g0155641 Rosa chinensis HOM05D006371 ORTHO05D008309 0.0e+00 1174.5 1040 62.1
Gohir.A11G148000 Gossypium hirsutum HOM05D006371 ORTHO05D008309 0.0e+00 1173.7 1020 63.8
TWI36G0955 Tripterygium wilfordii HOM05D006371 ORTHO05D008309 0.0e+00 1169.5 1037 61.8
Gorai.007G165100 Gossypium raimondii HOM05D006371 ORTHO05D008309 0.0e+00 1160.6 1014 63.3
Duzib133G1082 Durio zibethinus HOM05D006371 ORTHO05D008309 0.0e+00 1156.7 960 63.9
Gohir.D11G154800 Gossypium hirsutum HOM05D006371 ORTHO05D008309 0.0e+00 1156.7 1017 63.0
FAN14G0004 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1156.4 1042 61.8
Duzib211G0069 Durio zibethinus HOM05D006371 ORTHO05D008309 0.0e+00 1156.0 1018 61.5
FvH4_6g40410 Fragaria vesca HOM05D006371 ORTHO05D008309 0.0e+00 1155.6 1042 61.8
Manes.12G064500 Manihot esculenta HOM05D006371 ORTHO05D008309 0.0e+00 1152.1 949 63.6
FAN02G4613 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1150.6 1040 61.6
TAR627G0565 Trochodendron aralioides HOM05D006371 ORTHO05D008309 0.0e+00 1150.6 920 67.4
Glyma.14G190200 Glycine max HOM05D006371 ORTHO05D008309 0.0e+00 1149.8 971 63.1
FAN05G5438 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1145.2 1043 61.3
PSO541G0072 Papaver somniferum HOM05D006371 ORTHO05D008309 0.0e+00 1142.9 1007 61.4
Prupe.3G194900 Prunus persica HOM05D006371 ORTHO05D008309 0.0e+00 1138.6 967 63.4
CANSAT64G2089 Cannabis sativa HOM05D006371 ORTHO05D008309 0.0e+00 1137.9 1024 62.0
PSO675G4792 Papaver somniferum HOM05D006371 ORTHO05D008309 0.0e+00 1137.1 1006 61.3
MELO3C024185.2 Cucumis melo HOM05D006371 ORTHO05D008309 0.0e+00 1135.9 1007 61.7
Sabra14G0129800 Salix brachista HOM05D006371 ORTHO05D008309 0.0e+00 1135.2 1028 60.4
Eucgr.A01367 Eucalyptus grandis HOM05D006371 ORTHO05D008309 0.0e+00 1134.8 966 61.8
Potri.014G170300 Populus trichocarpa HOM05D006371 ORTHO05D008309 0.0e+00 1134.8 954 63.6
Glyma.02G223400 Glycine max HOM05D006371 ORTHO05D008309 0.0e+00 1133.2 994 61.8
arahy.Tifrunner.gnm1.ann1.YIC3VW Arachis hypogaea HOM05D006371 ORTHO05D008309 0.0e+00 1131.7 1004 61.6
PGR031G1410 Punica granatum HOM05D006371 ORTHO05D008309 0.0e+00 1130.5 1018 60.7
arahy.Tifrunner.gnm1.ann1.BM1T67 Arachis hypogaea HOM05D006371 ORTHO05D008309 0.0e+00 1128.2 986 62.2
Lalb_Chr04g0252451 Lupinus albus HOM05D006371 ORTHO05D008309 0.0e+00 1127.1 979 62.3
LjContig00155g0006571 Lotus japonicus HOM05D006371 ORTHO05D008309 0.0e+00 1122.8 992 61.1
CsaV3_2G010080 Cucumis sativus L. HOM05D006371 ORTHO05D008309 0.0e+00 1112.4 1003 61.3
FAN09G0519 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1095.9 961 62.6
Thecc.01G199300 Theobroma cacao HOM05D006371 ORTHO05D008309 0.0e+00 1093.6 1001 60.0
Aqoxy3G02224 Aquilegia oxysepala HOM05D006371 ORTHO05D008309 0.0e+00 1080.9 928 62.7
Actinidia02362 Actinidia chinensis HOM05D006371 ORTHO05D008309 3.8e-307 1058.1 961 60.1
