Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01024860001 Vitis vinifera HOM05D000964 ORTHO05D004047 6.6e-57 223.8 111 100.0
arahy.Tifrunner.gnm1.ann1.ND6SCQ Arachis hypogaea HOM05D000964 ORTHO05D004047 4.8e-23 111.3 77 72.7
arahy.Tifrunner.gnm1.ann1.YUC9G4 Arachis hypogaea HOM05D000964 ORTHO05D004047 4.8e-23 111.3 77 72.7
HanXRQChr00c0593g0576341 Helianthus annuus HOM05D000964 ORTHO05D004047 6.2e-23 110.9 77 71.4
HanXRQChr01g0020241 Helianthus annuus HOM05D000964 ORTHO05D004047 6.2e-23 110.9 77 71.4
HanXRQChr04g0127511 Helianthus annuus HOM05D000964 ORTHO05D004047 6.2e-23 110.9 77 71.4
HanXRQChr10g0284361 Helianthus annuus HOM05D000964 ORTHO05D004047 6.2e-23 110.9 77 71.4
HanXRQChr10g0318081 Helianthus annuus HOM05D000964 ORTHO05D004047 6.2e-23 110.9 77 71.4
HanXRQChr11g0321081 Helianthus annuus HOM05D000964 ORTHO05D004047 6.2e-23 110.9 77 71.4
HanXRQChr11g0326941 Helianthus annuus HOM05D000964 ORTHO05D004047 6.2e-23 110.9 77 71.4
HanXRQChr15g0486541 Helianthus annuus HOM05D000964 ORTHO05D004047 6.2e-23 110.9 77 71.4
HanXRQCPg0580161 Helianthus annuus HOM05D000964 ORTHO05D004047 6.2e-23 110.9 77 71.4
PGR111G0002 Punica granatum HOM05D000964 ORTHO05D004047 6.2e-23 110.9 77 74.0
Migut.D01434 Erythranthe guttata HOM05D000964 ORTHO05D004047 8.2e-23 110.5 77 71.4
Nn002s41359 Nelumbo nucifera HOM05D000964 ORTHO05D004047 8.2e-23 110.5 77 71.4
Nn049s41916 Nelumbo nucifera HOM05D000964 ORTHO05D004047 8.2e-23 110.5 77 71.4
Nn070s42369 Nelumbo nucifera HOM05D000964 ORTHO05D004047 8.2e-23 110.5 77 71.4
BolC7t41711H Brassica oleracea HOM05D000964 ORTHO05D004047 1.1e-22 110.2 77 74.0
CAN.G1595.4 Capsicum annuum HOM05D000964 ORTHO05D004047 1.1e-22 110.2 77 71.4
CAN.G327.18 Capsicum annuum HOM05D000964 ORTHO05D004047 1.1e-22 110.2 77 71.4
Cpa.g.c42072 Carica papaya HOM05D000964 ORTHO05D004047 1.1e-22 110.2 77 72.7
DCAR_032517 Daucus carota HOM05D000964 ORTHO05D004047 1.1e-22 110.2 75 73.3
Peaxi162Scf00527g00039 Petunia axillaris HOM05D000964 ORTHO05D004047 1.1e-22 110.2 77 71.4
Solyc00g500029.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 1.1e-22 110.2 77 71.4
Solyc00g500074.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 1.1e-22 110.2 77 71.4
Solyc00g500157.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 1.1e-22 110.2 77 71.4
PGSC0003DMG400014075 Solanum tuberosum HOM05D000964 ORTHO05D004047 1.1e-22 110.2 77 71.4
arahy.Tifrunner.gnm1.ann1.Z4WADK Arachis hypogaea HOM05D000964 ORTHO05D004047 1.4e-22 109.8 77 72.7
Lsat_1_v5_gn_3_85700 Lactuca sativa HOM05D000964 ORTHO05D004047 1.4e-22 109.8 77 70.1
Oeu012810.1 Olea europaea HOM05D000964 ORTHO05D004047 1.4e-22 109.8 77 71.4
HanXRQChr10g0303891 Helianthus annuus HOM05D000964 ORTHO05D004047 1.8e-22 109.4 77 70.1
Hma1.2p1_0818F.1_g223330 Hydrangea macrophylla HOM05D000964 ORTHO05D004047 1.8e-22 109.4 77 71.4
Atru.chr12.312 Acer truncatum HOM05D000964 ORTHO05D004047 2.4e-22 109.0 77 71.4
arahy.Tifrunner.gnm1.ann1.918II3 Arachis hypogaea HOM05D000964 ORTHO05D004047 2.4e-22 109.0 76 71.1
BNapus_Darmor_BZH_scaffold_253p00330 Brassica napus HOM05D000964 ORTHO05D004047 3.1e-22 108.6 77 72.7
