Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G1129 Fragaria x ananassa HOM05D003203 ORTHO05D003526 7.8e-106 387.1 192 100.0
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 1.6e-98 362.8 188 96.3
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.6e-98 362.8 188 96.3
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 5.6e-96 354.4 188 94.1
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 1.4e-94 349.7 187 91.4
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 1.1e-88 330.1 187 86.6
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 3.8e-84 315.1 188 81.9
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 8.4e-84 313.9 188 81.4
FAN22G0069 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.6e-82 309.7 187 81.3
FAN17G1794 Fragaria x ananassa HOM05D003203 ORTHO05D003526 4.3e-72 275.0 161 83.2
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 1.5e-69 266.5 187 73.3
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 4.5e-69 265.0 187 73.3
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 1.1e-62 243.8 187 62.6
Lj2A1035T51 Lonicera japonica HOM05D003203 ORTHO05D003526 1.1e-62 243.8 187 66.8
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 1.4e-62 243.4 186 62.9
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 5.3e-62 241.5 187 63.6
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 1.2e-61 240.4 187 64.7
Atru.chr3.3692 Acer truncatum HOM05D003203 ORTHO05D003526 2.9e-60 235.7 187 62.6
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 2.9e-60 235.7 187 62.0
Peaxi162Scf00389g00932 Petunia axillaris HOM05D003203 ORTHO05D003526 2.9e-60 235.7 187 64.7
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 5.0e-60 235.0 187 62.0
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 5.0e-60 235.0 187 64.2
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 5.0e-60 235.0 187 61.5
Cpa.g.sc139.68 Carica papaya HOM05D003203 ORTHO05D003526 6.5e-60 234.6 188 61.7
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 6.5e-60 234.6 187 61.5
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 6.5e-60 234.6 187 62.0
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 6.5e-60 234.6 187 62.0
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 8.5e-60 234.2 187 62.0
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 8.5e-60 234.2 187 61.5
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 1.1e-59 233.8 187 62.6
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 1.1e-59 233.8 187 62.6
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.1e-59 233.8 187 63.6
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 1.4e-59 233.4 187 62.6
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 1.9e-59 233.0 187 61.0
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 1.9e-59 233.0 188 61.2
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 2.5e-59 232.6 188 62.2
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 4.2e-59 231.9 187 63.6
PGSC0003DMG400027376 Solanum tuberosum HOM05D003203 ORTHO05D003526 4.2e-59 231.9 187 63.6
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 5.5e-59 231.5 187 65.8
Duzib168G0563 Durio zibethinus HOM05D003203 ORTHO05D003526 9.4e-59 230.7 187 59.9
CAN.G553.12 Capsicum annuum HOM05D003203 ORTHO05D003526 1.2e-58 230.3 187 62.6
vmacro14071 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 1.2e-58 230.3 187 62.0
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 4.6e-58 228.4 187 63.6
CAN.G352.39 Capsicum annuum HOM05D003203 ORTHO05D003526 6.1e-58 228.0 187 62.0
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 6.1e-58 228.0 187 61.0
Nitab4.5_0001802g0120 Nicotiana tabacum HOM05D003203 ORTHO05D003526 6.1e-58 228.0 186 61.8
Actinidia15612 Actinidia chinensis HOM05D003203 ORTHO05D003526 1.0e-57 227.3 184 62.5
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 1.0e-57 227.3 187 61.5
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 1.0e-57 227.3 187 62.0
Nitab4.5_0000848g0100 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.4e-57 226.9 187 62.0
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 1.8e-57 226.5 187 59.9
Potri.016G083100 Populus trichocarpa HOM05D003203 ORTHO05D003526 1.8e-57 226.5 187 62.6
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 2.3e-57 226.1 187 57.8
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 2.3e-57 226.1 187 61.5
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 6.7e-57 224.6 187 60.4
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 6.7e-57 224.6 187 57.2
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 6.7e-57 224.6 187 60.4
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 8.8e-57 224.2 187 58.8
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 8.8e-57 224.2 187 61.5
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 8.8e-57 224.2 187 61.5
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 8.8e-57 224.2 187 59.4
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 8.8e-57 224.2 187 59.9
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 1.1e-56 223.8 187 59.4
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 1.1e-56 223.8 187 59.9
CDE07G0939 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 1.5e-56 223.4 187 59.4
Gohir.A05G074700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 3.3e-56 222.2 187 56.7
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 3.3e-56 222.2 187 59.9
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 5.7e-56 221.5 187 59.4
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 5.7e-56 221.5 187 62.0
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 1.3e-55 220.3 187 60.4
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 2.2e-55 219.5 187 57.8
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 2.2e-55 219.5 189 58.7
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 2.2e-55 219.5 189 58.7
