Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01009213001 Vitis vinifera HOM05D001366 ORTHO05D005449 5.7e-89 330.9 164 100.0
Glyma.02G216100 Glycine max HOM05D001366 ORTHO05D005449 1.5e-52 209.9 107 97.2
Phvul.008G183300 Phaseolus vulgaris HOM05D001366 ORTHO05D005449 1.5e-52 209.9 107 97.2
FAN18G2982 Fragaria x ananassa HOM05D001366 ORTHO05D005449 2.5e-52 209.1 108 95.4
Manes.18G057000 Manihot esculenta HOM05D001366 ORTHO05D005449 2.5e-52 209.1 107 97.2
LjContig00408g0006754 Lotus japonicus HOM05D001366 ORTHO05D005449 3.3e-52 208.8 107 96.3
FvH4_5g34180 Fragaria vesca HOM05D001366 ORTHO05D005449 4.2e-52 208.4 107 96.3
CANSAT25G2801 Cannabis sativa HOM05D001366 ORTHO05D005449 5.5e-52 208.0 107 96.3
Prupe.1G536300 Prunus persica HOM05D001366 ORTHO05D005449 7.2e-52 207.6 107 96.3
PSO013G0324 Papaver somniferum HOM05D001366 ORTHO05D005449 9.5e-52 207.2 107 95.3
PSO832G3977 Papaver somniferum HOM05D001366 ORTHO05D005449 1.2e-51 206.8 107 94.4
Sed0015347 Sechium edule HOM05D001366 ORTHO05D005449 1.2e-51 206.8 107 95.3
Medtr7g005540 Medicago truncatula HOM05D001366 ORTHO05D005449 1.6e-51 206.5 107 94.4
CsaV3_2G033370 Cucumis sativus L. HOM05D001366 ORTHO05D005449 2.1e-51 206.1 107 94.4
C01p19760 Brassica napus HOM05D001366 ORTHO05D003220 2.8e-51 205.7 157 70.1
BolC1t01904H Brassica oleracea HOM05D001366 ORTHO05D003220 2.8e-51 205.7 157 70.1
ClCG11G014700 Citrullus lanatus HOM05D001366 ORTHO05D005449 2.8e-51 205.7 107 95.3
FAN04G2369 Fragaria x ananassa HOM05D001366 ORTHO05D005449 2.8e-51 205.7 107 94.4
Hma1.2p1_0125F.1_g058680 Hydrangea macrophylla HOM05D001366 ORTHO05D005449 2.8e-51 205.7 107 95.3
PSO761G0276 Papaver somniferum HOM05D001366 ORTHO05D005449 2.8e-51 205.7 107 94.4
Sed0016266 Sechium edule HOM05D001366 ORTHO05D005449 2.8e-51 205.7 107 94.4
MBI19_g32700_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D005449 3.6e-51 205.3 107 95.3
Aqoxy6G00666 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 4.7e-51 204.9 107 93.5
Cpa.g.sc21.43 Carica papaya HOM05D001366 ORTHO05D005449 4.7e-51 204.9 107 94.4
Glyma.14G183100 Glycine max HOM05D001366 ORTHO05D005449 6.1e-51 204.5 107 95.3
Actinidia29656 Actinidia chinensis HOM05D001366 ORTHO05D005449 8.0e-51 204.1 107 94.4
DCAR_006444 Daucus carota HOM05D001366 ORTHO05D005449 1.0e-50 203.8 107 94.4
Lalb_Chr11g0064851 Lupinus albus HOM05D001366 ORTHO05D005449 1.0e-50 203.8 107 94.4
PSO700G0345 Papaver somniferum HOM05D001366 ORTHO05D005449 1.0e-50 203.8 107 93.5
Potri.005G151700 Populus trichocarpa HOM05D001366 ORTHO05D005449 1.0e-50 203.8 107 92.5
Rhsim07G0213700 Rhododendron simsii HOM05D001366 ORTHO05D005449 1.0e-50 203.8 107 93.5
RcHm_v2.0_Chr7g0233761 Rosa chinensis HOM05D001366 ORTHO05D005449 1.0e-50 203.8 107 93.5
CiPaw.07G162800 Carya illinoinensis HOM05D001366 ORTHO05D005449 1.4e-50 203.4 107 94.4
