Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 8.3e-188 660.2 335 100.0
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 7.3e-176 620.5 367 88.3
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 6.2e-175 617.5 379 86.0
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 1.1e-147 526.9 390 74.4
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.8e-97 360.1 312 67.9
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 4.0e-89 332.4 394 51.8
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 1.6e-82 310.5 404 49.5
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 5.2e-73 278.9 399 46.1
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 1.2e-72 277.7 400 45.8
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 1.6e-69 267.3 410 45.9
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 7.8e-69 265.0 410 44.4
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 5.1e-68 262.3 399 44.9
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 4.7e-66 255.8 378 47.4
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 1.1e-65 254.6 383 45.2
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 2.2e-63 246.9 410 41.7
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 8.4e-63 245.0 386 43.0
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 2.1e-61 240.4 434 41.2
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 2.7e-61 240.0 366 46.7
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 3.0e-60 236.5 396 41.9
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 1.1e-57 228.0 389 42.7
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 1.1e-57 228.0 462 39.4
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 2.4e-57 226.9 396 41.7
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 6.9e-57 225.3 415 39.8
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 4.4e-56 222.6 404 41.6
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 5.8e-56 222.2 384 40.4
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 7.6e-56 221.9 385 41.0
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 2.2e-55 220.3 406 41.1
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 1.6e-53 214.2 384 40.9
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 1.4e-49 201.1 390 39.2
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 5.3e-49 199.1 382 39.3
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 5.3e-49 199.1 388 39.4
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 5.8e-48 195.7 395 38.2
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 1.3e-47 194.5 410 37.1
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 1.3e-47 194.5 389 38.3
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 1.7e-47 194.1 405 37.5
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 3.8e-47 193.0 391 39.4
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 4.2e-46 189.5 407 37.1
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 5.4e-46 189.1 384 37.8
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 4.6e-45 186.0 401 38.4
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 7.9e-45 185.3 391 37.9
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 6.7e-44 182.2 387 35.7
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 1.1e-43 181.4 384 37.8
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 1.9e-43 180.6 381 38.1
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 1.6e-42 177.6 431 34.1
Lalb_Chr19g0140031 Lupinus albus HOM05D007201 ORTHO05D009122 2.8e-42 176.8 361 38.8
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 4.8e-42 176.0 227 47.1
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 6.2e-42 175.6 503 32.8
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 1.2e-40 171.4 383 35.2
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 1.5e-40 171.0 433 35.3
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 4.5e-40 169.5 439 34.6
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 9.9e-40 168.3 410 34.9
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 2.2e-39 167.2 391 36.6
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 3.8e-39 166.4 399 35.6
CSS0037159 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.9e-39 166.0 294 40.8
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 1.4e-38 164.5 428 35.5
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 2.4e-38 163.7 424 34.4
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 5.5e-38 162.5 381 36.7
Medtr4g078160 Medicago truncatula HOM05D007201 ORTHO05D009122 2.1e-37 160.6 408 34.6
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 2.7e-37 160.2 433 33.5
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 3.0e-36 156.8 279 39.8
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 3.9e-36 156.4 441 33.8
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 5.1e-36 156.0 391 36.6
Aqoxy7G02518 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 9.6e-35 151.8 405 36.3
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 3.7e-34 149.8 445 32.6
ATR0626G320 Amborella trichopoda HOM05D007201 ORTHO05D009122 1.4e-33 147.9 400 35.5
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 4.0e-33 146.4 300 37.0
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 5.3e-33 146.0 428 31.3
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 1.2e-32 144.8 400 34.5
Migut.L01609 Erythranthe guttata HOM05D007201 ORTHO05D009122 2.6e-32 143.7 343 33.8
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 1.9e-30 137.5 447 31.3
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 5.5e-30 136.0 384 31.8
Oeu000954.1 Olea europaea HOM05D007201 ORTHO05D009122 1.2e-29 134.8 240 39.6
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 1.3e-28 131.3 394 32.2
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 1.8e-28 131.0 254 39.8
CDE04G0352 Ceratophyllum demersum HOM05D007201 ORTHO05D009122 5.1e-28 129.4 323 36.8
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 5.1e-28 129.4 460 30.4
Nitab4.5_0004827g0030 Nicotiana tabacum HOM05D007201 ORTHO05D009122 1.5e-27 127.9 344 34.3
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 1.5e-27 127.9 414 31.2
CSS0027553 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 3.3e-27 126.7 284 38.0
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 8.2e-26 122.1 413 31.2
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 1.5e-24 117.9 424 29.0
Aa31LG4G5550 Aethionema arabicum HOM05D007201 ORTHO05D009122 2.0e-24 117.5 407 30.5
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 2.0e-24 117.5 422 29.9
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 2.6e-24 117.1 423 29.6
Os06g0704300 Oryza sativa ssp. japonica HOM05D007201 ORTHO05D009122 4.5e-24 116.3 387 32.0
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 4.5e-24 116.3 323 29.7
Zm00001eb227240 Zea mays HOM05D007201 ORTHO05D009122 4.5e-24 116.3 403 30.5
Aqoxy37s001 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 1.0e-23 115.2 290 34.5
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 1.7e-23 114.4 234 38.9
FAN17G2523 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.7e-23 114.4 60 93.3
FAN17G0247 Fragaria x ananassa HOM05D007201 ORTHO05D009122 8.5e-23 112.1 178 47.2
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 1.1e-22 111.7 413 29.5
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 1.6e-21 107.8 436 26.6
ClCG03G010480 Citrullus lanatus HOM05D007201 ORTHO05D009122 7.9e-21 105.5 219 38.8
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 1.8e-20 104.4 354 31.1
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 2.5e-19 100.5 432 28.7
Gohir.A05G407400 Gossypium hirsutum HOM05D007201 ORTHO05D009122 1.3e-18 98.2 227 36.6
Pp3c7_12210 Physcomitrium patens HOM05D007201 ORTHO05D009122 7.2e-14 82.4 400 28.2
Mapoly0005s0044 Marchantia polymorpha HOM05D007201 ORTHO05D009122 3.1e-09 67.0 406 27.8
CSS0038290 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.5e-08 64.7 40 70.0
CSS0018491 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.0e-08 64.3 41 68.3
Sed0005629 Sechium edule HOM05D007201 ORTHO05D009122 2.6e-08 63.9 87 44.8
arahy.Tifrunner.gnm1.ann1.IV261E Arachis hypogaea HOM05D000013 ORTHO05D000506 7.7e-08 62.4 164 33.5
CSS0012149 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 5.5e-06 56.2 62 45.2
CSS0032596 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 5.5e-06 56.2 62 45.2


User provided reference genes

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