Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g06680 Fragaria vesca HOM05D006779 ORTHO05D008491 1.2e-130 469.9 256 100.0
FAN24G0787 Fragaria x ananassa HOM05D006779 ORTHO05D008491 2.7e-130 468.8 256 99.6
FAN15G3147 Fragaria x ananassa HOM05D006779 ORTHO05D008491 4.3e-128 461.5 256 97.7
FAN20G2937 Fragaria x ananassa HOM05D006779 ORTHO05D008491 9.7e-128 460.3 256 97.3
RcHm_v2.0_Chr6g0258731 Rosa chinensis HOM05D006779 ORTHO05D008491 5.3e-118 427.9 256 89.8
Prupe.8G119200 Prunus persica HOM05D006779 ORTHO05D008491 5.7e-96 354.8 256 78.5
MD05G1075500 Malus domestica HOM05D006779 ORTHO05D008491 2.3e-92 342.8 256 77.0
CiPaw.05G054000 Carya illinoinensis HOM05D006779 ORTHO05D008491 3.0e-89 332.4 254 72.8
Sabra09G0080600 Salix brachista HOM05D006779 ORTHO05D008491 8.3e-87 324.3 253 73.9
Potri.009G105500 Populus trichocarpa HOM05D006779 ORTHO05D008491 5.4e-86 321.6 253 73.5
Haze_01903 Corylus avellana HOM05D006779 ORTHO05D008491 7.0e-86 321.2 253 72.7
QL11p037315 Quercus lobata HOM05D006779 ORTHO05D008491 7.8e-85 317.8 253 71.1
CsaV3_7G008730 Cucumis sativus L. HOM05D006779 ORTHO05D008491 1.3e-84 317.0 254 70.5
Sed0011670 Sechium edule HOM05D006779 ORTHO05D008491 4.3e-83 312.0 254 69.7
Dinv23582 Davidia involucrata HOM05D006779 ORTHO05D008491 3.0e-81 305.8 263 67.7
PGR142G0644 Punica granatum HOM05D006779 ORTHO05D008491 3.0e-81 305.8 256 67.6
GSVIVG01031784001 Vitis vinifera HOM05D006779 ORTHO05D008491 3.0e-81 305.8 258 69.4
CSS0011815 Camellia sinensis var. sinensis HOM05D000591 ORTHO05D000579 9.8e-80 300.8 256 64.5
Manes.15G142500 Manihot esculenta HOM05D006779 ORTHO05D008491 3.2e-78 295.8 253 68.8
Actinidia00459 Actinidia chinensis HOM05D006779 ORTHO05D008491 7.0e-78 294.7 259 61.8
Dinv42131 Davidia involucrata HOM05D006779 ORTHO05D008491 2.7e-77 292.7 262 65.3
Thecc.02G097400 Theobroma cacao HOM05D006779 ORTHO05D008491 2.7e-77 292.7 252 70.6
Eucgr.I01169 Eucalyptus grandis HOM05D006779 ORTHO05D008491 7.8e-77 291.2 252 65.5
CANSAT25G0176 Cannabis sativa HOM05D006779 ORTHO05D008491 2.3e-76 289.7 253 67.6
Glyma.01G146900 Glycine max HOM05D006779 ORTHO05D008491 4.3e-75 285.4 252 65.9
Glyma.10G112900 Glycine max HOM05D006779 ORTHO05D008491 4.3e-75 285.4 252 65.9
Phvul.007G247000 Phaseolus vulgaris HOM05D006779 ORTHO05D008491 7.3e-75 284.6 252 63.5
Cc02_g18560 Coffea canephora HOM05D006779 ORTHO05D008491 1.2e-74 283.9 260 63.5
Atru.chr5.2773 Acer truncatum HOM05D006779 ORTHO05D008491 2.8e-74 282.7 260 66.9
TWI79G0004 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 2.8e-74 282.7 255 66.7
ClCG02G005780 Citrullus lanatus HOM05D006779 ORTHO05D008491 6.2e-74 281.6 296 59.1
PGSC0003DMG400025811 Solanum tuberosum HOM05D006779 ORTHO05D008491 6.2e-74 281.6 262 63.0
Lalb_Chr09g0328181 Lupinus albus HOM05D006779 ORTHO05D008491 8.0e-74 281.2 252 65.1
Ciclev10029963m.g Citrus clementina HOM05D006779 ORTHO05D008491 1.4e-73 280.4 260 67.3
Sopen01g050660 Solanum pennellii HOM05D006779 ORTHO05D008491 2.3e-73 279.6 262 62.2
arahy.Tifrunner.gnm1.ann1.8ZG09Z Arachis hypogaea HOM05D006779 ORTHO05D008491 3.1e-73 279.3 259 65.3
Solyc01g108430.3 Solanum lycopersicum HOM05D006779 ORTHO05D008491 4.0e-73 278.9 262 62.6
Gorai.005G240600 Gossypium raimondii HOM05D006779 ORTHO05D008491 8.9e-73 277.7 253 66.4
TWI31G0027 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 8.9e-73 277.7 255 66.7
Gohir.D02G212600 Gossypium hirsutum HOM05D006779 ORTHO05D008491 2.6e-72 276.2 253 66.0