TPR.G15622 Trifolium pratense HOM05D001366 ORTHO05D005449 1.4e-50 203.4 105 95.2
TAR625G0060 Trochodendron aralioides HOM05D001366 ORTHO05D005449 1.4e-50 203.4 107 95.3
EL10Ac8g20405 Beta vulgaris HOM05D001366 ORTHO05D005449 1.8e-50 203.0 107 93.5
MELO3C008106.2 Cucumis melo HOM05D001366 ORTHO05D005449 1.8e-50 203.0 107 93.5
EL10Ac9g20840 Beta vulgaris HOM05D001366 ORTHO05D005449 2.3e-50 202.6 107 94.4
Eucgr.F00436 Eucalyptus grandis HOM05D001366 ORTHO05D005449 2.3e-50 202.6 107 94.4
Psat2g064960 Pisum sativum HOM05D001366 ORTHO05D005449 2.3e-50 202.6 107 93.5
Hund07854 Selenicereus undatus HOM05D001366 ORTHO05D005449 2.3e-50 202.6 135 80.0
Gorai.009G278800 Gossypium raimondii HOM05D001366 ORTHO05D005449 3.0e-50 202.2 107 93.5
Lalb_Chr23g0269931 Lupinus albus HOM05D001366 ORTHO05D005449 3.0e-50 202.2 107 93.5
PGR042G3224 Punica granatum HOM05D001366 ORTHO05D005449 3.0e-50 202.2 107 92.5
TWI09G0135 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 3.0e-50 202.2 107 92.5
CiPaw.08G057200 Carya illinoinensis HOM05D001366 ORTHO05D005449 4.0e-50 201.8 107 92.5
Ciclev10002917m.g Citrus clementina HOM05D001366 ORTHO05D005449 4.0e-50 201.8 107 93.5
COL.COLO4_35286 Corchorus olitorius HOM05D001366 ORTHO05D005449 4.0e-50 201.8 107 93.5
Gohir.D05G220900 Gossypium hirsutum HOM05D001366 ORTHO05D005449 4.0e-50 201.8 107 94.4
Gorai.009G228000 Gossypium raimondii HOM05D001366 ORTHO05D005449 4.0e-50 201.8 107 94.4
Lalb_Chr08g0242611 Lupinus albus HOM05D001366 ORTHO05D005449 4.0e-50 201.8 107 93.5
BcaC09g50868 Brassica carinata HOM05D001366 ORTHO05D003220 5.2e-50 201.4 106 92.5
Aa31LG4G9540 Aethionema arabicum HOM05D001366 ORTHO05D005449 6.8e-50 201.1 107 92.5
ATR0691G175 Amborella trichopoda HOM05D001366 ORTHO05D005449 6.8e-50 201.1 107 93.5
BcaNung05637 Brassica carinata HOM05D001366 ORTHO05D005449 6.8e-50 201.1 107 92.5
A03p55290 Brassica napus HOM05D001366 ORTHO05D005449 6.8e-50 201.1 107 92.5
C07p53590 Brassica napus HOM05D001366 ORTHO05D005449 6.8e-50 201.1 107 92.5
BraA03t14588Z Brassica rapa HOM05D001366 ORTHO05D005449 6.8e-50 201.1 107 92.5
Carub.0007s1663 Capsella rubella HOM05D001366 ORTHO05D005449 6.8e-50 201.1 107 92.5
Nn1g05642 Nelumbo nucifera HOM05D001366 ORTHO05D005449 6.8e-50 201.1 107 92.5
CARHR231830 Cardamine hirsuta HOM05D001366 ORTHO05D005449 8.9e-50 200.7 107 91.6
CsaV3_2G033350 Cucumis sativus L. HOM05D001366 ORTHO05D005449 8.9e-50 200.7 107 93.5
Aqoxy2G03242 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 1.2e-49 200.3 107 90.7
Haze_22489 Corylus avellana HOM05D001366 ORTHO05D005449 1.2e-49 200.3 107 92.5
Gohir.A05G264200 Gossypium hirsutum HOM05D001366 ORTHO05D005449 1.2e-49 200.3 107 92.5
AL7G28780 Arabidopsis lyrata HOM05D001366 ORTHO05D005449 1.5e-49 199.9 107 91.6
AT4G24440 Arabidopsis thaliana HOM05D001366 ORTHO05D005449 1.5e-49 199.9 107 91.6