BNapus_Darmor_BZH_scaffold_287p00260 Brassica napus HOM05D000964 ORTHO05D004047 3.1e-22 108.6 77 72.7
BolSC29t60485H Brassica oleracea HOM05D000964 ORTHO05D004047 3.1e-22 108.6 77 72.7
BolSC29t60526H Brassica oleracea HOM05D000964 ORTHO05D004047 3.1e-22 108.6 77 72.7
BolSC29t60607H Brassica oleracea HOM05D000964 ORTHO05D004047 3.1e-22 108.6 77 72.7
BolSC35t60667H Brassica oleracea HOM05D000964 ORTHO05D004047 3.1e-22 108.6 77 72.7
BolSC35t60732H Brassica oleracea HOM05D000964 ORTHO05D004047 3.1e-22 108.6 77 72.7
BolSC49t61165H Brassica oleracea HOM05D000964 ORTHO05D004047 3.1e-22 108.6 77 72.7
BraSC59t46573Z Brassica rapa HOM05D000964 ORTHO05D004047 3.1e-22 108.6 77 72.7
CARHR282230 Cardamine hirsuta HOM05D000964 ORTHO05D004047 3.1e-22 108.6 77 72.7
PSO548G0113 Papaver somniferum HOM05D000964 ORTHO05D004047 3.1e-22 108.6 77 70.1
Solyc09g050062.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 3.1e-22 108.6 77 70.1
Lj2C1239T2 Lonicera japonica HOM05D000964 ORTHO05D004047 4.0e-22 108.2 77 70.1
Lj2P1237T122 Lonicera japonica HOM05D000964 ORTHO05D004047 4.0e-22 108.2 77 70.1
Lju5009P0T55 Lonicera japonica HOM05D000964 ORTHO05D004047 4.0e-22 108.2 77 70.1
Oeu058362.1 Olea europaea HOM05D000964 ORTHO05D004047 4.0e-22 108.2 77 71.4
Psat6g111000 Pisum sativum HOM05D000964 ORTHO05D004047 4.0e-22 108.2 77 70.1
AL2G20580 Arabidopsis lyrata HOM05D000964 ORTHO05D004047 6.9e-22 107.5 77 71.4
AL2G21700 Arabidopsis lyrata HOM05D000964 ORTHO05D004047 6.9e-22 107.5 77 71.4
ATCG00740 Arabidopsis thaliana HOM05D000964 ORTHO05D004047 6.9e-22 107.5 77 71.4
Lalb_Chr25g0283351 Lupinus albus HOM05D000964 ORTHO05D004047 9.0e-22 107.1 75 72.0
Sed0000903 Sechium edule HOM05D000964 ORTHO05D004047 9.0e-22 107.1 77 68.8
CAN.G1478.7 Capsicum annuum HOM05D000964 ORTHO05D004047 1.2e-21 106.7 77 67.5
Psat5g206600 Pisum sativum HOM05D000964 ORTHO05D004047 1.2e-21 106.7 77 68.8
LjContig00318g0022290 Lotus japonicus HOM05D000964 ORTHO05D004047 1.5e-21 106.3 75 69.3
LjContig00319g0012184 Lotus japonicus HOM05D000964 ORTHO05D004047 1.5e-21 106.3 75 69.3
LjContig00319g0026138 Lotus japonicus HOM05D000964 ORTHO05D004047 1.5e-21 106.3 75 69.3
C02p60150 Brassica napus HOM05D000964 ORTHO05D004047 2.0e-21 105.9 77 71.4
EL10As12g24034 Beta vulgaris HOM05D000964 ORTHO05D004047 3.4e-21 105.1 77 68.8
HanXRQChr12g0369841 Helianthus annuus HOM05D000964 ORTHO05D004047 3.4e-21 105.1 75 68.0
TAR629G2589 Trochodendron aralioides HOM05D000964 ORTHO05D004047 3.4e-21 105.1 77 67.5
arahy.Tifrunner.gnm1.ann1.93R6SD Arachis hypogaea HOM05D000964 ORTHO05D004047 5.8e-21 104.4 77 68.8
MSTRG.11748 Avicennia marina HOM05D000964 ORTHO05D004047 5.8e-21 104.4 64 78.1
RcHm_v2.0_CPg0501901 Rosa chinensis HOM05D000964 ORTHO05D004047 5.8e-21 104.4 75 69.3
Medtr4g051380 Medicago truncatula HOM05D000964 ORTHO05D004047 1.7e-20 102.8 74 71.6
Gohir.1Z050334 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.9e-20 102.1 79 68.4
Gohir.A12G025100 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.9e-20 102.1 79 68.4
Gohir.D01G102099 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.9e-20 102.1 79 68.4
