Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 0.0e+00 1258.0 648 100.0
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 0.0e+00 1090.1 666 87.5
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 0.0e+00 1082.8 579 96.9
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 3.9e-274 948.0 673 78.9
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 2.1e-235 819.3 472 91.5
FvH4_4g00130 Fragaria vesca HOM05D006136 ORTHO05D007244 5.3e-231 804.7 462 93.1
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 2.5e-228 795.8 588 76.9
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 1.4e-146 524.2 681 51.1
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 3.8e-144 516.2 720 50.3
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 3.9e-101 373.2 780 38.3
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 1.2e-94 351.7 775 35.7
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 2.1e-94 350.9 691 39.1
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 5.2e-85 319.7 665 36.8
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 2.6e-84 317.4 666 36.0
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 3.3e-84 317.0 663 36.0
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 7.5e-84 315.8 693 37.7
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 1.3e-83 315.1 705 36.5
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 1.3e-83 315.1 676 37.3
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 2.2e-83 314.3 794 33.9
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 9.1e-82 308.9 680 35.9
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 8.5e-80 302.4 701 36.4
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 2.5e-79 300.8 802 33.7
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 9.4e-79 298.9 683 34.6
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 2.6e-76 290.8 694 35.3
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 1.7e-75 288.1 695 34.8
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 2.2e-75 287.7 729 33.3
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 2.8e-75 287.3 683 36.3
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 4.1e-74 283.5 702 32.6
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 9.1e-74 282.3 711 33.5
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 4.5e-73 280.0 707 32.8
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 2.9e-72 277.3 704 34.7
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 1.1e-71 275.4 664 34.0
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 1.9e-71 274.6 686 33.4
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 5.5e-71 273.1 695 33.5
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 1.2e-70 271.9 695 33.5
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 3.6e-70 270.4 689 34.5
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 8.0e-70 269.2 698 33.8
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 1.4e-69 268.5 723 31.5
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 4.0e-69 266.9 702 32.2
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 6.8e-69 266.2 674 33.2
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 1.2e-68 265.4 684 33.8
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 1.5e-68 265.0 692 32.2
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 7.5e-68 262.7 746 31.8
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 2.2e-67 261.2 712 34.0
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 1.1e-66 258.8 688 33.4
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 2.7e-65 254.2 664 32.2
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 3.5e-65 253.8 711 32.9
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 4.5e-65 253.4 626 34.3
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 1.0e-64 252.3 697 32.7
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 1.3e-64 251.9 747 31.7
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 1.7e-64 251.5 714 34.9
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 5.0e-64 250.0 692 30.8
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 6.6e-64 249.6 724 30.2
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 6.6e-64 249.6 723 31.8
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 3.3e-63 247.3 712 30.6
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 1.6e-62 245.0 701 30.7
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 3.6e-62 243.8 429 38.0
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 4.7e-62 243.4 705 32.6
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 6.1e-62 243.0 743 30.4
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 8.0e-62 242.7 688 32.6
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 3.0e-61 240.7 673 31.5
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 8.9e-61 239.2 763 33.0
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 1.2e-60 238.8 711 31.2
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 2.6e-60 237.7 722 31.9
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 5.8e-60 236.5 734 30.5
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 5.8e-60 236.5 711 30.8
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 9.8e-60 235.7 710 31.0
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 4.9e-59 233.4 810 29.3
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 8.3e-59 232.6 477 37.3
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 1.4e-58 231.9 784 29.8
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 1.9e-58 231.5 723 31.1
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 3.2e-58 230.7 780 29.6
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 4.1e-58 230.3 744 30.2
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 4.6e-57 226.9 772 30.1
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 1.3e-56 225.3 678 29.5
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 3.0e-56 224.2 730 30.4
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 9.5e-55 219.2 710 30.1
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 1.2e-54 218.8 735 29.9
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 8.0e-54 216.1 743 29.1
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 1.8e-53 214.9 681 30.1
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 1.8e-53 214.9 733 28.8
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 6.8e-53 213.0 756 28.6
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 8.9e-53 212.6 647 30.4
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 1.5e-52 211.8 755 29.0
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 4.4e-52 210.3 456 36.6
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 4.9e-51 206.8 483 36.0
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 6.4e-51 206.5 296 42.9
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 9.2e-50 202.6 758 28.9
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 2.3e-48 198.0 486 34.4
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 5.1e-48 196.8 656 29.1
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 6.6e-48 196.4 833 26.1
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 8.6e-48 196.1 261 44.4
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 5.6e-47 193.4 808 26.9
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 2.3e-45 188.0 653 28.6
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 1.3e-43 182.2 210 48.6
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 3.2e-42 177.6 427 34.0
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 1.7e-40 171.8 686 27.3
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 9.9e-36 156.0 622 29.1
PGR044G0304 Punica granatum HOM05D006136 ORTHO05D007244 2.8e-30 137.9 311 34.4
GSVIVG01038333001 Vitis vinifera HOM05D006136 ORTHO05D007244 8.1e-30 136.3 176 46.0
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 7.6e-28 129.8 142 52.8
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 2.2e-27 128.3 100 64.0
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 2.2e-27 128.3 705 28.1
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 4.9e-27 127.1 408 28.4
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 8.4e-27 126.3 100 62.0
Mapoly0169s0023 Marchantia polymorpha HOM05D006136 ORTHO05D007244 3.2e-26 124.4 206 38.3
Sed0020259 Sechium edule HOM05D006136 ORTHO05D007244 9.3e-26 122.9 484 29.1
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 1.2e-25 122.5 292 36.6
Solyc07g042740.3 Solanum lycopersicum HOM05D006136 ORTHO05D007244 1.4e-21 109.0 212 32.1
Pp3c1_8430 Physcomitrium patens HOM05D006136 ORTHO05D007244 5.8e-20 103.6 114 49.1
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05D006136 ORTHO05D007244 1.2e-17 95.9 342 28.9
arahy.Tifrunner.gnm1.ann1.SWI1TY Arachis hypogaea HOM05D006136 ORTHO05D007244 3.5e-17 94.4 262 33.6
Solyc07g042700.4 Solanum lycopersicum HOM05D006136 ORTHO05D007244 2.8e-14 84.7 157 40.1
Glyma.07G231200 Glycine max HOM05D003235 ORTHO05D007244 1.2e-12 79.3 75 52.0
Nitab4.5_0002310g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.5e-12 79.0 172 37.8
Hma1.2p1_2895F.1_g329976 Hydrangea macrophylla HOM05D006136 ORTHO05D007244 3.4e-12 77.8 59 62.7
CBR_g39420 Chara braunii HOM05D006136 ORTHO05D007244 1.4e-10 72.4 153 35.3
TPR.G20669 Trifolium pratense HOM05D006136 ORTHO05D007244 1.9e-10 72.0 80 56.2
VMungo1309G2339 Vigna mungo HOM05D006136 ORTHO05D007244 5.1e-08 63.9 156 35.3
Lsat_1_v5_gn_5_81880 Lactuca sativa HOM05D006136 ORTHO05D007244 8.7e-08 63.2 165 31.5
C02p13590 Brassica napus HOM05D006136 ORTHO05D007244 1.9e-07 62.0 68 48.5
BolC2t07471H Brassica oleracea HOM05D006136 ORTHO05D007244 1.9e-07 62.0 68 48.5
BcaC03g14120 Brassica carinata HOM05D009052 ORTHO05D011796 3.3e-07 61.2 194 32.0
Hund03317 Selenicereus undatus HOM05D006136 ORTHO05D007244 8.2e-06 56.6 426 23.9


User provided reference genes

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