Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 2617.8 1276 100.0
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 2565.4 1302 96.9
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 2553.1 1276 97.8
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 2548.9 1276 97.3
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 2547.3 1275 97.4
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 2441.0 1276 93.3
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 2210.6 1274 83.8
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 2202.2 1275 84.2
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 2007.3 1277 76.0
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1998.0 1280 75.7
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1993.0 1276 75.9
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1991.5 1278 75.8
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1990.3 1278 75.4
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1973.0 1274 75.3
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1966.4 1274 75.2
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1962.2 1274 75.0
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1946.0 1276 73.8
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1944.5 1277 74.6
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1928.3 1278 73.9
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1921.4 1274 72.4
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1920.2 1283 73.7
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1918.7 1277 73.6
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1913.3 1273 72.5
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1911.3 1273 72.2
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1910.6 1277 73.4
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1909.0 1275 73.3
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1907.5 1239 76.1
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1902.1 1275 71.9
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1885.9 1276 70.7
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1877.8 1275 70.7
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1871.3 1279 71.4
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1870.5 1275 70.5
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1869.7 1276 70.8
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1864.0 1276 70.7
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1862.0 1274 70.6
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1850.9 1273 71.1
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1848.6 1275 70.6
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1847.4 1275 70.3
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1846.2 1274 70.3
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1844.7 1275 70.6
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1843.6 1283 70.5
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1839.3 1289 70.1
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1837.8 1273 70.3
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1828.1 1275 70.5
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1820.1 1275 69.5
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1815.4 1275 69.3
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1786.2 1277 68.8
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1777.3 1286 68.0
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1776.1 1280 68.5
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1770.0 1283 67.7
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1765.7 1244 68.9
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1765.4 1288 67.5
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1759.6 1031 83.3
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1759.2 1282 67.5
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1753.8 1279 67.2
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1746.5 1274 67.6
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1744.6 1377 62.7
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1734.9 1352 63.1
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1732.6 1278 66.8
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1731.5 1273 67.0
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1728.8 938 90.9
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1728.4 1278 66.8
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1726.8 1276 65.8
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1724.9 1280 66.6
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1719.1 1283 66.3
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1719.1 1281 66.3
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1716.8 1280 66.6
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1716.4 1272 64.9
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1704.9 1277 65.0
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1702.6 1278 66.3
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1698.3 1287 66.0
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1698.3 1275 64.8
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1696.8 1275 64.3
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1692.9 1289 65.9
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1691.0 1289 65.7
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1686.4 1295 65.6
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1685.2 1291 65.8
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1677.5 1273 65.8
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1676.0 1297 65.5
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1669.1 1274 64.1
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1669.1 1274 64.1
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1666.7 1229 67.4
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1665.6 1366 61.4
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1663.7 1190 69.5
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1638.6 939 87.5
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1634.8 1185 67.8
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1630.2 1292 62.5
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1580.1 1275 63.4
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1578.9 1044 73.1
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1567.4 1278 61.6
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1551.2 939 84.0
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1516.9 1044 70.3
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1471.8 1278 57.7
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1471.8 1274 57.1
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1470.7 1050 68.4
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1440.2 1276 59.2
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1434.5 1296 55.8
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1375.1 689 96.1
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1370.1 1277 57.1
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1334.7 1231 55.6
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1307.0 1176 56.9
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1245.3 811 75.8
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1195.3 830 69.4
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1186.0 880 65.2
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1175.6 832 67.9
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1172.5 834 68.3
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 0.0e+00 1136.3 1201 50.0
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1132.1 1344 47.3
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1124.4 1269 48.0
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1123.2 1322 47.1
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 0.0e+00 1099.7 779 68.4
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1099.3 761 69.6
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1092.4 550 95.3
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1087.0 1337 46.4
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 3.0e-302 1042.3 1153 50.1
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 1.2e-295 1020.4 761 67.0
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 7.9e-287 991.1 500 96.4
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 2.6e-242 843.2 1466 36.8
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 2.2e-225 786.9 623 62.6
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.1e-219 768.1 615 59.7
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 5.4e-195 686.0 503 64.4
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 2.0e-189 667.5 470 70.6
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 1.9e-139 501.5 321 73.8
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 2.8e-135 487.6 401 62.3
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 1.1e-131 475.7 364 66.8
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 2.5e-123 448.0 366 61.7
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 1.8e-102 378.6 1414 26.9
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 3.9e-84 317.8 261 60.9
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 8.1e-82 310.1 1232 24.8
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 5.2e-65 254.2 156 83.3
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 1.8e-52 212.6 259 49.4
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.0e-44 186.8 154 59.7
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 1.0e-31 143.7 109 67.9
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 4.5e-24 118.2 78 67.9
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 3.4e-16 92.0 68 63.2
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 3.2e-14 85.5 46 87.0
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 3.9e-12 78.6 53 71.7
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 8.8e-12 77.4 53 69.8
Cre03.g188750 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D028824 2.0e-11 76.3 146 35.6
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 1.7e-10 73.2 95 40.0
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 2.2e-10 72.8 56 62.5
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 1.1e-09 70.5 50 64.0
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 1.8e-09 69.7 39 82.1
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 2.4e-09 69.3 48 68.8
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 4.1e-09 68.6 48 68.8
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 5.3e-09 68.2 48 68.8
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 5.3e-09 68.2 48 68.8
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 9.1e-09 67.4 48 66.7
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 9.1e-09 67.4 48 66.7
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 9.1e-09 67.4 48 66.7
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 9.1e-09 67.4 48 66.7
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 9.1e-09 67.4 48 66.7
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 2.0e-08 66.2 152 30.3
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 2.6e-08 65.9 80 46.2
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 1.3e-07 63.5 133 34.6
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 1.3e-07 63.5 67 44.8
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 1.9e-06 59.7 181 29.8
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 3.2e-06 58.9 95 36.8
A05p26160 Brassica napus HOM05D004874 ORTHO05D014502 5.5e-06 58.2 50 56.0
TWI59G1118 Tripterygium wilfordii HOM05D003906 ORTHO05D004776 5.5e-06 58.2 143 26.6


User provided reference genes

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