Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 2611.6 1271 100.0
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 2561.2 1271 98.2
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 2549.6 1276 97.3
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 2547.7 1270 97.5
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 2513.4 1302 94.5
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 2426.7 1276 92.9
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 2196.4 1274 83.4
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 2187.5 1275 83.7
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1992.2 1277 75.6
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1982.2 1280 75.2
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1975.7 1276 75.5
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1969.9 1278 74.8
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1969.5 1278 75.0
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1956.8 1274 74.7
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1950.3 1274 74.6
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1945.2 1274 74.4
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1927.1 1276 73.3
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1917.1 1277 73.7
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1908.3 1278 73.1
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1902.1 1277 73.1
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1897.9 1274 71.8
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1894.4 1275 73.0
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1892.9 1283 72.8
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1890.9 1273 71.9
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1889.4 1273 71.6
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1885.9 1277 72.6
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1882.8 1239 75.3
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1878.6 1275 71.3
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1864.4 1276 70.1
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1856.6 1275 70.2
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1855.9 1279 70.9
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1850.1 1274 70.4
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1847.4 1276 70.2
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1846.2 1275 69.8
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1844.3 1276 70.2
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1843.2 1273 71.0
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1842.4 1269 70.4
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1835.5 1283 69.8
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1832.0 1273 70.3
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1828.9 1275 70.3
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1826.6 1275 69.6
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1825.4 1275 70.3
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1824.7 1289 69.7
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1809.7 1275 70.0
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1793.1 1275 68.6
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1788.5 1275 68.4
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1773.1 1277 68.4
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1759.2 1286 67.3
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1759.2 1277 67.7
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1755.3 1283 67.3
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1751.5 1244 68.5
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1750.3 1288 67.1
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1747.6 1031 83.0
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1746.1 1282 67.2
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1736.9 1279 66.6
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1734.9 1377 62.7
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1733.0 1274 67.3
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1730.7 1278 66.7
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1729.9 938 91.0
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1727.6 1352 63.0
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1720.7 1268 66.9
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1712.2 1278 66.4
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1708.7 1280 66.1
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1708.0 1276 65.4
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1703.7 1273 66.8
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1703.0 1272 64.5
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1702.2 1283 65.8
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1699.5 1280 66.0
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1699.5 1281 65.7
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1689.1 1277 64.4
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1684.1 1275 64.3
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1683.3 1275 64.0
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1677.1 1287 65.3
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1674.4 1289 65.2
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1672.5 1289 65.0
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1667.9 1295 64.9
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1666.4 1365 61.5
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1666.0 1290 65.0
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1661.4 1273 65.1
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1656.7 1297 64.8
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1655.6 1274 63.9
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1654.8 1274 63.8
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1651.7 1228 66.8
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1644.8 1190 68.7
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1637.5 939 87.5
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1626.7 1185 67.7
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1608.6 1292 61.8
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1575.5 1044 72.8
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1558.1 1274 62.6
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1550.0 939 84.0
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1547.7 1278 61.3
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1519.6 1044 70.3
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1469.5 1048 68.3
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1459.1 1278 57.1
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1447.2 1271 56.5
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1422.9 1297 55.5
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1416.7 1276 58.3
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1381.7 689 96.7
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1353.2 1277 56.5
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1312.7 1230 54.7
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1292.7 1176 56.5
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1232.6 811 74.8
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1192.6 830 69.3
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1183.7 880 65.2
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1174.5 832 68.0
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1171.4 833 68.4
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1126.7 1343 47.0
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 0.0e+00 1121.7 1202 49.2
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1111.7 1322 46.7
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1109.7 1268 47.2
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 0.0e+00 1099.0 779 68.5
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1094.0 544 96.7
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1086.6 761 69.3
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1077.0 1336 45.7
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 4.4e-298 1028.5 1153 49.3
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 1.4e-291 1006.9 761 66.5
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 4.1e-288 995.3 500 96.6
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 2.6e-242 843.2 1468 36.7
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 9.7e-221 771.5 623 62.0
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 4.5e-218 762.7 615 59.2
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 6.0e-194 682.6 503 64.0
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 3.0e-185 653.7 470 69.1
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 6.9e-134 483.0 401 61.8
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 7.7e-133 479.6 321 71.0
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 9.7e-128 462.6 365 65.8
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 6.3e-119 433.3 366 60.1
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 1.7e-103 382.1 1413 27.0
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 1.0e-81 309.7 1232 24.6
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 1.5e-80 305.8 261 59.8
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 8.9e-65 253.4 129 96.1
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 1.7e-52 212.6 259 49.4
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.3e-44 186.4 154 59.1
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 3.5e-29 135.2 109 64.2
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 1.0e-23 117.1 78 66.7
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 7.7e-16 90.9 68 61.8
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 3.2e-14 85.5 46 87.0
Cre03.g188750 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D028824 2.0e-11 76.3 146 35.6
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 3.7e-10 72.0 95 40.0
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 2.4e-09 69.3 50 62.0
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 4.1e-09 68.6 39 79.5
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 1.2e-08 67.0 67 47.8
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 2.0e-08 66.2 152 30.3
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 2.6e-08 65.9 87 43.7
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 7.7e-08 64.3 53 64.2
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 7.7e-08 64.3 53 64.2
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 2.2e-07 62.8 45 64.4
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 3.8e-07 62.0 45 64.4
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 3.8e-07 62.0 45 64.4
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 3.8e-07 62.0 45 64.4
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 3.8e-07 62.0 45 64.4
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 3.8e-07 62.0 45 64.4
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 3.8e-07 62.0 133 34.6
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 5.0e-07 61.6 45 64.4
A05p26160 Brassica napus HOM05D004874 ORTHO05D014502 5.0e-07 61.6 54 57.4
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 5.0e-07 61.6 45 64.4
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 5.0e-07 61.6 44 65.9
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 5.0e-07 61.6 45 64.4
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 2.5e-06 59.3 181 29.8
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 5.5e-06 58.2 95 36.8


User provided reference genes

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