Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 0.0e+00 1097.8 561 100.0
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 1.6e-223 779.6 631 65.9
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 9.0e-219 763.8 636 64.0
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 3.0e-214 748.8 607 65.9
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 5.6e-213 744.6 629 63.0
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 5.3e-211 738.0 632 64.1
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 4.5e-210 734.9 615 63.1
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 1.1e-208 730.3 612 62.6
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 4.2e-208 728.4 624 61.9
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 7.1e-208 727.6 623 63.9
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.2e-207 726.9 615 63.7
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 1.8e-206 723.0 632 62.7
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 3.3e-205 718.8 618 63.3
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 5.6e-205 718.0 614 61.6
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 7.4e-205 717.6 600 62.7
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 9.6e-205 717.2 611 63.2
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 2.8e-204 715.7 618 61.5
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.1e-203 713.8 611 63.0
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 1.8e-203 713.0 622 60.3
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 2.4e-203 712.6 625 61.4
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 4.0e-203 711.8 625 61.1
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 6.9e-203 711.1 628 61.0
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 1.5e-202 709.9 611 62.7
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.4e-202 708.8 611 62.2
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 4.5e-202 708.4 607 63.8
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 5.8e-202 708.0 624 60.6
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 7.6e-202 707.6 610 61.6
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 7.6e-202 707.6 626 60.2
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 1.0e-201 707.2 610 61.5
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.2e-201 706.1 611 62.4
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 2.2e-201 706.1 615 61.1
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 8.4e-201 704.1 618 61.8
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 9.3e-200 700.7 629 58.2
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 1.2e-199 700.3 596 62.1
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 1.6e-199 699.9 585 65.3
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 2.7e-199 699.1 611 60.1
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 2.7e-199 699.1 604 61.4
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 2.7e-199 699.1 593 62.7
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 7.9e-199 697.6 593 62.6
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.0e-198 697.2 633 60.0
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 1.0e-198 697.2 602 62.3
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 5.1e-198 694.9 618 61.7
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 1.1e-197 693.7 606 62.7
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 3.3e-197 692.2 626 59.3
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 3.3e-197 692.2 632 60.0
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 7.4e-197 691.0 617 60.5
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 3.7e-196 688.7 637 59.8
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 4.8e-196 688.3 622 59.8
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 8.2e-196 687.6 604 59.4
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 1.4e-195 686.8 598 62.5
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 6.9e-195 684.5 588 64.1
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 1.2e-194 683.7 619 61.9
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 2.6e-194 682.6 608 61.0
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 3.4e-194 682.2 590 61.5
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 4.5e-194 681.8 638 57.2
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.7e-193 679.9 592 61.1
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 2.9e-193 679.1 603 59.5
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 8.4e-193 677.6 597 59.5
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 1.1e-192 677.2 611 60.9
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.9e-192 676.4 604 60.1
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 1.9e-192 676.4 636 57.2
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 2.5e-192 676.0 589 61.0
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 3.2e-192 675.6 579 63.7
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 5.5e-192 674.9 610 60.3
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 7.9e-191 671.0 593 58.9
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 1.0e-190 670.6 624 58.5
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 1.3e-190 670.2 576 63.2
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 3.0e-190 669.1 633 56.7
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.1e-189 667.2 592 59.5
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 1.5e-189 666.8 633 57.5
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 2.5e-189 666.0 620 58.5
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 4.3e-189 665.2 609 58.8
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 4.1e-187 658.7 617 58.3
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 2.0e-186 656.4 578 60.2
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 2.6e-186 656.0 610 58.4
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 4.5e-186 655.2 571 61.3
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 7.7e-186 654.4 593 59.0
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 1.3e-185 653.7 590 58.8
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 1.1e-184 650.6 619 57.8
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 1.1e-184 650.6 608 57.6
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 1.9e-184 649.8 616 59.1
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 4.2e-184 648.7 628 56.4
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 1.2e-183 647.1 627 56.8
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 1.6e-183 646.7 629 56.3
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 3.6e-183 645.6 593 58.3
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 1.8e-182 643.3 600 58.8
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 2.3e-182 642.9 614 58.0
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 2.3e-182 642.9 625 58.1
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 2.6e-181 639.4 595 58.2
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 2.6e-181 639.4 595 58.2
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.3e-181 638.6 540 63.1
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 1.7e-180 636.7 597 58.6
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 3.4e-178 629.0 592 58.3
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 5.0e-177 625.2 577 58.2
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 1.9e-176 623.2 564 59.2
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 3.2e-176 622.5 577 57.9
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 3.2e-176 622.5 577 57.9
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 5.5e-176 621.7 577 57.5
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 9.4e-176 620.9 580 58.3
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 1.6e-175 620.2 580 57.8
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 2.1e-175 619.8 577 57.4
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 2.1e-167 593.2 620 53.2
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 4.1e-163 578.9 569 55.7
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 9.1e-163 577.8 578 55.2
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 1.2e-162 577.4 502 62.2
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 2.0e-162 576.6 559 56.5
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 2.2e-156 556.6 529 59.4
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 8.5e-153 544.7 546 55.1
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 2.5e-152 543.1 528 54.9
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 4.4e-149 532.3 553 53.9
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 6.3e-148 528.5 544 50.6
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 1.3e-145 520.8 658 44.1
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 8.6e-145 518.1 490 55.7
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 2.5e-144 516.5 566 52.7
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 9.5e-144 514.6 570 51.1
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 3.3e-136 489.6 643 48.2
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 3.6e-127 459.5 456 56.1
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 4.0e-126 456.1 468 53.8
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 5.2e-126 455.7 485 53.6
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 8.1e-111 405.2 475 51.2
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 2.9e-108 396.7 395 58.0
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 3.5e-106 389.8 401 54.9
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 1.0e-105 388.3 645 38.9
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 9.6e-104 381.7 248 78.2
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 3.6e-103 379.8 645 37.5
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 3.0e-97 360.1 373 53.6
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 4.3e-96 356.3 525 41.1
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 5.1e-89 332.8 261 67.8
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 4.8e-87 326.2 437 46.2
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 3.4e-85 320.1 238 66.0
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.7e-84 317.8 363 52.6
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.8e-84 316.6 363 52.3
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 4.6e-74 283.1 538 37.2
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 9.1e-70 268.9 235 59.6
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 1.4e-62 245.0 146 76.0
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 3.1e-62 243.8 190 64.7
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 1.6e-58 231.5 781 28.0
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 2.8e-55 220.7 331 42.3
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 1.4e-54 218.4 348 40.8
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 3.1e-54 217.2 331 42.0
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 1.3e-47 195.3 540 30.6
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 4.1e-46 190.3 510 30.6
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 2.1e-42 177.9 153 61.4
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 2.7e-42 177.6 311 39.5
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 4.1e-38 163.7 168 52.4
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 1.0e-36 159.1 531 28.6
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 2.5e-27 127.9 185 44.3
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 1.8e-22 111.7 60 85.0
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 2.7e-21 107.8 83 66.3
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 2.9e-15 87.8 101 53.5
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 7.0e-14 83.2 245 31.8
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 4.3e-11 73.9 48 75.0
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 4.4e-08 63.9 73 54.8
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 8.3e-07 59.7 51 62.7
SGA_v2.0_scaffold48G18055 Striga asiatica HOM05D000936 ORTHO05D399589 7.1e-06 56.6 56 58.9
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 9.2e-06 56.2 39 66.7


User provided reference genes

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