Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 0.0e+00 1217.6 631 100.0
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 0.0e+00 1198.0 631 98.6
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 0.0e+00 1194.1 631 98.3
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 0.0e+00 1167.1 631 96.2
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 0.0e+00 1162.5 612 96.7
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 0.0e+00 1087.0 645 88.2
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.9e-298 1027.3 541 96.5
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 2.4e-252 875.5 649 72.9
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 5.9e-251 870.9 625 75.2
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 5.1e-247 857.8 633 73.9
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 4.7e-224 781.6 618 67.5
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 9.7e-222 773.9 632 66.1
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 1.3e-221 773.5 622 66.1
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 1.7e-218 763.1 617 66.5
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 5.7e-214 748.0 619 65.1
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 3.7e-213 745.3 617 65.5
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 6.3e-213 744.6 630 63.8
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 6.3e-213 744.6 621 65.2
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.8e-212 743.0 633 64.1
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 4.1e-212 741.9 621 64.6
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 2.0e-211 739.6 633 62.9
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 5.9e-211 738.0 637 64.1
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 7.7e-211 737.6 628 64.3
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 1.7e-210 736.5 618 64.7
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 2.9e-210 735.7 628 64.6
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 1.9e-209 733.0 628 64.3
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 1.2e-206 723.8 623 63.4
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 1.2e-206 723.8 633 61.8
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 1.5e-206 723.4 615 65.0
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 8.3e-205 717.6 613 62.2
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 1.4e-204 716.8 632 62.8
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 1.8e-204 716.5 632 62.7
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 5.0e-202 708.4 633 62.4
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 8.6e-202 707.6 639 62.1
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 8.6e-202 707.6 621 62.8
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 1.5e-201 706.8 620 62.3
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 1.0e-199 700.7 617 62.4
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 1.8e-199 699.9 628 61.8
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 1.8e-199 699.9 635 61.1
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 1.8e-199 699.9 613 62.3
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 6.8e-199 698.0 611 62.7
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 8.9e-199 697.6 626 60.7
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.2e-198 697.2 615 62.1
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 1.5e-198 696.8 629 60.7
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 1.5e-198 696.8 630 61.7
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.3e-197 693.7 617 62.1
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 2.2e-197 693.0 616 62.2
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 3.7e-197 692.2 625 60.6
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 8.3e-197 691.0 621 62.0
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 8.3e-197 691.0 633 61.0
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 2.4e-196 689.5 622 60.1
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 4.1e-196 688.7 622 62.4
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 9.2e-196 687.6 627 60.4
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 1.2e-195 687.2 616 61.4
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 3.5e-195 685.6 610 63.0
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 4.6e-195 685.3 616 62.3
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 1.3e-194 683.7 627 61.4
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 1.7e-194 683.3 621 62.5
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 3.0e-194 682.6 617 59.6
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 3.0e-194 682.6 619 61.2
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 3.9e-194 682.2 630 60.8
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 1.1e-193 680.6 613 61.3
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 3.3e-193 679.1 628 60.8
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 7.3e-193 677.9 631 60.5
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 9.5e-193 677.6 626 60.2
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 9.5e-193 677.6 609 60.9
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 2.8e-192 676.0 623 60.4
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 2.8e-192 676.0 614 60.9
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 3.6e-192 675.6 623 58.9
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 4.7e-192 675.2 599 61.3
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 1.8e-191 673.3 637 59.7
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 1.8e-191 673.3 634 57.9
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 3.1e-191 672.5 623 59.7
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 1.5e-190 670.2 614 59.3
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 5.8e-190 668.3 625 59.4
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 5.8e-190 668.3 632 57.9
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 7.5e-190 667.9 637 59.5
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 2.9e-189 666.0 614 59.8
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 2.9e-189 666.0 614 59.8
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.9e-189 665.2 372 94.1
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 6.4e-189 664.8 628 59.7
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 8.3e-189 664.5 362 95.3
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 1.9e-188 663.3 617 61.8
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 3.2e-188 662.5 591 61.1
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 5.4e-188 661.8 616 59.7
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 2.1e-187 659.8 613 59.9
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 3.5e-187 659.1 605 60.3
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 1.7e-186 656.8 630 58.1
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 6.6e-186 654.8 634 58.4
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 9.5e-185 651.0 615 59.7
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 4.7e-184 648.7 618 58.4
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 1.1e-183 647.5 627 57.3
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 1.8e-183 646.7 613 58.9
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 3.1e-183 646.0 606 59.2
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 8.9e-183 644.4 619 59.1
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 2.6e-182 642.9 616 58.0
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 4.4e-182 642.1 613 58.9
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 5.8e-182 641.7 616 57.8
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 5.8e-182 641.7 616 57.8
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 3.7e-181 639.0 395 85.3
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 5.4e-180 635.2 627 56.5
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 5.4e-180 635.2 617 58.2
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 2.1e-179 633.3 617 58.0
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 5.1e-178 628.6 628 56.5
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 5.1e-170 602.1 515 62.9
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 1.1e-167 594.3 612 55.7
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 1.5e-166 590.5 616 54.4
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 5.1e-162 575.5 535 60.2
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 9.6e-161 571.2 558 60.8
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 5.8e-158 562.0 650 50.3
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 1.3e-157 560.8 546 59.5
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 1.5e-150 537.3 593 52.1
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 2.5e-148 530.0 624 50.8
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 3.5e-147 526.2 612 51.0
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 9.6e-145 518.1 665 47.2
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 3.4e-142 509.6 620 48.9
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 3.8e-141 506.1 604 48.8
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 6.1e-139 498.8 522 53.8
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 7.9e-139 498.4 622 49.5
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 2.5e-132 476.9 640 49.5
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 2.3e-130 470.3 482 57.1
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 1.0e-122 444.9 517 51.3
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 1.8e-119 434.1 520 50.6
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 1.2e-105 388.3 427 52.5
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 1.8e-103 380.9 429 52.4
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 3.8e-101 373.2 615 39.5
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 5.5e-100 369.4 338 59.8
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 1.8e-98 364.4 633 40.1
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 2.2e-88 330.9 266 65.0
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.7e-85 321.2 442 46.6
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 2.9e-85 320.5 614 36.5
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 3.9e-85 320.1 203 78.8
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 4.4e-81 306.6 244 67.2
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 5.2e-74 283.1 244 61.1
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 5.2e-74 283.1 561 36.7
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 6.4e-64 249.6 149 75.8
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 6.4e-64 249.6 761 30.7
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 8.3e-64 249.2 446 40.8
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 7.1e-63 246.1 429 41.5
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 4.7e-59 233.4 446 38.6
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 2.3e-45 188.0 390 38.7
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 3.0e-45 187.6 581 29.3
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 5.1e-45 186.8 538 28.8
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 7.3e-44 183.0 152 61.8
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 7.9e-38 162.9 165 52.7
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 8.1e-35 152.9 539 28.4
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 1.3e-32 145.6 246 45.1
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 1.1e-20 105.9 60 76.7
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 1.5e-20 105.5 84 60.7
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 1.6e-19 102.1 263 32.7
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 1.1e-18 99.4 67 68.7
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 9.0e-18 96.3 82 68.3
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 1.3e-08 65.9 40 72.5
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 2.2e-08 65.1 75 53.3
SGA_v2.0_scaffold48G17990 Striga asiatica HOM05D004635 ORTHO05D405620 9.4e-07 59.7 83 47.0
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 4.7e-06 57.4 52 61.5


User provided reference genes

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