Ca_05557_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 3.2e-306 1055.0 965 59.2
THA.LOC104808834 Tarenaya hassleriana HOM05D006371 ORTHO05D008309 2.7e-305 1052.0 1024 56.8
CSS0032100 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 8.0e-305 1050.4 898 63.9
Dinv40160 Davidia involucrata HOM05D006371 ORTHO05D008309 1.2e-303 1046.6 951 62.1
AL3G41970 Arabidopsis lyrata HOM05D006371 ORTHO05D008309 1.4e-301 1039.6 1000 57.5
Carub.0003s2599 Capsella rubella HOM05D006371 ORTHO05D008309 1.2e-300 1036.6 1004 57.5
TPR.G13852 Trifolium pratense HOM05D006371 ORTHO05D008309 1.6e-300 1036.2 979 58.1
Aa31sc575G10 Aethionema arabicum HOM05D006371 ORTHO05D008309 7.7e-300 1033.9 1016 56.3
CARHR102110 Cardamine hirsuta HOM05D006371 ORTHO05D008309 2.9e-299 1031.9 997 57.3
Thhalv10002385m.g Eutrema salsugineum HOM05D006371 ORTHO05D008309 5.0e-299 1031.2 1017 56.6
Sp3g23150 Schrenkiella parvula HOM05D006371 ORTHO05D008309 6.6e-299 1030.8 1018 56.6
COL.COLO4_19652 Corchorus olitorius HOM05D006371 ORTHO05D008309 1.6e-297 1026.2 887 62.9
BcaB06g26772 Brassica carinata HOM05D006371 ORTHO05D008309 6.1e-297 1024.2 1012 56.0
BraA07t28469Z Brassica rapa HOM05D006371 ORTHO05D008309 4.0e-296 1021.5 1029 56.2
A07p06760 Brassica napus HOM05D006371 ORTHO05D008309 6.8e-296 1020.8 1012 56.8
BcaC06g35860 Brassica carinata HOM05D006371 ORTHO05D008309 1.5e-295 1019.6 1021 56.3
C07p10340 Brassica napus HOM05D006371 ORTHO05D008309 2.8e-294 1015.4 1022 56.3
BolC7t41483H Brassica oleracea HOM05D006371 ORTHO05D008309 7.0e-293 1010.7 1034 55.8
Medtr5g069430 Medicago truncatula HOM05D006371 ORTHO05D008309 1.6e-292 1009.6 1000 56.4
Dinv08538 Davidia involucrata HOM05D006371 ORTHO05D008309 1.7e-291 1006.1 851 64.7
Psat2g060760 Pisum sativum HOM05D006371 ORTHO05D008309 2.5e-290 1002.3 978 57.2
ATR0751G221 Amborella trichopoda HOM05D006371 ORTHO05D008309 3.2e-285 985.3 1044 53.8
Cc07_g11500 Coffea canephora HOM05D006371 ORTHO05D008309 6.4e-278 961.1 966 57.0
Lj4C228G6 Lonicera japonica HOM05D006371 ORTHO05D008309 1.1e-274 950.3 1012 54.2
HPP92_003032 Vanilla planifolia HOM05D006371 ORTHO05D008309 1.7e-270 936.4 1025 53.6
Sed0018275 Sechium edule HOM05D006371 ORTHO05D008309 4.9e-270 934.9 800 64.8
Sc07g0001260 Simmondsia chinensis HOM05D006371 ORTHO05D008309 6.6e-267 924.5 941 56.4
Migut.D00896 Erythranthe guttata HOM05D006371 ORTHO05D008309 2.4e-264 916.0 917 58.7
EL10Ac6g13348 Beta vulgaris HOM05D006371 ORTHO05D008309 9.3e-261 904.0 968 53.7
Oeu049652.2 Olea europaea HOM05D006371 ORTHO05D008309 2.3e-259 899.4 972 55.6
Ah.02g129050 Amaranthus hybridus HOM05D006371 ORTHO05D008309 4.0e-256 888.6 805 62.0
ECA232G0409 Erigeron canadensis HOM05D006371 ORTHO05D008309 1.5e-255 886.7 909 57.6
SalBow7G3887 Salvia bowleyana HOM05D006371 ORTHO05D008309 2.0e-255 886.3 948 56.0