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 2.2e-55 219.5 189 58.7
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 4.8e-55 218.4 189 58.2
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 4.8e-55 218.4 189 58.2
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 4.8e-55 218.4 189 57.7
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 4.8e-55 218.4 187 57.2
Sp1g06590 Schrenkiella parvula HOM05D003203 ORTHO05D003526 4.8e-55 218.4 189 57.7
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 4.8e-55 218.4 187 56.7
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 1.4e-54 216.9 189 57.1
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 3.1e-54 215.7 187 59.4
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 5.3e-54 214.9 187 56.7
Nitab4.5_0010520g0020 Nicotiana tabacum HOM05D003203 ORTHO05D003526 5.3e-54 214.9 187 59.4
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 5.3e-54 214.9 187 56.7
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 6.9e-54 214.5 189 56.6
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 1.2e-53 213.8 189 56.1
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 1.2e-53 213.8 189 56.6
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 1.5e-53 213.4 189 56.1
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 1.5e-53 213.4 187 58.3
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 7.7e-53 211.1 187 57.8
DCAR_024905 Daucus carota HOM05D003203 ORTHO05D003526 1.0e-52 210.7 184 55.4
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 1.3e-52 210.3 189 56.1
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 1.7e-52 209.9 189 56.6
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 1.7e-52 209.9 189 55.0
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 2.2e-52 209.5 189 56.1
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 5.0e-52 208.4 189 56.1
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 6.5e-52 208.0 187 56.1
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 1.4e-51 206.8 187 55.6
Aqoxy3G02870 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 1.9e-51 206.5 185 53.5
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 4.2e-51 205.3 187 55.6
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 5.5e-51 204.9 183 55.7
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 7.2e-51 204.5 194 56.7
Nitab4.5_0004347g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 7.2e-51 204.5 186 55.9
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 7.2e-51 204.5 187 54.0
AL7G46960 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 9.4e-51 204.1 189 55.6
AL7G46970 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 9.4e-51 204.1 189 55.6
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 9.4e-51 204.1 187 53.5
HPP92_010123 Vanilla planifolia HOM05D002295 ORTHO05D002789 2.1e-50 203.0 181 54.7
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 6.1e-50 201.4 187 52.4
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 1.4e-49 200.3 187 54.5
PSO339G3960 Papaver somniferum HOM05D003203 ORTHO05D003526 1.4e-49 200.3 188 52.7
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 8.8e-49 197.6 187 55.1
HanXRQChr09g0243461 Helianthus annuus HOM05D003203 ORTHO05D003526 2.0e-48 196.4 188 53.7
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 1.3e-47 193.7 187 53.5
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 8.2e-47 191.0 188 53.7
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 4.5e-45 185.3 179 53.1
PSO765G0134 Papaver somniferum HOM05D003203 ORTHO05D003526 4.5e-45 185.3 150 60.0
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 6.5e-44 181.4 189 49.2
COL.COLO4_32909 Corchorus olitorius HOM05D003203 ORTHO05D003526 1.1e-43 180.6 115 70.4
Hma1.2p1_0559F.1_g178620 Hydrangea macrophylla HOM05D003203 ORTHO05D003526 2.7e-42 176.0 131 63.4
SpUn0840_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 9.7e-40 167.5 133 59.4
BcaC07g41967 Brassica carinata HOM05D003203 ORTHO05D003526 5.3e-38 161.8 169 51.5
SHI27633 Sapria himalayana HOM05D003203 ORTHO05D003526 1.2e-37 160.6 121 61.2
Sp3g30710 Schrenkiella parvula HOM05D003203 ORTHO05D003526 2.9e-36 156.0 117 60.7
SEGI_33151 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 1.2e-34 150.6 144 52.8
AagrBONN_evm.TU.Sc2ySwM_362.2654 Anthoceros agrestis HOM05D003203 ORTHO05D003526 4.7e-34 148.7 154 48.1
CARHR204760 Cardamine hirsuta HOM05D003203 ORTHO05D003526 1.4e-33 147.1 169 46.2
SMO223G0015 Selaginella moellendorffii HOM05D003203 ORTHO05D003526 1.2e-32 144.1 185 42.7
TWI75G1314 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 2.2e-31 139.8 138 55.8
AagrBONN_evm.TU.Sc2ySwM_342.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.4e-30 137.1 147 46.9
Thhalv10023078m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 2.2e-28 129.8 135 47.4
AagrBONN_evm.TU.Sc2ySwM_244.3 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.5e-27 127.1 135 47.4
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 1.6e-26 123.6 126 54.0
Mapoly0005s0012 Marchantia polymorpha HOM05D003203 ORTHO05D003526 8.0e-26 121.3 157 38.2
CARHR007720 Cardamine hirsuta HOM05D003203 ORTHO05D003526 5.2e-25 118.6 189 40.7
Pp3c27_2850 Physcomitrium patens HOM05D003203 ORTHO05D003526 1.3e-23 114.0 189 36.0
Dinv24671 Davidia involucrata HOM05D003203 ORTHO05D003526 6.3e-23 111.7 102 55.9
AagrBONN_evm.TU.Sc2ySwM_117.4033 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.0e-21 106.7 114 46.5
AagrBONN_evm.TU.Sc2ySwM_341.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.0e-21 106.7 114 46.5
CBR_g39406 Chara braunii HOM05D003203 ORTHO05D003526 5.9e-21 105.1 186 30.6
Cc04_g16280 Coffea canephora HOM05D003203 ORTHO05D003526 6.1e-18 95.1 110 48.2
arahy.Tifrunner.gnm1.ann1.VS5L85 Arachis hypogaea HOM05D003203 ORTHO05D003526 3.7e-07 59.3 45 68.9


User provided reference genes

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