Thhalv10026637m.g Eutrema salsugineum HOM05D001366 ORTHO05D005449 1.5e-49 199.9 107 91.6
Gohir.D05G266700 Gossypium hirsutum HOM05D001366 ORTHO05D005449 1.5e-49 199.9 107 92.5
Sp7g22400 Schrenkiella parvula HOM05D001366 ORTHO05D005449 1.5e-49 199.9 107 91.6
Atru.chr13.973 Acer truncatum HOM05D001366 ORTHO05D005449 2.0e-49 199.5 107 91.6
BcaC06g32884 Brassica carinata HOM05D001366 ORTHO05D005449 2.0e-49 199.5 107 91.6
A01p15810 Brassica napus HOM05D001366 ORTHO05D003220 2.0e-49 199.5 105 92.4
BolC7t45851H Brassica oleracea HOM05D001366 ORTHO05D005449 2.0e-49 199.5 107 91.6
BraA01t01516Z Brassica rapa HOM05D001366 ORTHO05D003220 2.0e-49 199.5 105 92.4
Lsat_1_v5_gn_6_107360 Lactuca sativa HOM05D001366 ORTHO05D005449 2.0e-49 199.5 106 91.5
arahy.Tifrunner.gnm1.ann1.8785AP Arachis hypogaea HOM05D001366 ORTHO05D005449 2.6e-49 199.1 107 91.6
arahy.Tifrunner.gnm1.ann1.CRNC3Y Arachis hypogaea HOM05D001366 ORTHO05D005449 2.6e-49 199.1 107 91.6
arahy.Tifrunner.gnm1.ann1.T41BVH Arachis hypogaea HOM05D001366 ORTHO05D005449 2.6e-49 199.1 167 64.7
THA.LOC104815469 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 2.6e-49 199.1 107 91.6
Nitab4.5_0000885g0060 Nicotiana tabacum HOM05D001366 ORTHO05D005449 3.4e-49 198.7 107 92.5
TWI73G1055 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 3.4e-49 198.7 107 90.7
A08p21460 Brassica napus HOM05D001366 ORTHO05D005449 4.4e-49 198.4 107 91.6
BolC8t48576H Brassica oleracea HOM05D001366 ORTHO05D005449 4.4e-49 198.4 107 91.6
BraA08t34095Z Brassica rapa HOM05D001366 ORTHO05D005449 4.4e-49 198.4 107 91.6
HPP92_010288 Vanilla planifolia HOM05D001366 ORTHO05D005449 4.4e-49 198.4 106 91.5
Atru.chr11.619 Acer truncatum HOM05D001366 ORTHO05D005449 5.7e-49 198.0 107 90.7
arahy.Tifrunner.gnm1.ann1.HU70H8 Arachis hypogaea HOM05D001366 ORTHO05D005449 5.7e-49 198.0 107 90.7
Thecc.08G074000 Theobroma cacao HOM05D001366 ORTHO05D005449 7.5e-49 197.6 107 91.6
Duzib041G0019 Durio zibethinus HOM05D001366 ORTHO05D005449 9.8e-49 197.2 107 90.7
HanXRQChr10g0277741 Helianthus annuus HOM05D001366 ORTHO05D005449 9.8e-49 197.2 107 90.7
PGSC0003DMG400002052 Solanum tuberosum HOM05D001366 ORTHO05D005449 9.8e-49 197.2 107 92.5
CSS0031876 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 1.7e-48 196.4 107 91.6
Ah.01g003970 Amaranthus hybridus HOM05D001366 ORTHO05D005449 2.2e-48 196.1 107 91.6
CSS0026904 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 2.2e-48 196.1 107 91.6
CAN.G1104.8 Capsicum annuum HOM05D001366 ORTHO05D005449 2.2e-48 196.1 107 91.6
Peaxi162Scf00160g00913 Petunia axillaris HOM05D001366 ORTHO05D005449 2.2e-48 196.1 107 90.7
Solyc12g088030.2 Solanum lycopersicum HOM05D001366 ORTHO05D005449 2.2e-48 196.1 107 91.6
Sopen12g030060 Solanum pennellii HOM05D001366 ORTHO05D005449 2.2e-48 196.1 107 91.6
Cc10_g08370 Coffea canephora HOM05D001366 ORTHO05D005449 2.8e-48 195.7 107 91.6