MSTRG.10896 Avicennia marina HOM05D006371 ORTHO05D008309 2.6e-255 885.9 734 66.9
Os08g0323600 Oryza sativa ssp. japonica HOM05D006371 ORTHO05D008309 2.2e-254 882.9 1011 48.7
Solyc02g083140.3 Solanum lycopersicum HOM05D006371 ORTHO05D008309 1.6e-252 876.7 819 60.6
HanXRQChr09g0256951 Helianthus annuus HOM05D006371 ORTHO05D008309 3.5e-252 875.5 894 57.0
AUR62039632 Chenopodium quinoa HOM05D006371 ORTHO05D008309 1.0e-251 874.0 723 65.6
PGSC0003DMG400001545 Solanum tuberosum HOM05D006371 ORTHO05D008309 1.0e-251 874.0 821 60.8
Sopen02g027900 Solanum pennellii HOM05D006371 ORTHO05D008309 1.3e-251 873.6 822 60.5
MBI15_g38530_MAGBIO Magnolia biondii HOM05D006371 ORTHO05D008309 2.1e-249 866.3 773 61.7
Lsat_1_v5_gn_4_142580 Lactuca sativa HOM05D006371 ORTHO05D008309 3.1e-248 862.4 927 55.4
ECA238G3451 Erigeron canadensis HOM05D006371 ORTHO05D008309 5.4e-245 851.7 874 57.8
CAN.G890.8 Capsicum annuum HOM05D006371 ORTHO05D008309 1.2e-244 850.5 657 68.5
AT2G04270 Arabidopsis thaliana HOM05D006371 ORTHO05D008309 8.7e-243 844.3 716 64.9
Peaxi162Scf00300g00515 Petunia axillaris HOM05D006371 ORTHO05D008309 1.6e-241 840.1 896 55.9
Phvul.008G190000 Phaseolus vulgaris HOM05D006371 ORTHO05D008309 2.4e-240 836.3 792 58.6
Cpa.g.sc136.51 Carica papaya HOM05D006371 ORTHO05D008309 1.7e-238 830.1 595 73.3
ClCG02G003000 Citrullus lanatus HOM05D006371 ORTHO05D008309 7.9e-236 821.2 820 57.9
AUR62040011 Chenopodium quinoa HOM05D006371 ORTHO05D008309 5.1e-235 818.5 700 64.4
Nitab4.5_0005413g0050 Nicotiana tabacum HOM05D006371 ORTHO05D008309 2.8e-233 812.8 800 58.1
Hund03659 Selenicereus undatus HOM05D006371 ORTHO05D008309 5.8e-231 805.1 981 48.3
SGA_v2.0_scaffold68G22808 Striga asiatica HOM05D006371 ORTHO05D008309 6.3e-217 758.4 948 49.7
Zm00001eb038720 Zea mays HOM05D006371 ORTHO05D008309 4.1e-216 755.7 659 61.6
Haze_12588 Corylus avellana HOM05D006371 ORTHO05D008309 2.0e-215 753.4 713 57.2
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 7.2e-213 745.0 675 62.8
Atru.chr6.3429 Acer truncatum HOM05D006371 ORTHO05D008309 4.8e-209 732.3 685 58.1
Hund03661 Selenicereus undatus HOM05D006371 ORTHO05D008309 4.5e-207 725.7 1000 45.7
CDE02G2282 Ceratophyllum demersum HOM05D006371 ORTHO05D008309 1.1e-202 711.1 801 51.6
vmacro20507 Vaccinium macrocarpon HOM05D006371 ORTHO05D008309 1.0e-190 671.4 1003 45.0
Hma1.2p1_0315F.1_g122770 Hydrangea macrophylla HOM05D006371 ORTHO05D008309 6.5e-190 668.7 715 53.7
Mapoly0111s0056 Marchantia polymorpha HOM05D006371 ORTHO05D008309 4.3e-173 612.8 883 41.6
AagrBONN_evm.TU.Sc2ySwM_368.983 Anthoceros agrestis HOM05D006371 ORTHO05D008309 8.0e-172 608.6 845 42.4
Rhsim10G0203500 Rhododendron simsii HOM05D006371 ORTHO05D008309 1.9e-160 570.9 1113 38.4
DCAR_023137 Daucus carota HOM05D006371 ORTHO05D008309 2.5e-157 560.5 634 53.8
