Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1014 Fragaria x ananassa HOM05D001668 ORTHO05D210786 1.7e-76 289.3 149 100.0
FAN17G1439 Fragaria x ananassa HOM05D001668 ORTHO05D001693 1.5e-19 100.1 114 53.5
FAN22G0211 Fragaria x ananassa HOM05D001668 ORTHO05D001693 3.3e-19 99.0 114 53.5
FvH4_4g31451 Fragaria vesca HOM05D001668 ORTHO05D001693 4.3e-19 98.6 111 53.2
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 3.4e-16 89.0 74 64.9
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 9.9e-16 87.4 74 63.5
RcHm_v2.0_Chr4g0439941 Rosa chinensis HOM05D001668 ORTHO05D001693 9.9e-16 87.4 114 49.1
Prupe.1G273200 Prunus persica HOM05D001668 ORTHO05D001693 4.2e-14 82.0 111 45.0
MD16G1073700 Malus domestica HOM05D001668 ORTHO05D001693 9.3e-14 80.9 114 45.6
QL03p064359 Quercus lobata HOM05D001668 ORTHO05D001693 2.3e-12 76.3 114 45.6
Thecc.02G347300 Theobroma cacao HOM05D001668 ORTHO05D001693 2.3e-12 76.3 114 44.7
CANSAT64G1367 Cannabis sativa HOM05D001668 ORTHO05D001693 5.1e-12 75.1 115 44.3
MD13G1072900 Malus domestica HOM05D001668 ORTHO05D001693 8.7e-12 74.3 114 43.0
GSVIVG01020000001 Vitis vinifera HOM05D001668 ORTHO05D001693 4.3e-11 72.0 115 44.3
CiPaw.06G084000 Carya illinoinensis HOM05D001668 ORTHO05D001693 9.6e-11 70.9 120 44.2
PGR102G3312 Punica granatum HOM05D001668 ORTHO05D001693 2.8e-10 69.3 114 43.0
Cfa008991 Carpinus fangiana HOM05D001668 ORTHO05D001693 4.8e-10 68.6 112 42.0
Haze_12019 Corylus avellana HOM05D001668 ORTHO05D001693 4.8e-10 68.6 112 42.0
Actinidia31894 Actinidia chinensis HOM05D001668 ORTHO05D001693 2.4e-09 66.2 119 44.5
Duzib268G0629 Durio zibethinus HOM05D001668 ORTHO05D001693 2.4e-09 66.2 114 38.6
ECA233G1428 Erigeron canadensis HOM05D001668 ORTHO05D001693 2.4e-09 66.2 75 49.3
ECA233G4630 Erigeron canadensis HOM05D001668 ORTHO05D001693 2.4e-09 66.2 75 49.3
Manes.01G186400 Manihot esculenta HOM05D001668 ORTHO05D001693 2.4e-09 66.2 120 42.5
PGSC0003DMG400006556 Solanum tuberosum HOM05D001668 ORTHO05D001693 4.0e-09 65.5 111 36.0
vmacro01253 Vaccinium macrocarpon HOM05D001668 ORTHO05D001693 4.0e-09 65.5 113 40.7
MSTRG.2347 Avicennia marina HOM05D001668 ORTHO05D001693 5.3e-09 65.1 115 38.3
CiPaw.05G136400 Carya illinoinensis HOM05D001668 ORTHO05D001693 5.3e-09 65.1 114 41.2
Sopen01g006680 Solanum pennellii HOM05D001668 ORTHO05D001693 5.3e-09 65.1 111 36.0
Cpa.g.sc128.15 Carica papaya HOM05D001668 ORTHO05D001693 6.9e-09 64.7 111 40.5
Eucgr.B03436 Eucalyptus grandis HOM05D001668 ORTHO05D001693 6.9e-09 64.7 114 39.5
Solyc01g010860.3 Solanum lycopersicum HOM05D001668 ORTHO05D001693 6.9e-09 64.7 111 36.0
unitig_8.g3951 Utricularia gibba HOM05D001668 ORTHO05D001693 6.9e-09 64.7 117 38.5
Rhsim12G0063300 Rhododendron simsii HOM05D001668 ORTHO05D001693 9.0e-09 64.3 112 40.2
Dinv16638 Davidia involucrata HOM05D001668 ORTHO05D001693 1.2e-08 63.9 113 40.7