Gohir.D02G179050 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.9e-20 102.1 79 68.4
Gohir.D07G135300 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.9e-20 102.1 79 68.4
Hund08803 Selenicereus undatus HOM05D000964 ORTHO05D004047 2.9e-20 102.1 77 64.9
Hund29571 Selenicereus undatus HOM05D000964 ORTHO05D004047 2.9e-20 102.1 77 64.9
Hund29611 Selenicereus undatus HOM05D000964 ORTHO05D004047 2.9e-20 102.1 77 64.9
Hund30271 Selenicereus undatus HOM05D000964 ORTHO05D004047 2.9e-20 102.1 77 64.9
Hund31408 Selenicereus undatus HOM05D000964 ORTHO05D004047 2.9e-20 102.1 77 64.9
PSO478G2461 Papaver somniferum HOM05D000964 ORTHO05D004047 4.9e-20 101.3 75 66.7
Zm00001eb255890 Zea mays HOM05D000964 ORTHO05D004047 4.9e-20 101.3 77 63.6
Zm00001eb434880 Zea mays HOM05D000964 ORTHO05D004047 4.9e-20 101.3 77 63.6
Zm00001eb435090 Zea mays HOM05D000964 ORTHO05D004047 4.9e-20 101.3 77 63.6
Zm00001eb435140 Zea mays HOM05D000964 ORTHO05D004047 4.9e-20 101.3 77 63.6
Zm00001eb435360 Zea mays HOM05D000964 ORTHO05D004047 4.9e-20 101.3 77 63.6
EL10As15g24109 Beta vulgaris HOM05D000964 ORTHO05D004047 1.1e-19 100.1 80 65.0
ClCG11G017180 Citrullus lanatus HOM05D000964 ORTHO05D004047 1.1e-19 100.1 75 65.3
Hund28677 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.1e-19 100.1 64 73.4
HPP92_028393 Vanilla planifolia HOM05D000964 ORTHO05D004047 1.1e-19 100.1 64 76.6
HPP92_028402 Vanilla planifolia HOM05D000964 ORTHO05D004047 1.1e-19 100.1 64 76.6
HPP92_028410 Vanilla planifolia HOM05D000964 ORTHO05D004047 1.1e-19 100.1 64 76.6
EL10Ac5g11667 Beta vulgaris HOM05D000964 ORTHO05D004047 2.5e-19 99.0 79 65.8
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 2.5e-19 99.0 70 68.6
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 2.5e-19 99.0 70 68.6
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 2.5e-19 99.0 70 68.6
Lsat_1_v5_gn_7_96560 Lactuca sativa HOM05D000964 ORTHO05D004047 2.5e-19 99.0 70 68.6
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 2.5e-19 99.0 70 68.6
Medtr0002s0760 Medicago truncatula HOM05D000964 ORTHO05D004047 3.2e-19 98.6 74 66.2
BraSC103t45447Z Brassica rapa HOM05D000964 ORTHO05D004047 4.2e-19 98.2 70 70.0
BraSC143t45635Z Brassica rapa HOM05D000964 ORTHO05D004047 4.2e-19 98.2 70 70.0
BraSC58t46439Z Brassica rapa HOM05D000964 ORTHO05D004047 4.2e-19 98.2 70 70.0
Nitab4.5_0001564g0040 Nicotiana tabacum HOM05D000964 ORTHO05D004047 7.1e-19 97.4 77 63.6
EL10Ac4g08559 Beta vulgaris HOM05D000964 ORTHO05D004047 1.2e-18 96.7 77 61.0
BraA06t25382Z Brassica rapa HOM05D000964 ORTHO05D004047 2.1e-18 95.9 74 66.2
Gohir.A01G137773 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.1e-18 95.9 79 65.8
Medtr1g070860 Medicago truncatula HOM05D000964 ORTHO05D004047 2.7e-18 95.5 75 66.7
Nitab4.5_0004376g0120 Nicotiana tabacum HOM05D000964 ORTHO05D004047 7.9e-18 94.0 62 74.2
Oeu012812.1 Olea europaea HOM05D000964 ORTHO05D004047 1.0e-17 93.6 63 73.0
Lalb_Chr03g0039311 Lupinus albus HOM05D000964 ORTHO05D004047 3.9e-17 91.7 65 69.2
BolSC46t61020H Brassica oleracea HOM05D000964 ORTHO05D004047 6.7e-17 90.9 65 70.8
