Gene: AT1G14290
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G14290
- Transcript Identifier AT1G14290.1
- Gene Type Coding gene
- Location Chr1 : 4880307-4881784 : negative
Gene Family Information
- ID HOM05D001668
- #Genes/#Species 387/98
- Phylogenetic origin
- ID ORTHO05D001693
- #Genes/#Species 369/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT1G14290.1
- symbol SBH2
- Alias AtSBH2
- uniprot Q9AST3
Descriptions
- Description sphingoid base hydroxylase 2
- Computational description sphingoid base hydroxylase 2 (SBH2); CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: sphingoid base hydroxylase 1 (TAIR:AT1G69640.1); Has 2314 Blast hits to 2272 proteins in 379 species: Archae - 0; Bacteria - 367; Metazoa - 413; Fungi - 680; Plants - 393; Viruses - 3; Other Eukaryotes - 458 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008610 | IEA | Gene Ontology | lipid biosynthetic process | |
| GO:0008610 | IEA | InterPro | lipid biosynthetic process | |
| GO:0006629 | IEA | GOA Database | lipid metabolic process | |
| GO:0030148 | IEA | GOA Database | sphingolipid biosynthetic process | |
| GO:0046520 | IMP | Gene Ontology | sphingoid biosynthetic process | 1 |
| GO:0009640 | IMP | Gene Ontology | photomorphogenesis | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016491 | IBA IEA | Gene Ontology | oxidoreductase activity | 2 |
| GO:0016491 | IEA | InterPro | oxidoreductase activity | |
| GO:0005506 | IEA | Gene Ontology | iron ion binding | |
| GO:0005506 | IEA | InterPro | iron ion binding | |
| GO:0000170 | IGI | Gene Ontology | sphingosine hydroxylase activity | 3 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005789 | IEA | GOA Database | endoplasmic reticulum membrane | |
| GO:0005789 | IBA | Gene Ontology | endoplasmic reticulum membrane | 2 |
| GO:0005783 | IEA | GOA Database | endoplasmic reticulum | |
| GO:0005783 | IDA | Gene Ontology | endoplasmic reticulum | 4 |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0016020 | IBA | Gene Ontology | membrane | 2 |
| GO:0016021 | IEA | GOA Database | integral component of membrane | |
| GO:0005794 | IDA | Gene Ontology | Golgi apparatus | 4 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR006694 | Fatty acid hydroxylase |
| Mapman id | Description |
|---|---|
| 5.4.4 | Lipid metabolism.sphingolipid biosynthesis.sphingobase hydroxylase (SBH) |