TAR622G0341 Trochodendron aralioides HOM05D001668 ORTHO05D001693 1.2e-08 63.9 114 40.4
Gorai.008G181300 Gossypium raimondii HOM05D001668 ORTHO05D001693 1.5e-08 63.5 114 37.7
Sp5g24770 Schrenkiella parvula HOM05D001668 ORTHO05D001693 1.5e-08 63.5 114 40.4
Ah.03g135160 Amaranthus hybridus HOM05D001668 ORTHO05D001693 2.0e-08 63.2 112 37.5
Thhalv10019024m.g Eutrema salsugineum HOM05D001668 ORTHO05D001693 2.0e-08 63.2 114 40.4
Gohir.A12G165300 Gossypium hirsutum HOM05D001668 ORTHO05D001693 2.0e-08 63.2 114 37.7
Manes.05G100600 Manihot esculenta HOM05D001668 ORTHO05D001693 2.0e-08 63.2 120 41.7
CARHR014710 Cardamine hirsuta HOM05D001668 ORTHO05D001693 2.6e-08 62.8 113 38.1
Lsat_1_v5_gn_8_52920 Lactuca sativa HOM05D001668 ORTHO05D001693 2.6e-08 62.8 112 39.3
Hund25249 Selenicereus undatus HOM05D001668 ORTHO05D001693 2.6e-08 62.8 114 38.6
Sc11g0001870 Simmondsia chinensis HOM05D001668 ORTHO05D001693 2.6e-08 62.8 115 40.0
AL2G28810 Arabidopsis lyrata HOM05D001668 ORTHO05D001693 3.4e-08 62.4 114 40.4
Cc11_g13090 Coffea canephora HOM05D001668 ORTHO05D001693 3.4e-08 62.4 115 35.7
Nitab4.5_0000703g0110 Nicotiana tabacum HOM05D001668 ORTHO05D001693 3.4e-08 62.4 116 37.1
Duzib251G0019 Durio zibethinus HOM05D001668 ORTHO05D001693 4.5e-08 62.0 112 39.3
Nitab4.5_0013609g0010 Nicotiana tabacum HOM05D001668 ORTHO05D001693 4.5e-08 62.0 116 36.2
Sp1g12640 Schrenkiella parvula HOM05D001668 ORTHO05D001693 4.5e-08 62.0 112 37.5
THA.LOC104822918 Tarenaya hassleriana HOM05D001668 ORTHO05D001693 4.5e-08 62.0 114 39.5
AT1G69640 Arabidopsis thaliana HOM05D001668 ORTHO05D001693 5.8e-08 61.6 114 40.4
Nitab4.5_0000141g0140 Nicotiana tabacum HOM05D001668 ORTHO05D001693 5.8e-08 61.6 111 36.9
Sp1g21930 Schrenkiella parvula HOM05D001668 ORTHO05D001693 5.8e-08 61.6 112 38.4
Gohir.D12G168400 Gossypium hirsutum HOM05D001668 ORTHO05D001693 7.6e-08 61.2 113 37.2
PSO017G6439 Papaver somniferum HOM05D001668 ORTHO05D001693 7.6e-08 61.2 111 38.7
PSO478G4028 Papaver somniferum HOM05D001668 ORTHO05D001693 7.6e-08 61.2 111 38.7
CARHR062580 Cardamine hirsuta HOM05D001668 ORTHO05D001693 9.9e-08 60.8 114 40.4
Nn3g17220 Nelumbo nucifera HOM05D001668 ORTHO05D001693 9.9e-08 60.8 114 39.5
Nitab4.5_0002635g0010 Nicotiana tabacum HOM05D001668 ORTHO05D001693 9.9e-08 60.8 111 36.9
PGSC0003DMG401025549 Solanum tuberosum HOM05D001668 ORTHO05D001693 9.9e-08 60.8 112 36.6
unitig_22.g5548 Utricularia gibba HOM05D001668 ORTHO05D001693 9.9e-08 60.8 116 39.7
Aa31LG4G11120 Aethionema arabicum HOM05D001668 ORTHO05D001693 1.3e-07 60.5 113 39.8
MSTRG.7807 Avicennia marina HOM05D001668 ORTHO05D001693 1.3e-07 60.5 113 35.4
BcaC05g25322 Brassica carinata HOM05D001668 ORTHO05D001693 1.3e-07 60.5 113 36.3
Carub.0002s1631 Capsella rubella HOM05D001668 ORTHO05D001693 1.3e-07 60.5 114 40.4