Nitab4.5_0004334g0110 Nicotiana tabacum HOM05D006779 ORTHO05D008491 5.8e-72 275.0 262 62.6
Gohir.A03G191700 Gossypium hirsutum HOM05D006779 ORTHO05D008491 7.5e-72 274.6 253 66.0
Oeu064516.1 Olea europaea HOM05D006779 ORTHO05D008491 9.8e-72 274.2 263 61.2
vmacro02181 Vaccinium macrocarpon HOM05D006779 ORTHO05D008491 1.3e-71 273.9 293 54.3
Glyma.02G159500 Glycine max HOM05D006779 ORTHO05D008491 2.9e-71 272.7 252 63.9
arahy.Tifrunner.gnm1.ann1.T066AP Arachis hypogaea HOM05D006779 ORTHO05D008491 3.7e-71 272.3 254 64.6
Rhsim11G0168500 Rhododendron simsii HOM05D006779 ORTHO05D008491 4.1e-70 268.9 289 53.3
CAN.G322.16 Capsicum annuum HOM05D006779 ORTHO05D008491 4.6e-69 265.4 253 63.6
Sc18g0004890 Simmondsia chinensis HOM05D006779 ORTHO05D008491 1.0e-68 264.2 252 63.9
FAN20G1913 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.7e-68 263.5 155 95.5
Migut.B00314 Erythranthe guttata HOM05D006779 ORTHO05D008491 2.3e-68 263.1 265 61.9
Peaxi162Scf00016g01637 Petunia axillaris HOM05D006779 ORTHO05D008491 3.0e-68 262.7 249 64.3
Nitab4.5_0005583g0020 Nicotiana tabacum HOM05D006779 ORTHO05D008491 3.9e-68 262.3 262 59.9
Aa31LG10G4420 Aethionema arabicum HOM05D006779 ORTHO05D008491 8.6e-68 261.2 252 63.1
COL.COLO4_32686 Corchorus olitorius HOM05D006779 ORTHO05D008491 8.6e-68 261.2 252 65.9
Sp1g36470 Schrenkiella parvula HOM05D006779 ORTHO05D008491 1.5e-67 260.4 254 61.8
SalBow6G0615 Salvia bowleyana HOM05D006779 ORTHO05D008491 1.9e-67 260.0 264 60.2
Nn5g30192 Nelumbo nucifera HOM05D006779 ORTHO05D008491 2.5e-67 259.6 268 60.1
MSTRG.16763 Avicennia marina HOM05D006779 ORTHO05D008491 7.3e-67 258.1 253 61.3
DCAR_029018 Daucus carota HOM05D000144 ORTHO05D003364 1.2e-66 257.3 263 62.0
Thhalv10011741m.g Eutrema salsugineum HOM05D006779 ORTHO05D008491 1.2e-66 257.3 254 62.6
arahy.Tifrunner.gnm1.ann1.QJKD6Y Arachis hypogaea HOM05D006779 ORTHO05D008491 1.6e-66 256.9 259 62.9
MBI02_g21199_MAGBIO Magnolia biondii HOM05D006779 ORTHO05D008491 1.1e-65 254.2 274 57.7
Lj5C207T4 Lonicera japonica HOM05D006779 ORTHO05D008491 2.3e-65 253.1 263 59.7
Psat7g121840 Pisum sativum HOM05D006779 ORTHO05D008491 3.1e-65 252.7 254 62.6
Ca_18655_v3 Cicer arietinum L. HOM05D006779 ORTHO05D008491 6.8e-65 251.5 252 61.9
Aqoxy6G01411 Aquilegia oxysepala HOM05D006779 ORTHO05D008491 1.2e-64 250.8 264 57.2
SGA_v2.0_scaffold90G27693 Striga asiatica HOM05D006779 ORTHO05D008491 1.5e-64 250.4 262 55.0
SGA_v2.0_scaffold90G27688 Striga asiatica HOM05D006779 ORTHO05D008491 3.7e-63 245.7 262 54.2
unitig_60.g25783 Utricularia gibba HOM05D006779 ORTHO05D008491 8.3e-63 244.6 256 59.4
AT1G49590 Arabidopsis thaliana HOM05D006779 ORTHO05D008491 2.4e-62 243.0 254 60.6
EL10Ac3g06870 Beta vulgaris HOM05D006779 ORTHO05D008491 9.2e-62 241.1 253 59.3
Lj4g0006122 Lotus japonicus HOM05D006779 ORTHO05D008491 1.6e-61 240.4 252 60.7
AUR62034187 Chenopodium quinoa HOM05D006779 ORTHO05D008491 5.1e-60 235.3 252 59.1
Hund00325 Selenicereus undatus HOM05D006779 ORTHO05D008491 6.6e-60 235.0 252 57.9
Carub.0001s3879 Capsella rubella HOM05D006779 ORTHO05D008491 1.1e-59 234.2 255 59.6
A06p03540 Brassica napus HOM05D006779 ORTHO05D008491 3.3e-59 232.6 255 58.0
ECA234G4762 Erigeron canadensis HOM05D006779 ORTHO05D008491 3.3e-59 232.6 253 55.7
HPP92_004257 Vanilla planifolia HOM05D006779 ORTHO05D008491 5.6e-59 231.9 263 56.7
PSO541G4058 Papaver somniferum HOM05D006779 ORTHO05D008491 9.5e-59 231.1 264 57.6
