Gene: Sopen01g006680

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g006680
  • Transcript Identifier Sopen01g006680.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 6702097-6706569 : positive

Gene Family Information

  • ID HOM05D001668
  • #Genes/#Species 387/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g006680.1

Descriptions

  • Description Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth. | sphingoid base hydroxylase 1 (SBH1) | CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase | BEST Arabidopsis thaliana protein match is: sphingoid base hydroxylase 2
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008610
IEA
InterProlipid biosynthetic process
GO:0009640
ISO
PLAZA Integrative Orthologyphotomorphogenesis AT1G69640
GO:0046520
ISO
PLAZA Integrative Orthologysphingoid biosynthetic process AT1G69640

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005506
IEA
InterProiron ion binding
GO:0016491
IEA
InterProoxidoreductase activity
GO:0000170
ISO
PLAZA Integrative Orthologysphingosine hydroxylase activity AT1G69640

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005783
ISO
PLAZA Integrative Orthologyendoplasmic reticulum AT1G69640
GO:0005794
ISO
PLAZA Integrative OrthologyGolgi apparatus AT1G69640

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006694 Fatty acid hydroxylase
Mapman id Description
5.4.4 Lipid metabolism.sphingolipid biosynthesis.sphingobase hydroxylase (SBH)