BcaC08g46413 Brassica carinata HOM05D001668 ORTHO05D001693 1.7e-07 60.1 114 39.5
C05p12040 Brassica napus HOM05D001668 ORTHO05D001693 1.7e-07 60.1 113 36.3
C06p43430 Brassica napus HOM05D001668 ORTHO05D001693 1.7e-07 60.1 114 39.5
BolC6t39419H Brassica oleracea HOM05D001668 ORTHO05D001693 1.7e-07 60.1 114 39.5
BraA07t31184Z Brassica rapa HOM05D001668 ORTHO05D001693 1.7e-07 60.1 114 39.5
Solyc05g007460.3 Solanum lycopersicum HOM05D001668 ORTHO05D001693 1.7e-07 60.1 115 36.5
Sopen05g003340 Solanum pennellii HOM05D001668 ORTHO05D001693 1.7e-07 60.1 115 36.5
TAR629G2891 Trochodendron aralioides HOM05D001668 ORTHO05D001693 1.7e-07 60.1 40 67.5
Duzib251G0527 Durio zibethinus HOM05D001668 ORTHO05D001693 2.2e-07 59.7 118 35.6
Psat2g121040 Pisum sativum HOM05D001668 ORTHO05D001693 2.2e-07 59.7 117 38.5
A02p16030 Brassica napus HOM05D001668 ORTHO05D001693 2.9e-07 59.3 114 37.7
BraA02t06663Z Brassica rapa HOM05D001668 ORTHO05D001693 2.9e-07 59.3 114 38.6
MSTRG.696 Avicennia marina HOM05D001668 ORTHO05D001693 3.8e-07 58.9 115 37.4
A07p36040 Brassica napus HOM05D001668 ORTHO05D001693 3.8e-07 58.9 114 38.6
Thhalv10008529m.g Eutrema salsugineum HOM05D001668 ORTHO05D001693 3.8e-07 58.9 114 37.7
Gohir.D02G125300 Gossypium hirsutum HOM05D001668 ORTHO05D001693 3.8e-07 58.9 114 38.6
Gorai.005G141000 Gossypium raimondii HOM05D001668 ORTHO05D001693 3.8e-07 58.9 114 38.6
AL1G26170 Arabidopsis lyrata HOM05D001668 ORTHO05D001693 4.9e-07 58.5 111 36.0
BraA06t24209Z Brassica rapa HOM05D001668 ORTHO05D001693 4.9e-07 58.5 113 35.4
AT1G14290 Arabidopsis thaliana HOM05D001668 ORTHO05D001693 6.4e-07 58.2 111 36.0
MSTRG.13419 Avicennia marina HOM05D001668 ORTHO05D001693 6.4e-07 58.2 112 35.7
Migut.E00097 Erythranthe guttata HOM05D001668 ORTHO05D001693 6.4e-07 58.2 114 38.6
TPR.G37024 Trifolium pratense HOM05D001668 ORTHO05D001693 6.4e-07 58.2 114 38.6
Actinidia27096 Actinidia chinensis HOM05D001668 ORTHO05D001693 8.4e-07 57.8 115 40.9
BcaC07g38731 Brassica carinata HOM05D001668 ORTHO05D001693 8.4e-07 57.8 116 37.1
C08p16580 Brassica napus HOM05D001668 ORTHO05D001693 8.4e-07 57.8 116 37.1
BolC8t49286H Brassica oleracea HOM05D001668 ORTHO05D001693 8.4e-07 57.8 116 37.1
AUR62028789 Chenopodium quinoa HOM05D001668 ORTHO05D001693 8.4e-07 57.8 111 38.7
COL.COLO4_23005 Corchorus olitorius HOM05D001668 ORTHO05D001693 8.4e-07 57.8 75 45.3
BcaC03g15102 Brassica carinata HOM05D001668 ORTHO05D001693 1.1e-06 57.4 114 36.8
BcaNung06707 Brassica carinata HOM05D001668 ORTHO05D001693 1.1e-06 57.4 131 32.1
C02p26610 Brassica napus HOM05D001668 ORTHO05D001693 1.1e-06 57.4 114 36.8
BolC2t08732H Brassica oleracea HOM05D001668 ORTHO05D001693 1.1e-06 57.4 114 36.8
Carub.0001s1397 Capsella rubella HOM05D001668 ORTHO05D001693 1.1e-06 57.4 116 35.3