Nitab4.5_0000354g0080 Nicotiana tabacum HOM05D001366 ORTHO05D005449 2.8e-48 195.7 107 91.6
THA.LOC104799853 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 2.8e-48 195.7 107 89.7
Zm00001eb356100 Zea mays HOM05D001366 ORTHO05D005449 4.9e-48 194.9 107 89.7
ECA240G3991 Erigeron canadensis HOM05D001366 ORTHO05D005449 6.3e-48 194.5 107 89.7
Gohir.A05G216500 Gossypium hirsutum HOM05D001366 ORTHO05D005449 1.1e-47 193.7 117 86.3
Rhsim02G0071900 Rhododendron simsii HOM05D001366 ORTHO05D005449 1.8e-47 193.0 123 81.3
Os05g0107700 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 2.4e-47 192.6 107 88.8
HanXRQChr03g0063191 Helianthus annuus HOM05D001366 ORTHO05D005449 9.2e-47 190.7 107 87.9
TPR.G38776 Trifolium pratense HOM05D001366 ORTHO05D005449 9.2e-47 190.7 107 87.9
Medtr5g066740 Medicago truncatula HOM05D001366 ORTHO05D005449 2.7e-46 189.1 107 84.1
Oeu040884.1 Olea europaea HOM05D001366 ORTHO05D005449 3.5e-46 188.7 107 86.9
Sabra05G0119200 Salix brachista HOM05D001366 ORTHO05D005449 4.5e-46 188.3 133 74.4
MSTRG.5323 Avicennia marina HOM05D001366 ORTHO05D005449 7.8e-46 187.6 107 84.1
TWI56G0439 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 2.3e-45 186.0 107 84.1
Migut.N01147 Erythranthe guttata HOM05D001366 ORTHO05D005449 6.6e-45 184.5 107 85.0
SalBow3G1925 Salvia bowleyana HOM05D001366 ORTHO05D005449 6.6e-45 184.5 107 85.0
SalBow6G3832 Salvia bowleyana HOM05D001366 ORTHO05D005449 6.6e-45 184.5 107 85.0
SalBow6G5818 Salvia bowleyana HOM05D001366 ORTHO05D005449 6.6e-45 184.5 107 85.0
MSTRG.27758 Avicennia marina HOM05D001366 ORTHO05D005449 1.5e-44 183.3 107 83.2
Os01g0970500 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 1.5e-44 183.3 104 84.6
Zm00001eb139900 Zea mays HOM05D001366 ORTHO05D005449 1.5e-44 183.3 104 85.6
SGA_v2.0_scaffold337G49194 Striga asiatica HOM05D001366 ORTHO05D005449 1.9e-44 183.0 107 84.1
MD08G1203900 Malus domestica HOM05D001366 ORTHO05D005449 4.3e-44 181.8 94 94.7
MSTRG.16686 Avicennia marina HOM05D001366 ORTHO05D005449 1.6e-43 179.9 107 79.4
AUR62017035 Chenopodium quinoa HOM05D001366 ORTHO05D005449 2.8e-43 179.1 94 94.7
SGA_v2.0_scaffold219G42523 Striga asiatica HOM05D001366 ORTHO05D005449 2.8e-43 179.1 105 82.9
unitig_22.g6842 Utricularia gibba HOM05D001366 ORTHO05D005449 8.0e-43 177.6 107 79.4
Psat0s2399g0160 Pisum sativum HOM05D001366 ORTHO05D005449 6.8e-42 174.5 104 78.8
SHI29728 Sapria himalayana HOM05D001366 ORTHO05D005449 8.9e-42 174.1 107 82.2
ECA246G1742 Erigeron canadensis HOM05D001366 ORTHO05D005449 2.0e-41 172.9 98 85.7
Actinidia19254 Actinidia chinensis HOM05D001366 ORTHO05D005449 6.4e-40 167.9 107 74.8
TAR381G0322 Trochodendron aralioides HOM05D001366 ORTHO05D005449 1.7e-37 159.8 107 74.8
Oeu038169.3 Olea europaea HOM05D001366 ORTHO05D005449 3.0e-37 159.1 165 56.4