BolC6t35591H Brassica oleracea HOM05D006779 ORTHO05D008491 2.8e-58 229.6 252 57.5
MELO3C018438.2 Cucumis melo HOM05D006779 ORTHO05D008491 1.1e-57 227.6 208 66.8
BraA06t23562Z Brassica rapa HOM05D006779 ORTHO05D008491 3.1e-57 226.1 253 57.3
Ah.04g152710 Amaranthus hybridus HOM05D006779 ORTHO05D008491 8.9e-57 224.6 249 55.0
AUR62022456 Chenopodium quinoa HOM05D006779 ORTHO05D008491 8.9e-57 224.6 292 52.4
PSO675G5018 Papaver somniferum HOM05D006779 ORTHO05D008491 1.3e-55 220.7 264 56.1
Medtr4g086640 Medicago truncatula HOM05D006779 ORTHO05D008491 2.1e-53 213.4 253 56.5
HanXRQChr10g0303251 Helianthus annuus HOM05D006779 ORTHO05D008491 1.7e-52 210.3 254 52.8
BcaNung06359 Brassica carinata HOM05D006779 ORTHO05D008491 2.3e-52 209.9 255 53.7
AL1G56960 Arabidopsis lyrata HOM05D006779 ORTHO05D008491 6.6e-52 208.4 266 54.1
Lsat_1_v5_gn_5_113321 Lactuca sativa HOM05D006779 ORTHO05D008491 7.3e-51 204.9 257 47.9
SHI05379 Sapria himalayana HOM05D006779 ORTHO05D008491 2.4e-49 199.9 252 52.4
CDE06G1966 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 3.5e-45 186.0 254 47.2
ATR0097G032 Amborella trichopoda HOM05D006779 ORTHO05D008491 3.1e-41 172.9 245 44.9
Zm00001eb373090 Zea mays HOM05D006779 ORTHO05D008491 1.5e-40 170.6 257 49.8
Mapoly0157s0003 Marchantia polymorpha HOM05D006779 ORTHO05D008491 3.8e-39 166.0 302 44.4
C06p04620 Brassica napus HOM05D006779 ORTHO05D008491 1.2e-37 161.0 209 55.5
TAR628G0388 Trochodendron aralioides HOM05D006779 ORTHO05D008491 2.3e-36 156.8 111 71.2
CSS0024784 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 4.8e-34 149.1 189 49.2
CSS0021002 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 2.6e-32 143.3 189 48.7
Cpa.g.sc62.36 Carica papaya HOM05D006779 ORTHO05D008491 3.4e-32 142.9 101 71.3
AagrBONN_evm.TU.Sc2ySwM_344.4302 Anthoceros agrestis HOM05D006779 ORTHO05D008491 5.8e-32 142.1 288 39.9
HPP92_004235 Vanilla planifolia HOM05D006779 ORTHO05D008491 1.7e-31 140.6 217 51.2
Pp3c14_26080 Physcomitrium patens HOM05D006779 ORTHO05D008491 2.1e-29 133.7 293 41.0
SMO367G0139 Selaginella moellendorffii HOM05D006779 ORTHO05D008491 6.0e-29 132.1 284 38.7
CARHR039640 Cardamine hirsuta HOM05D006779 ORTHO05D008491 1.5e-27 127.5 151 59.6
TPR.G23531 Trifolium pratense HOM05D006779 ORTHO05D008491 3.1e-25 119.8 154 53.9
CBR_g17671 Chara braunii HOM05D006779 ORTHO05D008491 4.0e-25 119.4 337 35.0
TPR.G23511 Trifolium pratense HOM05D006779 ORTHO05D008491 7.6e-24 115.2 70 80.0
Os06g0215200 Oryza sativa ssp. japonica HOM05D006779 ORTHO05D008491 1.4e-22 110.9 70 75.7
AUR62042088 Chenopodium quinoa HOM05D006779 ORTHO05D008491 3.9e-20 102.8 204 45.6
CSS0022737 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.1e-19 101.3 179 40.2
CDE03G0027 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 1.6e-18 97.4 254 33.5
CSS0034996 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 6.3e-18 95.5 189 38.6
CSS0005405 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 6.9e-17 92.0 150 42.0
CSS0011003 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 6.9e-17 92.0 150 42.0
TAR628G1516 Trochodendron aralioides HOM05D006779 ORTHO05D008491 1.2e-13 81.3 121 45.5
MD10G1090400 Malus domestica HOM05D006779 ORTHO05D008491 2.0e-11 73.9 89 55.1
Ah.08g219340 Amaranthus hybridus HOM05D006779 ORTHO05D008491 6.9e-09 65.5 95 46.3
EL10Ac9g20940 Beta vulgaris HOM05D002686 ORTHO05D003222 5.0e-07 59.3 61 59.0


User provided reference genes

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