AUR62005768 Chenopodium quinoa HOM05D001668 ORTHO05D001693 1.1e-06 57.4 111 38.7
ClCG05G024350 Citrullus lanatus HOM05D001668 ORTHO05D001693 1.1e-06 57.4 113 35.4
Gohir.A03G098000 Gossypium hirsutum HOM05D001668 ORTHO05D001693 1.1e-06 57.4 114 37.7
THA.LOC104805155 Tarenaya hassleriana HOM05D001668 ORTHO05D001693 1.1e-06 57.4 115 37.4
Actinidia31204 Actinidia chinensis HOM05D001668 ORTHO05D001693 1.4e-06 57.0 41 70.7
AL1G38730 Arabidopsis lyrata HOM05D001668 ORTHO05D001693 1.4e-06 57.0 111 36.9
BcaB05g24469 Brassica carinata HOM05D001668 ORTHO05D001693 1.4e-06 57.0 114 37.7
CAN.G38.14 Capsicum annuum HOM05D001668 ORTHO05D001693 1.4e-06 57.0 109 36.7
Sed0010533 Sechium edule HOM05D001668 ORTHO05D001693 1.4e-06 57.0 110 35.5
TAR371G0415 Trochodendron aralioides HOM05D001668 ORTHO05D001693 1.4e-06 57.0 40 65.0
BcaB03g13105 Brassica carinata HOM05D001668 ORTHO05D001693 1.9e-06 56.6 121 35.5
Medtr5g040320 Medicago truncatula HOM05D001668 ORTHO05D001693 1.9e-06 56.6 111 36.0
Hund05885 Selenicereus undatus HOM05D001668 ORTHO05D001693 1.9e-06 56.6 116 37.1
Peaxi162Scf00026g03212 Petunia axillaris HOM05D001668 ORTHO05D001693 2.4e-06 56.2 109 35.8
Sed0005613 Sechium edule HOM05D001668 ORTHO05D001693 2.4e-06 56.2 114 36.0
THA.LOC104822119 Tarenaya hassleriana HOM05D001668 ORTHO05D001693 3.2e-06 55.8 111 36.0
BcaB03g14742 Brassica carinata HOM05D001668 ORTHO05D001693 4.2e-06 55.5 114 37.7
A06p10260 Brassica napus HOM05D001668 ORTHO05D001693 4.2e-06 55.5 113 34.5
CARHR025070 Cardamine hirsuta HOM05D001668 ORTHO05D001693 4.2e-06 55.5 112 37.5
Ciclev10032432m.g Citrus clementina HOM05D001668 ORTHO05D001693 4.2e-06 55.5 116 37.1
HanXRQChr12g0362571 Helianthus annuus HOM05D001668 ORTHO05D001693 4.2e-06 55.5 112 34.8
Lj6A788T58 Lonicera japonica HOM05D001668 ORTHO05D001693 4.2e-06 55.5 113 36.3
Lalb_Chr10g0098221 Lupinus albus HOM05D001668 ORTHO05D001693 4.2e-06 55.5 110 35.5
Aqoxy3G00670 Aquilegia oxysepala HOM05D001668 ORTHO05D001693 5.5e-06 55.1 41 65.9
Ca_04787_v3 Cicer arietinum L. HOM05D001668 ORTHO05D001693 5.5e-06 55.1 75 45.3
DCAR_031026 Daucus carota HOM05D001668 ORTHO05D001693 5.5e-06 55.1 75 44.0
Duzib248G1116 Durio zibethinus HOM05D001668 ORTHO05D001693 5.5e-06 55.1 41 65.9
ClCG11G009940 Citrullus lanatus HOM05D001668 ORTHO05D001693 7.1e-06 54.7 110 34.5
Thecc.02G347900 Theobroma cacao HOM05D001668 ORTHO05D001693 7.1e-06 54.7 115 34.8
unitig_749.g13230 Utricularia gibba HOM05D001668 ORTHO05D001693 7.1e-06 54.7 112 35.7
CSS0012620 Camellia sinensis var. sinensis HOM05D001668 ORTHO05D001693 9.3e-06 54.3 41 70.7
CSS0038849 Camellia sinensis var. sinensis HOM05D001668 ORTHO05D001693 9.3e-06 54.3 113 35.4
Thecc.07G113000 Theobroma cacao HOM05D001668 ORTHO05D001693 9.3e-06 54.3 77 41.6


User provided reference genes

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