SalBow1G3145 Salvia bowleyana HOM05D000964 ORTHO05D003870 8.7e-17 90.5 74 58.1
HanXRQChr00c0392g0574491 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-16 89.7 64 67.2
HanXRQChr03g0068101 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-16 89.7 64 67.2
HanXRQChr08g0207991 Helianthus annuus HOM05D000964 ORTHO05D003870 1.5e-16 89.7 64 67.2
HanXRQChr05g0152581 Helianthus annuus HOM05D000964 ORTHO05D004047 1.9e-16 89.4 63 68.3
Hma1.2p1_0818F.1_g223310 Hydrangea macrophylla HOM05D000631 ORTHO05D004047 3.3e-16 88.6 63 68.3
vmacro22401 Vaccinium macrocarpon HOM05D000964 ORTHO05D004047 2.8e-15 85.5 77 58.4
vmacro22426 Vaccinium macrocarpon HOM05D000964 ORTHO05D004047 2.8e-15 85.5 77 58.4
Nitab4.5_0027992g0010 Nicotiana tabacum HOM05D000964 ORTHO05D003870 3.7e-15 85.1 51 74.5
DCAR_022734 Daucus carota HOM05D000964 ORTHO05D004047 1.2e-13 80.1 46 82.6
Solyc08g081560.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 3.4e-13 78.6 68 57.4
SEGI_32358 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 5.9e-13 77.8 73 53.4
Nitab4.5_0020737g0020 Nicotiana tabacum HOM05D000964 ORTHO05D004047 1.0e-12 77.0 77 54.5
Gohir.D08G194628 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.7e-12 76.3 77 54.5
HanXRQChr02g0052621 Helianthus annuus HOM05D000964 ORTHO05D003870 8.5e-12 73.9 53 69.8
Gohir.A08G063300 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.5e-11 72.4 55 63.6
Pp3c5_15590 Physcomitrium patens HOM05D000964 ORTHO05D004047 7.2e-11 70.9 63 47.6
Sed0026352 Sechium edule HOM05D000964 ORTHO05D004047 1.2e-10 70.1 53 66.0
CSS0021839 Camellia sinensis var. sinensis HOM05D000964 ORTHO05D004047 2.1e-10 69.3 48 66.7
SMO086G0025 Selaginella moellendorffii HOM05D000964 ORTHO05D004047 2.7e-10 68.9 48 62.5
Nitab4.5_0000477g0110 Nicotiana tabacum HOM05D000964 ORTHO05D003870 2.3e-09 65.9 44 68.2
Hund30094 Selenicereus undatus HOM05D000964 ORTHO05D004047 2.3e-09 65.9 55 60.0
BolSC47t61077H Brassica oleracea HOM05D000964 ORTHO05D004047 6.7e-09 64.3 38 81.6
SEGI_04931 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.5e-08 63.2 54 57.4
SEGI_17120 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.5e-08 63.2 54 57.4
SEGI_21589 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.5e-08 63.2 54 57.4
SEGI_31867 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.5e-08 63.2 54 57.4
SEGI_36889 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.5e-08 63.2 54 57.4
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 2.5e-08 62.4 39 71.8
SEGI_02369 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 4.3e-08 61.6 54 57.4
SEGI_22757 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 5.7e-08 61.2 54 55.6
SEGI_33647 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 7.4e-08 60.8 54 55.6
Pp3c11_16940 Physcomitrium patens HOM05D000964 ORTHO05D004047 4.8e-07 58.2 63 46.0
Gohir.A05G326924 Gossypium hirsutum HOM05D000964 ORTHO05D004047 8.2e-07 57.4 46 63.0
Solyc12g035890.3 Solanum lycopersicum HOM05D000964 ORTHO05D004047 1.8e-06 56.2 42 64.3


User provided reference genes

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