Lsat_1_v5_gn_7_43741 Lactuca sativa HOM05D001366 ORTHO05D005449 9.5e-36 154.1 84 88.1
Mapoly0012s0108 Marchantia polymorpha HOM05D001366 ORTHO05D005449 2.8e-35 152.5 107 64.5
Duzib116G0949 Durio zibethinus HOM05D001366 ORTHO05D005449 3.6e-35 152.1 107 73.8
AagrBONN_evm.TU.Sc2ySwM_228.5579 Anthoceros agrestis HOM05D001366 ORTHO05D005449 4.0e-34 148.7 107 61.7
Pp3c15_13540 Physcomitrium patens HOM05D001366 ORTHO05D005449 1.2e-33 147.1 107 63.6
Pp3c9_10830 Physcomitrium patens HOM05D001366 ORTHO05D005449 2.0e-33 146.4 107 63.6
AagrBONN_evm.TU.Sc2ySwM_228.3950 Anthoceros agrestis HOM05D001366 ORTHO05D005449 2.9e-32 142.5 107 58.9
Actinidia19617 Actinidia chinensis HOM05D001366 ORTHO05D005449 4.9e-32 141.7 71 97.2
SMO169G0007 Selaginella moellendorffii HOM05D001366 ORTHO05D005449 4.9e-32 141.7 106 60.4
RcHm_v2.0_Chr5g0012851 Rosa chinensis HOM05D001366 ORTHO05D005449 1.1e-26 124.0 107 57.9
Migut.B00439 Erythranthe guttata HOM05D001366 ORTHO05D005449 6.8e-26 121.3 107 58.9
unitig_8.g3420 Utricularia gibba HOM05D001366 ORTHO05D005449 3.7e-24 115.5 93 62.4
Dinv42590 Davidia involucrata HOM05D001366 ORTHO05D005449 1.1e-23 114.0 69 85.5
Ca_08744_v3 Cicer arietinum L. HOM05D001366 ORTHO05D005449 1.9e-23 113.2 60 96.7
VMungo0647G1399 Vigna mungo HOM05D001366 ORTHO05D005449 1.9e-23 113.2 60 96.7
Lsat_1_v5_gn_4_60280 Lactuca sativa HOM05D001366 ORTHO05D005449 4.1e-23 112.1 67 82.1
QL09p018667 Quercus lobata HOM05D001366 ORTHO05D005449 4.1e-23 112.1 60 96.7
vmacro04625 Vaccinium macrocarpon HOM05D001366 ORTHO05D005449 1.2e-22 110.5 60 93.3
Haze_27711 Corylus avellana HOM05D001366 ORTHO05D005449 2.1e-22 109.8 100 51.0
AagrBONN_evm.TU.Sc2ySwM_368.1269 Anthoceros agrestis HOM05D001366 ORTHO05D005449 4.6e-22 108.6 109 45.9
C06p07570 Brassica napus HOM05D001366 ORTHO05D005449 1.2e-19 100.5 107 58.9
BolC6t35845H Brassica oleracea HOM05D001366 ORTHO05D005449 1.2e-19 100.5 107 58.9
BcaC08g43388 Brassica carinata HOM05D001366 ORTHO05D005449 1.2e-17 94.0 78 62.8
Mapoly0067s0078 Marchantia polymorpha HOM05D001366 ORTHO05D005449 2.0e-17 93.2 98 46.9
AUR62014838 Chenopodium quinoa HOM05D001366 ORTHO05D005449 1.1e-15 87.4 57 77.2
HanXRQChr05g0143271 Helianthus annuus HOM05D001366 ORTHO05D005449 2.1e-14 83.2 51 80.4
Cre10.g424150 Chlamydomonas reinhardtii HOM05D001366 ORTHO05D005449 2.7e-14 82.8 100 38.0
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 7.3e-12 74.7 70 58.6
PRCOL_00001724 Prasinoderma coloniale HOM05D001366 ORTHO05D005449 2.1e-11 73.2 92 37.0
TAR374G0947 Trochodendron aralioides HOM05D000025 ORTHO05D000040 3.4e-09 65.9 34 82.4
HanXRQChr11g0353851 Helianthus annuus HOM05D001366 ORTHO05D005449 7.6e-09 64.7 36 86.1
Lsat_1_v5_gn_8_45161 Lactuca sativa HOM05D001675 ORTHO05D001808 1.2e-06 57.4 38 76.3


User provided reference genes

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