Nitab4.5_0023804g0010 Nicotiana tabacum HOM05D006371 ORTHO05D008309 6.6e-150 535.8 593 53.6
Pp3c4_14910 Physcomitrium patens HOM05D006371 ORTHO05D008309 1.7e-142 511.1 682 44.0
SMO117G0275 Selaginella moellendorffii HOM05D006371 ORTHO05D008309 1.1e-131 475.3 504 52.4
Haze_12589 Corylus avellana HOM05D006371 ORTHO05D008309 1.6e-103 381.7 425 53.2
SEGI_21719 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 2.4e-67 261.5 217 63.1
AUR62026198 Chenopodium quinoa HOM05D006371 ORTHO05D008309 1.4e-62 245.7 187 67.4
Ca_28887_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 2.2e-52 211.8 387 33.3
MD17G1105600 Malus domestica HOM05D006371 ORTHO05D008309 7.0e-51 206.8 577 32.6
MCO12G287 Micromonas commoda HOM05D006371 ORTHO05D008309 2.8e-39 168.3 315 33.7
SEGI_30134 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 4.6e-26 124.4 535 26.9
CBR_g28919 Chara braunii HOM05D006371 ORTHO05D000048 7.3e-24 117.1 123 52.8
MD17G1105400 Malus domestica HOM05D006371 ORTHO05D008309 3.6e-23 114.8 87 67.8
CSS0035540 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 7.6e-21 107.1 104 51.9
SEGI_19700 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 3.8e-20 104.8 74 70.3
FAN09G2267 Fragaria x ananassa HOM05D006371 ORTHO05D008309 1.8e-17 95.9 71 54.9
CBR_g28910 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-16 93.2 102 50.0
AUR62026199 Chenopodium quinoa HOM05D000691 ORTHO05D000378 1.6e-15 89.4 116 46.6
MD17G1105500 Malus domestica HOM05D006371 ORTHO05D008309 1.2e-10 73.2 41 90.2
AUR62026201 Chenopodium quinoa HOM05D006371 ORTHO05D008309 3.9e-09 68.2 38 89.5
CBR_g28922 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-08 66.2 244 27.5
Peaxi162Scf00141g00342 Petunia axillaris HOM05D003809 ORTHO05D003935 8.2e-07 60.5 177 28.2
FAN02G0645 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.4e-06 59.7 79 32.9
Hma1.2p1_0053F.1_g030840 Hydrangea macrophylla HOM05D001486 ORTHO05D017058 1.8e-06 59.3 45 62.2
Nitab4.5_0008420g0020 Nicotiana tabacum HOM05D003809 ORTHO05D003935 1.8e-06 59.3 216 26.9
FAN09G2283 Fragaria x ananassa HOM05D003809 ORTHO05D003935 2.4e-06 58.9 79 32.9
unitig_37.g12663 Utricularia gibba HOM05D003809 ORTHO05D003935 3.1e-06 58.5 101 31.7
RcHm_v2.0_Chr3g0463311 Rosa chinensis HOM05D003809 ORTHO05D003935 4.0e-06 58.2 79 32.9
Hund04870 Selenicereus undatus HOM05D003809 ORTHO05D003935 4.0e-06 58.2 139 28.1
Sc07g0006540 Simmondsia chinensis HOM05D003809 ORTHO05D003935 5.3e-06 57.8 73 37.0
FvH4_6g11650 Fragaria vesca HOM05D003809 ORTHO05D003935 6.9e-06 57.4 79 31.6
FAN14G0248 Fragaria x ananassa HOM05D003809 ORTHO05D003935 6.9e-06 57.4 79 31.6
FAN14G4099 Fragaria x ananassa HOM05D003809 ORTHO05D003935 6.9e-06 57.4 79 31.6


User provided reference genes

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